Small-spored Alternaria spp. (section Alternaria) are common pathogens on wild tomato species

The wild relatives of modern tomato crops are native to South America. These plants occur in habitats as different as the Andes and the Atacama Desert and are, to some degree, all susceptible to fungal pathogens of the genus Alternaria. Alternaria is a large genus. On tomatoes, several species cause early blight, leaf spots and other diseases. We collected Alternaria-like infection lesions from the leaves of eight wild tomato species from Chile and Peru. Using molecular barcoding markers, we characterized the pathogens. The infection lesions were caused predominantly by small-spored species of Alternaria of the section Alternaria, like A. alternata, but also by Stemphylium spp., Alternaria spp. from the section Ulocladioides and other related species. Morphological observations and an infection assay confirmed this. Comparative genetic diversity analyses show a larger diversity in this wild system than in studies of cultivated Solanum species. As A. alternata has been reported to be an increasing problem in cultivated tomatoes, investigating the evolutionary potential of this pathogen is not only interesting to scientists studying wild plant pathosystems. It could also inform crop protection and breeding programs to be aware of potential epidemics caused by species still confined to South America.     

A novel genome‐wide microsatellite resource for species of Eucalyptus with linkage‐to‐physical correspondence on the reference genome sequence

Keystone species in their native ranges, eucalypts, are ecologically and genetically very diverse, growing naturally along extensive latitudinal and altitudinal ranges and variable environments. Besides their ecological importance, eucalypts are also the most widely planted trees for sustainable forestry in the world. We report the development of a novel collection of 535 microsatellites for species of Eucalyptus, 494 designed from ESTs and 41 from genomic libraries. A selected subset of 223 was evaluated for individual identification, parentage testing, and ancestral information content in the two most extensively studied species, Eucalyptus grandis and Eucalyptus globulus. Microsatellites showed high transferability and overlapping allele size range, suggesting they have arisen still in their common ancestor and confirming the extensive genome conservation between these two species. A consensus linkage map with 437 microsatellites, the most comprehensive microsatellite‐only genetic map for Eucalyptus, was built by assembling segregation data from three mapping populations and anchored to the Eucalyptus genome. An overall colinearity between recombination‐based and physical positioning of 84% of the mapped microsatellites was observed, with some ordering discrepancies and sporadic locus duplications, consistent with the recently described whole genome duplication events in Eucalyptus. The linkage map covered 95.2% of the 605.8‐Mbp assembled genome sequence, placing one microsatellite every 1.55 Mbp on average, and an overall estimate of physical to recombination distance of 618 kbp/cM. The genetic parameters estimates together with linkage and physical position data for this large set of microsatellites should assist marker choice for genome‐wide population genetics and comparative mapping in Eucalyptus.     

Disturbances in Maternal Steroidogenesis and Appearance of Intrauterine Growth Retardation at High-Altitude Environments Are Established from Early Pregnancy. Effects of Treatment with Antioxidant Vitamins

Pregnancies at high-altitudes are influenced by hypoxia and oxidative stress and frequently affected by IUGR. However, a common thought is that early pregnant women visiting altitude have no major complications for gestation development, since IUGR is developed during the second half of pregnancy. Thus, using a well-characterized sheep-model, we aimed to determine whether long- and/or short-term exposure to high-altitude may affect maternal steroidogenesis and therefore embryo-fetal growth from conception. The second aim was to differentiate the relative role of hypoxia and oxidative stress by assessing the effects of supplementation with antioxidant agents during this early-pregnancy stage, which were previously found to be useful to prevent IUGR. The results indicate that both long- and short-term exposure to high-altitude causes disturbances in maternal ovarian steroidogenesis and negatively affects embryo-fetal growth already during the very early stages of gestation, with the consequences being even worsened in newcomers to high-altitude. The supply of antioxidant during this period only showed discrete effects for preventing IUGR. In conclusion, the present study gives a warning for clinicians about the risks for early-pregnant women when visiting high-altitude regions and suggests the need for further studies on the effects of the length of exposure and on the interaction of the exposure with the pregnancy stage.     

Characteristics of the Shiga-toxin-producing enteroaggregative Escherichia coli O104:H4 German outbreak strain and of STEC strains isolated in Spain

A Shiga-toxin-producing Escherichia coli (STEC) strain belonging to serotype O104:H4, phylogenetic group B1 and sequence type ST678, with virulence features common to the enteroaggregative E. coli (EAEC) pathotype, was reported as the cause of the recent 2011 outbreak in Germany. The outbreak strain was determined to carry several virulence factors of extraintestinal pathogenic E. coli (ExPEC) and to be resistant to a wide range of antibiotics. There are only a few reports of serotype O104:H4, which is very rare in humans and has never been detected in animals or food. Several research groups obtained the complete genome sequence of isolates of the German outbreak strain as well as the genome sequences of EAEC of serotype O104:H4 strains from Africa. Those findings suggested that horizontal genetic transfer allowed the emergence of the highly virulent Shiga-toxin-producing enteroaggregative E. coli (STEAEC) O104:H4 strain responsible for the outbreak in Germany. Epidemiologic investigations supported a linkage between the outbreaks in Germany and France and traced their origin to fenugreek seeds imported from Africa. However, there has been no isolation of the causative strain O104:H4 from any of the samples of fenugreek seeds analyzed. Following the German outbreak, we conducted a large sampling to analyze the presence of STEC, EAEC, and other types of diarrheagenic E. coli strains in Spanish vegetables. During June and July 2011, 200 vegetable samples from different origins were analyzed. All were negative for the virulent serotype O104:H4 and only one lettuce sample (0.6%) was positive for a STEC strain of serotype O146:H21 (stx1, stx2), considered of low virulence. Despite the single positive case, the hygienic and sanitary quality of Spanish vegetables proved to be quite good. In 195 of the 200 samples (98%), <10 colony-forming units (cfu) of E. coli per gram were detected, and the microbiological levels of all samples were satisfactory (<100 cfu/g). The samples were also negative for other pathotypes of diarrheagenic E. coli (EAEC, ETEC, tEPEC, and EIEC). Consistent with data from other countries, STEC belonging to serotype O157:H7 and other serotypes have been isolated from beef, milk, cheese, and domestic (cattle, sheep, goats) and wild (deer, boar, fox) animals in Spain. Nevertheless, STEC outbreaks in Spain are rare.     

A new nothrotheriid xenarthran from the early Pliocene of Pomata‐Ayte (Bolivia): new insights into the caniniform–molariform transition in sloths

Tardigrade xenarthrans are today represented only by the two tree sloth genera Bradypus and Choloepus, which inhabit the Neotropical rainforests and are characterized by their slowness and suspensory locomotion. Sloths have been recognized in South America since the early Oligocene. This monophyletic group is represented by five clades traditionally recognized as families: Bradypodidae, Megalonychidae, Mylodontidae (?), Megatheriidae (?) and Nothrotheriidae (?). A new nothrotheriid ground sloth represented by a dentary and several postcranial elements, Aymaratherium jeani gen. nov. , sp. nov. , from the early Pliocene locality of Pomata‐Ayte (Bolivia) is reported. This small‐ to medium‐sized species is characterized especially by its dentition and several postcranial features. It exhibits several convergences with the ‘aquatic’ nothrotheriid sloth Thalassocnus and the giant megatheriid ground sloth Megatherium (M.) americanum, and is interpreted as a selective feeder, with good pronation and supination movements. The tricuspid caniniform teeth of Aymaratherium may represent a transitional stage between the caniniform anterior teeth of basal megatherioids and basal nothrotheriids (1/1C‐4/3M as in Hapalops or Mionothropus) and the molariform anterior teeth of megatheriids (5/4M, e.g. Megatherium). To highlight the phylogenetic position of this new taxon among nothrotheriid sloths, we performed a cladistic assessment of the available dental and postcranial evidence. Our results, derived from a TNT treatment of a data matrix largely based on a published phylogenetic data set, indicate that Aymaratherium is either sister taxon to Mionothropus or sister to the clade Nothrotheriini within Nothrotheriinae. They further support the monophyly of both the Nothrotheriinae and the Nothrotheriini, as suggested previously by several authors.     

Seasonal differences in rainfall,food availability,and the foraging behavior of Tropical Kingbirds in the southern Amazon Basin

ABSTRACT Little is known about the relationship between seasonal food availability and the foraging strategies of insectivorous Neotropical birds. We studied a population of Tropical Kingbirds (Tyrannus melancholicus), a primarily insectivorous species, in eastern Bolivia to examine relationships between rainfall, food availability, and foraging strategies throughout the year. Our study site in the southern Amazon Basin was characterized by strong seasonal variation in the abundance of the kingbird's main insect prey (coleopterans and hymenopterans), with reduced abundance during the nonbreeding season which largely overlaps the dry season. Overall, mean search times for insect prey by Tropical Kingbirds during the breeding (96.9 ± 85.6 [SD] sec) and nonbreeding (83.7 ± 91.2 sec) seasons did not differ (P= 0.23). However, during the nonbreeding season, kingbird search times were negatively, but nonsignificantly, correlated with coleopteran abundance (r²= 0.43, P= 0.16) and significantly and negatively correlated with hymenopteran abundance (r²= 0.72, P= 0.03). Although insect abundance differed seasonally, kingbird search times did not, perhaps because kingbirds forage on a greater variety of insects during the nonbreeding season or, during the breeding season, kingbird search times may be influenced by the need to monitor and defend nests as well as constraints on the types of prey that can be fed to nestlings. However, the reduced abundance of their primary insect prey and negative relationships between the abundance of those prey and search times during the dry, nonbreeding season suggest that Tropical Kingbirds in southern Amazonia may be food limited, potentially explaining why some migrate and spend that season elsewhere.     

Combined effects of fish and macroinvertebrate predation on zooplankton in a littoral mesocosm experiment

Whether macrophytes offer an effective refuge for zooplankton in all shallow lakes is subject to debate. To explore potential constraints between different predator threats and the related habitat choice by zooplankton, we conducted a mesocosm experiment in 12 large-sized pools mimicking the nearshore environment with part of its length being covered by submersed macrophytes (Egeria densa) and holding a mixed zooplankton community. Four treatments were used: (i) young zooplanktivorous fish (3 silverside, Odontesthes bonariensis) in the “open-water” zone; (ii) macroinvertebrate predator (31 grass shrimp, Palaemonetes argentinus) in the vegetated zone; (iii) both, fish in the open-water and shrimp in the vegetated zones; and (iv) control with no predators. Our results show specific effects of each predator on the abundance, composition, and size of cladocerans. Regarding distribution, in control and shrimp mesocosms, no differences were found between the two zones, while cladocerans were clearly more abundant in the vegetated side in the presence of fish. When both fish and shrimp were present, cladocerans preferred the vegetated zone too, but in a smaller proportion, and their abundance was less. The presence of predatory macroinvertebrates in vegetated littoral zone reduces the refuge value of this habitat, at least for cladocerans.