Abundance Estimation With a Transient Model Under the Robust Design

Abstract: A common situation in capture-mark-recapture (CMR) studies on birds and other organisms is to capture individuals not belonging to the studied population only present during the short time of the capture session. Presence of such transient individuals affects demographic parameter estimation from CMR data. Methods exist to reduce biases on survival estimates in the presence of transients and have been shown to be particularly efficient within the Robust Design framework (several secondary capture sessions within a short time interval during which the studied population can be assumed closed). We present a new model to estimate population size accounting for transients. We first used simulated data to show that the method reduces positive biases due to transients. In a second step, we applied the method to a real CMR dataset on a reed warbler (Acrocephalus scirpaceus) population. Population size estimates are reduced by up to 50% when correcting for the presence of transients. Many field studies on managed animal populations use capture-recapture methodology to obtain crucial parameters of the focal population demography. The resulting data sets are used either to estimate population size ignoring the presence of transients, or to estimate vital rates, accounting for transients but overlooking abundance estimation. Our method conciliates these 2 approaches.     

In vitro and in vivo discrepancy in inducing apoptosis by mesenchymal stromal cells delivering membrane-bound tumor necrosis factor–related apoptosis inducing ligand in osteosarcoma pre-clinical models

Background

Osteosarcoma (OS) is the most frequent pediatric malignant bone tumor. OS patients have not seen any major therapeutic progress in the last 30 years, in particular in the case of metastatic disease, which requires new therapeutic strategies. The pro-apoptotic cytokine Tumor necrosis factor (TNF)–Related Apoptosis Inducing Ligand (TRAIL) can selectively kill tumor cells while sparing normal cells, making it a promising therapeutic tool in several types of cancer. However, many OS cell lines appear resistant to recombinant human (rh)TRAIL-induced apoptosis. We, therefore, hypothesized that TRAIL presentation at the membrane level of carrier cells might overcome this resistance and trigger apoptosis.

Linking territory quality and reproductive success in the Red-billed Chough Pyrrhocorax pyrrochorax: implications for conservation management of an endangered population

As changes in land use have been identified as the main factor explaining the decline in Red-billed Chough Pyrrhocorax pyrrochorax populations across western Europe, a study was carried out in Ouessant (western France) in order to assess the relationship between territory quality and reproductive success. As such an approach could be hindered by the fact that the birds' reproductive performance could be influenced by their breeding experience, we analysed both inter- and intranest-site variation in fledging success. Territory quality was quantified, combining habitat selection, territory size, the amount of feeding area and distance between nest and feeding area. Feeding habitats selected positively by Red-billed Choughs were characterized by a mean sward height of less than 5 cm. Foraging area was on average 21 557 m². Feeding areas (i.e. feeding habitat within foraging area) close to the nest were used preferentially. Fledging success appeared to be influenced neither by the total area of feeding sites in a Chough territory, nor by the mean feeding flight distance. However, fledging success adjusted to nest-site and year appeared to be influenced by feeding area close to the nest: one additional fledgling was expected for each additional 10 000 m² of feeding habitat within 300 m of the nest. These first results allowed us to consider recommending landscape management measures to ensure a favourable conservation status of local Chough populations.     

Tracing carbon and oxygen isotope signals from newly assimilated sugars in the leaves to the tree-ring archive

The analysis of δ ¹³C and δ ¹⁸O in tree-ring archives offers retrospective insights into environmental conditions and ecophysiological processes. While photosynthetic carbon isotope discrimination and evaporative oxygen isotope enrichment are well understood, we lack information on how the isotope signal is altered by downstream metabolic processes.
In Pinus sylvestris , we traced the isotopic signals from their origin in the leaf water ( δ ¹⁸O) or the newly assimilated carbon ( δ ¹³C), via phloem sugars to the tree-ring, over a time-scale that ranges from hours to a growing season.
Seasonally, variable ¹³C enrichment of sugars related to phloem loading and transport did lead to uncoupling between δ ¹³C in the tree-ring, and the c _i/ c _a ratio at the leaf level. In contrast, the oxygen isotope signal was transferred from the leaf water to the tree-ring with an expected enrichment of 27‰, with time-lags of approximately 2 weeks and with a 40% exchange between organic oxygen and xylem water oxygen during cellulose synthesis.
This integrated overview of the fate of carbon and oxygen isotope signals within the model tree species P. sylvestris provides a novel physiological basis for the interpretation of δ ¹³C and δ ¹⁸O in tree-ring ecology.     

Climate envelope, life history traits and the resilience of birds facing global change

Few studies have examined how life history traits and the climate envelope influence the ability of species to respond to climate change and habitat degradation. In this study, we test whether 18 species-specific variables, related to the climate envelope, ecological envelope and life history, could predict recent population trends (over 17 years) of 71 common breeding bird species in France. Habitat specialists were declining at a much higher rate than generalists, a sign that habitat quality is decreasing globally. The lower the thermal maximum (temperature at the hot edge of the climate envelope), the more negative are the population trends and the less tolerant these species are climate warming, regardless of the thermal range over which these species occur. The life history trait 'the number of broods per year' was positively related to recent trends, suggesting that single-brooded species might be more sensitive to advances in food peak due to climate change, as it increases the risk of mistiming their single-breeding event. Annual fecundity explained long-term declines, as it is a good proxy for most other demographic rates, with shorter-lived species being more sensitive to global change: individuals of species with higher fecundity might have too short a life to learn to adapt to directional changes in their environment. Finally, there was evidence that natal dispersal was a predictor of recent trends, with species with high natal dispersal experiencing smaller population declines than species with low natal dispersal. This is expected if the higher the natal dispersal, the larger the ability to shift spatially when facing changes in local habitat or climate, in order to track optimal conditions and adapt to global change. Identifying decline-promoting factors allow us to infer mechanisms responsible for observed declines in wild bird populations facing global change, and by doing so allow for a more pre-emptive approach to conservation planning.     

Receptors for Protons or Lipid Messengers or Both?

The subfamily of G protein-coupled receptors comprising GPR4, OGR1, TDAG8, and G2A was originally characterized as a group of proteins mediating biological responses to the lipid messengers sphingosylphosphorylcholine (SPC), lysophosphatidylcholine (LPC), and psychosine. We challenged this view by reporting that OGR1 and GPR4 sense acidic pH and that this process is not affected by concentrations of SPC or LPC previously reported as agonistic. The original publications describing GPR4, OGR1, and G2A as receptors for LPC or SPC have now been retracted, and the first studies exploring receptors of this family as pH sensors in physiology have appeared. Here we review the status of this field and we confirm that GPR4, OGR1, and TDAG8 should be considered as proton-sensing receptors. Negative regulation of these receptors by high micromolar concentrations of lipids appears not specific in our experiments.     

Modelling the spatial dynamics of a recovering species: the Grey Heron Ardea cinerea in France

In many countries, the implementation of measures to protect declining species has led to the recolonization of some areas by bird species within their historic range. There is, however, a lack of quantitative tools for exploring and projecting such large-scale dynamics. Here, we present an approach that makes use of both census and habitat suitability data and integrates them into a spatially explicit model of colonization dynamics (cellular automaton). The Grey Heron Ardea cinerea , which has recently recolonized much of France following legal protection measures, was used as a focal species. Data analysis allowed us to quantify the positive effects of habitat quality on the probability of colonization, and to uncover both positive and negative density-dependent colony settlement processes. Projective simulations then allowed us to determine an inflection point in global colonization dynamics and predict a significant reduction in the colonization rate during the next 50 years. This makes it possible to project the spatial distribution of the species at different timescales, and to estimate the carrying capacity of France for the species (around 1500 colonies).     

Responses of Songbirds to Magpie Reduction in an Urban Habitat

ABSTRACT Bird communities change in response to urbanization, which poses a challenge for conservationists. We examined the consequences of the recent increase in European cities of black-billed magpie (Pica pica), which has become the main bird nest predator in many urban parks, yet its impact remains disputed. We tested predator role in the limitation of postfledging and adult numbers of 10 common songbird species. We conducted before-after, control-treatment experimental magpie removal in the suburbs near Paris, France, during our 3-year study. We also compared the productivity and the relative densities between urban and rural habitats for 14 songbirds. We found that magpies had very limited effect on songbird productivity, even for species sensitive to predation by corvids. In addition, impact of the magpie on population levels of passerines would also be minimized because we found no relationship between productivity of prey and their densities. Thus, the recent colonization of urban parks by magpies should not threaten persistence of local songbird populations. Yet, there was evidence that a small number of non-territorial bird species were attracted to places where magpies were removed. Magpie densities may have modified habitat selection for foraging that might be explained by predator avoidance. But overall, characteristics of urban habitat explain variations of productivity and densities of songbirds better than did magpie predation. In France, conservationists widely use the control of predators, aiming at increasing levels of prey populations. Despite very high densities of magpies in urban parks, we gave evidence that removal of this predator was ineffective to preserve populations of common passerines. This would suggest that the risk induced by the presence of magpies is independent of its density, and conservationists must carefully assess its impact. In the future, we recommend management policies include long-term monitoring of magpie-prey interactions during breeding season to detect potential changes in songbird responses to magpie presence.     

Identifying autumn migration routes for the globally threatened Aquatic Warbler Acrocephalus paludicola

The migration strategy of the globally threatened Aquatic Warbler Acrocephalus paludicola needs to be known to ensure that effective action is taken to conserve its principal stopover sites. Using data from ringing stations during the autumn migration of reedbed warblers, we developed an index that allowed countries and sites to be compared in terms of their numerical importance to migrating Aquatic Warblers. According to this index, there was no significant decline in the number of Aquatic Warblers migrating through Europe during the 1990s. France appears to receive the largest numbers of this species in autumn compared with other European countries. Within France, only coastal regions are visited by the species (but not in the Mediterranean), with the largest numbers occurring in Normandy and Loire, while Brittany receives large numbers in some years but not in others. We also identified some French sites that are of major importance to migrating Aquatic Warblers depositing reserves on migration. France therefore plays a very important part in providing stopover sites for Aquatic Warblers, which means that France should play a major role in undertaking conservation measures for this threatened species.