Low dissolved oxygen levels reduce anti-predation behaviours of the freshwater clam Corbicula fluminea

1. When dissolved oxygen levels decline in aquatic systems, prey may be unable to maintain behaviours protecting them from predators. We examined how oxygen availability affected anti‐predator responses in the freshwater clam, Corbicula fluminea. 2. When attacked, bivalves protect their soft tissues by closing their protective valves. This reduces vulnerability to small predators, but ventilation and oxygen uptake are suspended. We found that after a simulated attack, clams under low oxygen conditions reopened their valves sooner than clams under high oxygen conditions, suggesting that hypoxia increases vulnerability to predation. 3. Bivalves may also evade predators through burial into the substratum. Deeper burial confers greater refuge from predators, but increases the costs of ventilation. In a second experiment, we studied how burial depth of C. fluminea is affected by oxygen availability. Additionally, we examined whether clams changed burial depth following a simulated attack by a small predator, and whether this response was affected by oxygen availability. Our results offered partial support for the hypothesis that burial depth is reduced under hypoxic conditions, but the simulated attack did not affect burial depth in any oxygen treatments.     

Noninvasive Estimation of Black Bear Abundance Incorporating Genotyping Errors and Harvested Bear

ABSTRACT Estimating black bear (Ursus americanus) population size is a difficult but important requirement when justifying harvest quotas and managing populations. Advancements in genetic techniques provide a means to identify individual bears using DNA contained in tissue and hair samples, thereby permitting estimates of population abundance based on established mark-capture-recapture methodology. We expand on previous noninvasive population-estimation work by geographically extending sampling areas (36,848 km²) to include the entire Northern Lower Peninsula (NLP) of Michigan, USA. We selected sampling locations randomly within biologically relevant bear habitat and used barbed wire hair snares to collect hair samples. Unlike previous noninvasive studies, we used tissue samples from harvested bears as an additional sampling occasion to increase recapture probabilities. We developed subsampling protocols to account for both spatial and temporal variance in sample distribution and variation in sample quality using recently published quality control protocols using 5 microsatellite loci. We quantified genotyping errors using samples from harvested bears and estimated abundance using statistical models that accounted for genotyping error. We estimated the population of yearling and adult black bears in the NLP to be 1,882 bears (95% CI = 1,389-2,551 bears). The derived population estimate with a 15% coefficient of variation was used by wildlife managers to examine the sustainability of harvest over a large geographic area.     

Seasonal variation in diet quality: antioxidants,invertebrates and blue tits Cyanistes caeruleus

Breeding success is often dictated by the degree to which parents can synchronize the maximum food requirements of offspring to the peak in abundance of invertebrate prey. Less studied is how the nutritional quality of individual diet items impacts on breeding. In the present study, we assessed the abundance and antioxidant concentrations of arboreal arthropods from oak woodland and provisioning behaviour of the blue tit Cyanistes caeruleus. Dietary antioxidants are important during development because they defend against oxidative stress. Operophtera caterpillars, Erannis caterpillars, and spiders contained significantly different levels of individual carotenoids and α‐tocopherol. Concentrations of lutein and β‐carotene in Operophtera caterpillars did not vary seasonally, although concentrations of zeaxanthin declined and α‐tocopherol increased with date. Blue tit broods hatched later in the season received significantly fewer caterpillars and more spiders per chick compared to earlier broods. Reflecting changes in prey composition, blue tit nestling plasma showed decreases in zeaxanthin and increases in α‐tocopherol with date. Thus, processes that shift the timing of breeding in birds and/or prey composition are likely to alter antioxidant intake and thus potentially influence the oxidative stress status of animals. The data obtained in the present study suggest a mechanism by which environmental change as a result of human activities could influence the health and fitness of individuals in natural populations. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 99 , 708–717.     

Periphyton‐based transfer functions to assess ecological imbalance and management of a subtropical ombrotrophic peatland

1. To assess the biological status and response of aquatic resources to management actions, managers and decision‐makers require accurate and precise metrics. This is especially true for some parts of the Florida Everglades where multiple stressors (e.g. hydrologic alterations and eutrophication) have resulted in a highly degraded and fragmented ecosystem. Biological assessments are required that directly allow for the evaluation of historical and current status and responses to implantation of large‐scale restoration projects. 2. Utilising periphyton composition and water‐quality data obtained from long‐term (15 years) monitoring programmes, we developed calibrated and verified periphyton‐based numerical models (transfer functions) that could be used to simultaneously assess multiple stressors affecting the Everglades peatland (e.g. salinity, nitrogen and phosphorus). Periphyton is an ideal indicator because responses to stressors are rapid and predictable and possess valued ecological attributes. 3. Weighted averaging partial least squares regression was used to develop models to infer water‐quality concentrations from 456 samples comprising 319 periphyton taxa. Measured versus periphyton‐inferred concentrations were strongly related for log‐transformed salinity ( = 0.81; RMSEP 0.15 mg L^?1) and log‐transformed total phosphorus (TP; = 0.70; RMSEP 0.18 mg L^?1), but weakly related for total Kjeldahl nitrogen (TKN) ( = 0.46; RMSEP 0.12 mg L^?1). Validation results using an independent 455 sample data set were similar (log(salinity) r² = 0.78, log(TP) r² = 0.65 and log(TKN) r² = 0.38). 4. Water Conservation Area 1 (WCA‐1), a large ombrotrophic subtropical peatland impacted by multiple water‐quality stressors that has undergone major changes in water management, was used as a case study. The models were applied to a long‐term periphyton data set to reconstruct water‐quality trends in relation to restoration efforts to reduce nutrient loading to the Everglades. The combination of biologically inferred TP and salinity was used to identify the ecological status of periphyton assemblages. Periphyton assemblages were ecologically imbalanced with respect to salinity and TP. Salinity imbalance varied spatially and temporally, whereas TP was spatially restricted. Imbalances caused by water management were owing to salinity more so than to TP. 5. The transfer functions developed for the Everglades are trait‐based quantitative numerical methods and are ideal because the abundances of species are modelled numerically in relation to a stressor. The resulting inferred value is a numerical representation of the stressor’s effect on biological condition that can be compared against the management of the stressor independent of other factors. The benefits are that biological lags or hysteresis events can easily be identified and environmental conditions can be estimated when measurements are lacking. Reporting biological assessments in terms of well‐defined water‐quality metrics (e.g. numeric criterion) increased the communicative ability of the assessment. The use of multiple metrics to assess ecological imbalance increased the ability to identify probable causes.     

Long-Range Restriction Mapping of Megabase-Sized Chromosomes that May Be Homologs in Trypanosoma brucei

ABSTRACT. Trypanosoma brucei is a blood-borne pathogen that changes its variant surface glycoprotein coat, thus evading immune destruction. Restriction digestion, combined with probe hybridization studies, was used to construct long-range restriction maps of the 1.4 (M4) and 1.5 megabase (M3) chromosomes from the IsTaR1 serodeme of T. b. brucei . Comparison of the two chromosomes suggests that they are a homologous pair. Hybridization with a repetitive sequence probe also identifies several copies on the M4 chromosome and a relative paucity of cross-hybridizing repetitive sequence on the larger M3 chromosome.