Sublethal effects of textile dye stuff effluent on selected oxidative enzymes and tissue respiration of Cyprinus carpio (Linn.).

Toxic effects of sublethal concentration of dye stuff effluent on succinic dehydrogenase (SDH) and lactic dehydrogenase (LDH) activities and tissue respiration were studied in C. carpio. While the sublethal exposure significantly reduced SDH activity and tissue respiration, LDH activity increased in gill, brain, liver, muscle and kidney. The maximum inhibition of SDH activity (74%) was recorded in gill and the minimum (38%) in liver. The percentage reduction of oxygen consumption in the tested tissues was in the order of gill greater than brain greater than liver greater than muscle greater than kidney. The muscle showed the highest level (96%) of increase in LDH activity whereas the kidney cells showed the minimum increase. Exposure to sublethal concentration suppressed the aerobic respiration and triggered the anaerobic respiration.     

Activating mutations in the NH2- and COOH-terminal moieties of the Gs alpha subunit have dominant phenotypes and distinguishable kinetics of adenylyl cyclase stimulation.

The alpha subunit polypeptides of the G proteins Gs and Gi2 stimulate and inhibit adenylyl cyclase, respectively. The alpha s and alpha i2 subunits are 65% homologous in amino acid sequence but have highly conserved GDP/GTP binding domains. Previously, we mapped the functional adenylyl cyclase activation domain to a 122 amino acid region in the COOH-terminal moiety of the alpha s polypeptide (Osawa et al: Cell 63:697-706, 1990). The NH2-terminal half of the alpha s polypeptide encodes domains regulating beta gamma interactions and GDP dissociation. A series of chimeric cDNAs having different lengths of the NH2- or COOH-terminal coding sequence of alpha s substituted with the corresponding alpha i2 sequence were used to introduce multi-residue non-conserved mutations in different domains of the alpha s polypeptide. Mutation of either the amino- or carboxy-terminus results in an alpha s polypeptide which constitutively activates cAMP synthesis when expressed in Chinese hamster ovary cells. The activated alpha s polypeptides having mutations in either the NH2- or COOH-terminus demonstrate an enhanced rate of GTP gamma S activation of adenylyl cyclase. In membrane preparations from cells expressing the various alpha s mutants, COOH-terminal mutants, but not NH2-terminal alpha s mutants markedly enhance the maximal stimulation of adenylyl cyclase by GTP gamma S and fluoride ion. Neither mutation at the NH2- nor COOH-terminus had an effect on the GTPase activity of the alpha s polypeptides. Thus, mutation at NH2- and COOH-termini influence the rate of alpha s activation, but only the COOH-terminus appears to be involved in the regulation of the alpha s polypeptide activation domain that interacts with adenylyl cyclase.     

Prospective biomarkers of stem cells of human endometrium and fallopian tube compared with bone marrow

The applicability of stem cells from the human endometrium and fallopian tube for regeneration is a fascinating area of research because of the role of these cells in dynamic tissue remodelling and their cyclical regenerative property during the menstrual cycle and pregnancy. Nevertheless, studies on the identity of biomarkers of these stem cells are limited and need to be extended. The present study has aimed at exploring the tissue-specific biomarkers of stem cells derived from the human endometrium and fallopian tube compared with those from bone marrow. Cells were isolated from human endometrium and fallopian tubes and characterized for biomarkers, including CD34, CD133, CD117, CD90, CD105, CD73, nestin, CD29, CD44, CD31, CD54, CD166, CD106, CD49d, CD45, ABCG2, SSEA4, OCT4, SOX2, CD140b and CD146, by flowcytometry. Both endometrium and fallopian tube sources exhibited positivity over a wide range of markers, as did bone marrow. In particular, they exhibited pluripotency, perivascular and mesenchymal stem cell markers and cell adhesion molecules, thereby suggesting their relevance in tissue repair and regeneration. Overall, the results of this study provide evidence for the presence of stem cells in the human endometrium and fallopian tube, which could thus represent additional stem cell sources for regenerative medicine.     

Allelopathic effect of actinobacterial isolates against selected weeds

The taxonomic characteristics of weeds such as morphology of shoot, leaves, flowers, stem, fruits and seeds were recorded as Gynandropsis pentaphylla, DC, Amarantus spinosus Linn, Cyperus rotundus, Amarantus viridis Linn, Cassia occidentalis, Linn and Echinochilora orygicola. Totally 20 actinobacteria isolates were screened for herbicidal activity against the weed. Among the 20 isolates, only four actinobacterial isolates KA1-3, KA1-4, KA1-7 and KA23A showed significant herbicidal activity against C. rotundus. The herbicidal effect of actinobacterial culture filtrates on germination and seedling growth of C. rotundus was tested. The shoot and root growth of C. rotundus was severely affected when compared to control. The potent actinobacterial isolates KA1-4 and KA1-7 were characterised based on their morphological and molecular phylogenetic property and were identified as Streptomyces sp. The present study concludes that actinobacterial isolates will be used as bioherbicide against C. rotundus. Further studies are required to confirm the activity of actinobacterial isolates against C. rotundus under field conditions.     

Isolation,characterisation and antifungal activity of marine actinobacteria from Goa and Kerala,the west coast of India

In total, 53 marine actinobacteria were isolated from the soils of six different locations in Goa and Kerala, on the west coast of India. All the isolates were screened for their antifungal properties against some phytopathogenic fungi by dual culture experiments. Among the 53 actinobacterial isolates, five isolates inhibited the growth of phytopathogens, namely Colletotrichum falcatum, Thielaviopsis paradoxa and Fusarium semitectum. But none of them were effective against Aspergillus niger, Aspergillus candidus and Aspergillus flavus. The antifungal activity of the actinobacteria was tested by food poisoning techniques, using four different concentrations (0.5%, 1.0%, 1.5% and 2.0%) of cell-free culture filtrates, which showed promising activity (almost 100% inhibition) against three pathogenic and one non-pathogenic fungi at 2% extract concentration. A comparison of the antifungal activity of the actinobacteria was also made with three commercial fungicides, namely hexaconazole, thiophanate methyl and propiconazole. The identity of the antagonistic actinobacteria was confirmed based on the morphological, cultural, biochemical, chemo-taxonomical and physiological characteristics. Among 5 antagonistic isolates, three antagonistic isolates were assigned to the genus Streptomyces, Nocardiopsis (1) and Saccharopolyspora (1).     

CPAD,Curated Protein Aggregation Database: A Repository of Manually Curated Experimental Data on Protein and Peptide Aggregation

Accurate distinction between peptide sequences that can form amyloid-fibrils or amorphous β-aggregates, identification of potential aggregation prone regions in proteins, and prediction of change in aggregation rate of a protein upon mutation(s) are critical to research on protein misfolding diseases, such as Alzheimer’s and Parkinson’s, as well as biotechnological production of protein based therapeutics. We have developed a Curated Protein Aggregation Database (CPAD), which has collected results from experimental studies performed by scientific community aimed at understanding protein/peptide aggregation. CPAD contains more than 2300 experimentally observed aggregation rates upon mutations in known amyloidogenic proteins. Each entry includes numerical values for the following parameters: change in rate of aggregation as measured by fluorescence intensity or turbidity, name and source of the protein, Uniprot and Protein Data Bank codes, single point as well as multiple mutations, and literature citation. The data in CPAD has been supplemented with five different types of additional information: (i) Amyloid fibril forming hexa-peptides, (ii) Amorphous β-aggregating hexa-peptides, (iii) Amyloid fibril forming peptides of different lengths, (iv) Amyloid fibril forming hexa-peptides whose crystal structures are available in the Protein Data Bank (PDB) and (v) Experimentally validated aggregation prone regions found in amyloidogenic proteins. Furthermore, CPAD is linked to other related databases and resources, such as Uniprot, Protein Data Bank, PUBMED, GAP, TANGO, WALTZ etc. We have set up a web interface with different search and display options so that users have the ability to get the data in multiple ways. CPAD is freely available at http://www.iitm.ac.in/bioinfo/CPAD/. The potential applications of CPAD have also been discussed.     

Chemical sensing of DNT by engineered olfactory yeast strain

With the increasing threat of environmental toxicants including biological and chemical warfare agents, fabricating innovative biomimetic systems to detect these harmful agents is critically important. With the broad objective of developing such a biosensor, here we report the construction of a Saccharomyces cerevisiae strain containing the primary components of the mammalian olfactory signaling pathway. In this engineered yeast strain, WIF-1alpha, olfactory receptor signaling is coupled to green fluorescent protein expression. Using this 'olfactory yeast', we screened for olfactory receptors that could report the presence of the odorant 2,4-dinitrotoluene, an explosive residue mimic. With this approach, we have identified the novel rat olfactory receptor Olfr226, which is closely related to the mouse olfactory receptors Olfr2 and MOR226-1, as a 2,4-dinitrotoluene-responsive receptor.     

Apoptosis of ovarian granulosa cells: correlation with the reduced activity of ERK-signaling module

Apoptosis of the ovarian granulosa cells plays a crucial role in the determination of the number of follicles destined to ovulate in each reproductive cycle. While the activation of specific apoptotic pathway or the inactivation of cell survival pathway can initiate apoptosis, the signaling mechanism(s) involved in initiating the onset of apoptosis in granulosa cells is not fully understood. In the present study, using granulosa cells derived from eCG-primed immature rats, we investigated the temporal signaling events involved in the onset of apoptosis in the granulosa cells. The administration of 15 IU of eCG to 21-day-old immature female rats stimulate the growth and development of ovarian follicles until 72 h, after which the granulosa cells of the ovarian follicles undergo apoptosis due to the waning levels of tropic hormonal support. An analysis of the signaling events leading to apoptosis indicates that the DNA fragmentation can be seen in these cells from 96 h. A small increase in the levels of the pro-apoptotic factor Bax can be seen from 96 h while an increase in the activity of JNK can be seen from 108 h onwards. By contrast, a reduction in ERK signaling can be seen by 48 h. Similar reduction in Raf-1 kinase activity can be discerned from 48 h onwards. A concomitant decrease in the phosphorylated form of Bad can also be detected. These findings taken together, suggest that the loss of tropic hormone support is translated into the attenuation of Raf-1-MEK-ERK signaling pathway and this reduction along with a reduction in the levels of phosphorylated form of Bad triggers the onset of apoptosis in the ovarian granulosa cells.