Effects of crude oil on survival,morphology, and anatomy of two aquatic macrophytes from the Amazon floodplains

Aquatic herbaceous macrophytes grow in profusion in the Amazon fertile varzea floodplains. A large number of species occur but only a few are particularly abundant, supporting food chains, contributing substantially to carbon and nutrient cycles. Their growth and role in the ecosystem depend, among other, on its life cycles and habits, floating or semi-aquatic. Although in the last decades, petroliferous activity intensified in the Central Amazon region and so did oil spills, the effect of petroleum on the native aquatic plants is unknown. The present study was designed to test experimentally the survival and morpho-anatomical modifications of the free floating water hyacinth Eichhornia crassipes and the semi-aquatic grass Echinochloa polystachya to 10 different concentrations of crude oil. Higher concentrations of crude oil caused the mortality in both species; however, lethal dose (LD₅₀) values showed that E. polystachya was more sensitive than E. crassipes. Despite the higher tolerance of E. crassipes, the inhibition of root and leaf growth as well as anatomical modifications in leaves were registered in higher concentrations. Additionally, the oil caused a reduction in leaf numbers in both species. Although mortality of the floating species was lower, it may increases over time, since important alterations in morphology and anatomy occurred. These results show that oil spills in the Amazon varzea can cause severe alterations in the aquatic flora and in the floodplain dynamics.     

Leaf and canopy photosynthetic CO2 uptake of a stand of Echinochloa polystachya on the Central Amazon floodplain

The C₄ grass Echinochloa polystachya, which forms dense and extensive monotypic stands on the Varzea floodplains of the Amazon region, provides the most productive natural higher plant communities known. The seasonal cycle of growth of this plant is closely linked to the annual rise and fall of water level over the floodplain surface. Diurnal cycles of leaf photosynthesis and transpiration were measured at monthly intervals, in parallel with measurements of leaf area index, canopy light interception and biomass. By artificial manipulation of the light flux incident on leaves in the field light-response curves of photosynthesis at the top and near to the base of the canopy were generated. Fitted light-response curves of CO₂ uptake were combined with information of leaf area index, incident light and light penetration of the canopy to estimate canopy rates of photosynthesis. Throughout the period in which the floodplains were submerged photosynthetic rates of CO₂ uptake (A) for the emergent leaves were high with a mean of c. 30 mol m^-2 s^-1 at mid-day and occasional values of 40 mol m^-2 s^-1. During the brief dry phase, when the floodplain surface is uncovered, there was a significant depression of A, with mid-day mean values of c. 17 mol m^-2 s^-1. This corresponded with a c. 50% decrease in stomatal conductance, and a c. 35% depression in the ratio of the leaf inter-cellular to external CO₂ concentration (c _i/c _a). During the dry phase, a midday depression of rates of CO₂ assimilation was observed. The lowest leaf area index (F) was c. 2 in November–December, when the flood plain was dry, and again in May, when the rising floodwaters were submerging leaves faster than they were replaced. The maximum F of c. 5 was in August when the floodwaters were receding rapidly. Canopy light interception efficiency varied from 0.90 to 0.98. Calculated rates of canopy photosynthesis exceeded 18 mol C m^-2 mo^-1 throughout the period of flooding, with a peak of 37 mol C m^-2 mo^-1 in August, but declined to 13 mol C m^-2 mo^-1 in November during the dry phase. Estimated uptake of carbon by the canopy from the atmosphere, over 12 months, was 3.57 kg C m^-2. This was insufficient to account for the 3.99 kg C m^-2 of net primary production, measured simultaneously by destructive harvesting. It is postulated that this discrepancy might be accounted for by internal diffusion of CO₂ from the CO₂-rich waters and sediments via the roots and stems to the sites of assimilation in the leaves.     

Construction and characterization of an absolute deletion mutant of Escherichia coli ribonuclease II

Abstract The degradation of mRNA plays a central role in the control of protein synthesis. In Escherichia coli , the rnb gene encodes ribonuclease II (RNase II), one of the two main exonucleases involved in mRNA decay. We have constructed strain CMA201, in which the rnb promoter region and the gene were deleted from the chromosome and replaced by a tet^tr cassette. This is the first rnb absolute deletion mutant that shows the complete absence of rnb -specific mRNA. This strain has growth characteristics similar to the wild-type, even though it has no RNase II activity, and it should be useful in studies of mRNA metabolism.     

Very high productivity of the C4 aquatic grass Echinochloa polystachya in the Amazon floodplain confirmed by net ecosystem CO2 flux measurements

Fluxes of CO₂ and H₂O vapour from dense stands of the C4 emergent macrophyte grass Echinochloa polystachya were measured by eddy covariance in both the low water (LW) and high water (HW, flooded) phases of the annual Amazon river cycle at Manaus, Brazil. Typical clear-sky midday CO₂ uptake rates by the vegetation stand (including detritus, sediment or water surface) were 30 and 35 µmol CO₂ (ground) m^-2 s^-1 in the LW and HW periods, respectively. A rectangular hyperbola model fitted the responses of "instantaneous" (20- or 30-min average) net CO₂ exchange rates to incident photosynthetic photon flux densities (PFD) well. Stand evaporation rates were linearly related to PFD. The major difference in CO₂ uptake rates between the two periods was the larger respiration flux during LW due to the CO₂ efflux from sediment, roots and litter. Integrated 20- or 30-min fluxes were used to derive relationships between daily CO₂ and H₂O vapour fluxes and incident radiation. The daily CO₂ fluxes were almost linearly related to incident radiation, but there was evidence of saturation at the highest daily radiation totals. Annual productivity estimated from the daily model in 1996-1997 agreed closely with that previously estimated for 1985-1986 from a leaf-scale photosynthetic model, but were some 15% less than those derived at that time from biomass harvests. Both CO₂ uptake and water use efficiency were comparable with those found in fertilised maize fields in warm temperate conditions.     

Electrochemical sensing of the behaviour of oligonucleotide lipoplexes at charged interfaces

Complexes between short oligodeoxynucleotides (ODN) with a variable dG(x)dC(y) base composition and liposomes composed of the cationic lipid DOTAP (ODN lipoplexes) were studied by differential pulse voltammetry at a glassy carbon electrode. Since lipoplexes are spontaneously formed by electrostatic interactions, the objective of the voltammetric study was to investigate their behaviour at the electrode surface/solution interface. It was verified that the peak current in the voltammograms for ODN lipoplexes was due to guanosine oxidation and that it was influenced both by the applied adsorption potential and the lipoplex (+/-) charge ratio used. It was found that for low ODN lipoplexes (+/-) charge ratios the peak current obtained was enhanced when compared to that registered with free ODN for the same concentration. This allowed a higher sensitivity in the determination of ODN by differential pulse voltammetry and a limit of detection of 5.5 ng/mL was achieved. A model that explains the organisation of ODN lipoplexes at the electrode surface/solution interface is proposed. The electrochemical results presented account for a better physicochemical characterisation of lipoplexes at charged interfaces, which can be important for the understanding and development of gene therapy vectors based on ODN lipoplexes.     

Voltammetric determination of gamma radiation-induced DNA damage

Homopolydeoxyribonucleotides, poly[dGuo], poly[dAdo], poly[dThd], and poly[dCyd], and calf thymus single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA) aqueous solutions previously exposed to gamma radiation doses between 2 and 35 Gy, were studied by differential pulse voltammetry using a glassy carbon electrode. The interpretation of the voltammetric data was also supported by the electrophoretic migration profile obtained for the same ssDNA and dsDNA gamma-irradiated samples by nondenaturing agarose gel electrophoresis. The generation of 8-oxo-7,8-dihydroguanine, 2,8-dihydroxyadenine, 5-formyluracil, base-free sites, and single- and double-stranded breaks in the gamma-irradiated DNA samples was detected voltammetrically, with the amount depending on the irradiation time. It was found that the current peaks obtained for 8-oxoguanine increase linearly with the radiation dose applied to the nucleic acid sample, and values between 8 and 446 8-oxo-7,8-dihydroguanine (8-oxoGua) per 10(6) guanines per Gy were obtained according to the nucleic acid sample. The results showed that voltammetry can be used for monitoring and simultaneously characterizing different kinds of DNA damage caused by gamma radiation exposure.     

A classification of major natural habitats of Amazonian white-water river floodplains (várzeas)

Most countries sharing the Amazon basin have signed the Ramsar Convention on Wetlands of International Importance but still lack complete wetland inventories, classification systems, and management plans. Amazonian wetlands vary considerably with respect to hydrology, water and soil fertility, vegetation cover, diversity in plant and animal species and primary and secondary productivity. Here, we propose a classification system of major natural habitats of Amazonian white-water river floodplains (várzeas) based on hydrological, water and soil chemistry and biological parameters. The Amazonian várzea is one of the largest Amazonian wetlands. It is exceptionally rich in plant and animal species and plays important roles in landscape history, evolution, hydrology and biogeochemical cycles of the Amazon basin. Most of Amazonia??s rural population lives in or along the várzea, emphasizing the economic importance of its natural resources. Our classification indicates five major systems, which are subdivided into 10 main habitats and up to 40 functional (vegetation) units of which the most important mesohabitats are described. We understand this classification as a dynamic system, as it is open to the inclusion of future research attempts and habitats without affecting the entire classification system. Our classification may be used for scientific purposes, such as comparative studies on biomass, productivity, biogeochemical cycles and biodiversity. Also, because the classification builds on habitat types and/or vegetation and functional units already distinguished by the local population it may be especially useful in guiding intelligent use of várzea habitat for specific management activities, such as agriculture, animal husbandry, forestry, fisheries, and conservation.