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Uranium (U) tolerant aerobic heterotrophs were isolated from the subsurface soils of one of the pre-mined U-rich deposits at Domiasiat located in the north-eastern part of India. On screening of genomic DNA from 62 isolates exhibiting superior U and heavy metal tolerance, 32 isolates were found to be positive for PIB-type ATPase genes. Phylogenetic incongruence and anomalous DNA base compositions revealed the acquisition of PIB-type ATPase genes by six isolates through horizontal gene transfer (HGT). Three of these instances of HGT appeared to have occurred at inter-phylum level and the other three instances indicated to have taken place at intra-phylum level. This study provides an insight into one of the possible survival strategies that bacteria might employ to adapt to environments rich in uranium and heavy metals. 相似文献
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Ram Kothandan 《Bioinformation》2015,11(1):6-10
MiRNAs are small (~22nt long) non-coding RNA sequences; binds to the complementarity target sites in 3'' Untranslated Region
(UTR) of mRNA sequences but not restricted to other mRNA regions viz., 5'' UTR and Coding sequences (CDS). Complementarity
binding of miRNA to mRNA target sites either results in complete degradation of the mRNA itself or it may regulate the mRNA as
an oncogene or as a tumor suppressor gene. However, the exact mechanism involved in identifying a miRNA to be associated with
cancer is still unclear. Further, with the outburst in the number of miRNAs sequences recorded every year in miRBase, the gap is
still widening mainly due to the laborious and economically unfavorable experimental procedures associated with the functional
annotation. Motivated by the fact, we constructed a two-step support vector machine-based predictive model - miRSEQ and
miRINT. However, the major pitfall during the construction of the model is the class imbalance problem. Hence, in order to
overcome class imbalance problem, in the present study we empirically compare the effectiveness of two different methods viz.,
Synthetic Minority Oversampling Technique (SMOTE) and cost-senstive learning method. Performance measures were evaluated
in terms of Precision and Recall. Based on our result, it was observed that for miRNA dataset with high class imbalance utilized for
predicting association of cancer, cost-sensitive method outperformed the oversampling method. 相似文献
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M K Ram L J Andrade T B Phillips M R van Schravendijk 《Protein expression and purification》1999,17(2):305-311
The A(280)/A(260) ratio of a purified protein is frequently used as an indication of the purity of the preparation with respect to nucleic acids. We show here that for low-molecular-weight recombinant proteins purified from Escherichia coli, a low A(280)/A(260) ratio can also result from contamination with UDP-linked murein precursors derived from bacterial cell wall metabolism. Although these precursors are small molecules of molecular weight 1000-1200, they comigrate in gel filtration with recombinant human FKBP (MW 11,820). This gel filtration behavior, which is distinct from that of unmodified mononucleotides, does not reflect binding interactions with FKBP, but is an intrinsic property of these precursors. Therefore, these molecules would be expected to copurify with other low-molecular-weight proteins, especially in the abbreviated purification protocols made possible by freeze-thaw release of recombinant proteins from E. coli (Johnson, B. H., and Hecht, M. H. (1994) BioTechnology 12, 1357-1360). Several alternative strategies are discussed for integrating these findings into the design of improved purification procedures for low-molecular-weight recombinant proteins. 相似文献
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T. R. Shankar Raman 《Journal of biosciences》1997,22(2):203-218
Chital or axis deer (Axis axis) form fluid groups that change in size temporally and in relation to habitat. Predictions of hypotheses relating animal density,
rainfall, habitat structure, and breeding seasonality, to changes in chital group size were assessed simultaneously using
multiple regression models of monthly data collected over a 2 yr period in Guindy National Park, in southern India. Over 2,700
detections of chital groups were made during four seasons in three habitats (forest, scrubland and grassland). In scrubland
and grassland, chital group size was positively related to animal density, which increased with rainfall. This suggests that
in these habitats, chital density increases in relation to food availability, and group sizes increase due to higher encounter
rate and fusion of groups. The density of chital in forest was inversely related to rainfall, but positively to the number
of fruiting tree species and availability of fallen litter, their forage in this habitat. There was little change in mean
group size in the forest, although chital density more than doubled during the dry season and summer. Dispersion of food items
or the closed nature of the forest may preclude formation of larger groups. At low densities, group sizes in all three habitats
were similar. Group sizes increased with chital density in scrubland and grassland, but more rapidly in the latter—leading
to a positive relationship between openness and mean group size at higher densities. It is not clear, however, that this relationship
is solely because of the influence of habitat structure. The rutting index (monthly percentage of adult males in hard antler)
was positively related to mean group size in forest and scrubland, probably reflecting the increase in group size due to solitary
males joining with females during the rut. The fission-fusion system of group formation in chital is thus interactively influenced
by several factors. Aspects that need further study, such as interannual variability, are highlighted. 相似文献
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Bo Ram Kim Ji-Young Park Hyung Jae Jeong Hyung-Jun Kwon Su-Jin Park In-Chul Lee 《Journal of enzyme inhibition and medicinal chemistry》2018,33(1):1256-1265
Sialidases are key virulence factors that remove sialic acid from the host cell surface glycan, unmasking receptors that facilitate bacterial adherence and colonisation. In this study, we developed potential agents for treating bacterial infections caused by Streptococcus pneumoniae Nan A that inhibit bacterial sialidase using Turmeric and curcumin analogues. Design, synthesis, and structure analysis relationship (SAR) studies have been also described. Evaluation of the synthesised derivatives demonstrated that compound 5e was the most potent inhibitor of S. pneumoniae sialidase (IC50?=?0.2?±?0.1?µM). This compound exhibited a 3.0-fold improvement in inhibitory activity over that of curcumin and displayed competitive inhibition. These results warrant further studies confirming the antipneumococcal activity 5e and indicated that curcumin derivatives could be potentially used to treat sepsis by bacterial infections. 相似文献
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