Pachypteria sinaitica n. sp. - eine aufgewachsene,austernähnliche muschel aus dem unterkarbon Ägyptens

A pseudomonotide pelecypod-Pachypteria sinaitica n. sp. - is described from Abu Durba Formation (Visé) of southwest Sinai. The new species forms a link with rather similar populations in the Lower Carboniferous of Marocco. Like the oysters, but byssate and cemented with its right valve,P. sinaitica n. sp. built up small limestone beds within a marginal marine environment of sedimentation. As regards the isotopie composition, the carbonates of the shell were secreted in a water of approximately 25° C.It follows, that the littoral waters of the southern Tethys were warmer during the Lower Carboniferous than those of present Red Sea.     

Kaempferol triosides from Reseda muricata

A flavonoid trioside and its coumaryl ester together with seven known flavonoids and five phenolic acids were isolated from the leaves of Reseda muricata. Their structures were elucidated by spectroscopic methods including UV, FAB MS, 1H, 13C and 2D-NMR, DEPT, HMBC and HMQC experiments. The two compounds were identified as kaempferol 3-O-beta-D-glucopyranosyl-(1' --> 2')-O-alpha-L-rhamnopyranoside 7-O-beta-D-glucopyranoside and kaempferol 3-O-beta-D-glucopyranosyl-(1' --> 2')-O-alpha-L rhamnopyranoside 7-O-beta-D-(6'-O-E-coumarylglucopyranoside), respectively.     

Optimized submerged batch fermentation strategy for systems scale studies of metabolic switching in Streptomyces coelicolor A3(2)

Background

Given the complex mechanisms underlying biochemical processes systems biology researchers tend to build ever increasing computational models. However, dealing with complex systems entails a variety of problems, e.g. difficult intuitive understanding, variety of time scales or non-identifiable parameters. Therefore, methods are needed that, at least semi-automatically, help to elucidate how the complexity of a model can be reduced such that important behavior is maintained and the predictive capacity of the model is increased. The results should be easily accessible and interpretable. In the best case such methods may also provide insight into fundamental biochemical mechanisms.

Results

We have developed a strategy based on the Computational Singular Perturbation (CSP) method which can be used to perform a "biochemically-driven" model reduction of even large and complex kinetic ODE systems. We provide an implementation of the original CSP algorithm in COPASI (a COmplex PAthway SImulator) and applied the strategy to two example models of different degree of complexity - a simple one-enzyme system and a full-scale model of yeast glycolysis.

Conclusion

The results show the usefulness of the method for model simplification purposes as well as for analyzing fundamental biochemical mechanisms. COPASI is freely available at http://www.copasi.org.     

The IgM and IgG antibody responses in iron-deficient and iron-loaded mice

The humoral immune response was evaluated in male CD-1 mice fed the iron deficient (7 ppm Fe), iron sufficient (120 ppm Fe), and high-iron diets (3000 or 5000 ppm Fe) for 54 d. The IgM and IgG antibody responses against sheep erythrocytes (SRBC) determined by hemolytic plaque assay were suppressed by 65.4 and 51.2%, respectively, in the iron deficient mice. Subclinical iron deficiency was manifested by a marked reduction in hepatic iron concentration without any changes in hematocrit or body weight gain. In contrast, consumption of high-iron diets caused a marked accumulation of iron in the liver and a twofold reduction in the IgM antibody response without alteration in the IgG response. The suppression of the IgG antibody response in the iron deficient mice, however, did not result in a compensatory increase in delayed type hypersensitivity response.     

Isozyme Variation in Wild and Cultivated Species of the Genus Trifolium L. (Leguminosae)

Isozyme patterns for PGI (phosphoglucoisomerase), MDH (malatedehydrogenase), EST (esterase) and SOD (superoxide dismutase)were evaluated in 36 accessions of eight Trifolium species,namely T. incarnatum, T. polymorphum, T. pratense, T. repens,T. resupinatum, T. riograndense, T. subterraneum and T. vesiculosum.Similarity between species and accessions was estimated by Jaccard’ssimilarity index based on presence or absence of bands. TheUPGMA method was utilized for the groupings and dendrogram constructionwith the aid of the NTSYS-PC program. Interspecific similaritywas low (J 0.351). The dendrogram presented eight groups, eachone corresponding to a taxonomic species. Most of the accessionsof the same species grouped together at J > 0.50, exceptT. riograndense, T. repens and T. pratense. These three speciesshowed the lowest similarity between their accessions, reflectinghigher intraspecific variation. Some accession-specific bandswere identified. The species groupings are consistent with traditionaltaxonomic species delimitation. Therefore isozyme patterns,especially when several systems are employed, are useful andreliable biochemical markers for the taxonomic delimitationand characterization of Trifolium germplasm. Copyright 2000Annals of Botany Company Genetic diversity, germplasm characterization, isoenzymatic variability, biochemical markers, isozymes,Trifolium     

Asynapsis in Lolium perenne

Eighteen plants displaying varying degrees of asynapsis ranging from weak to very strong were found among four out of six populations of Lolium perenne L. (2n=14) which had been subjected to three cycles of directional phenotypic selection for productivity of green material. No plants were found displaying univalents in the original generation but the incidence increased with cycles of selection, indicating the genetic control and differential distribution of asynaptic genes among these populations. — The analysis of univalents and chiasma frequency of pollen mother cells (PMC) of six partially asynaptic plants chosen for detailed study revealed that univalents occurred throughout all PMC chiasma classes irrespective of chiasma frequency, but the higher the chiasma frequency of any PMC the less the likelihood of univalents occurring. The relationship between chiasma frequency and univalent frequency per PMC per plant was negative. — Mean chiasma frequency per bivalent increased for the asynaptic cells in comparison with the normal in both the weak and medium asynaptic groups which was explained by the availability of additional chiasmata for redistribution.     

Tuberculosis patients co-infected with Mycobacterium bovis and Mycobacterium tuberculosis in an urban area of Brazil

In this cross-sectional study, mycobacteria specimens from 189 tuberculosis (TB) patients living in an urban area in Brazil were characterised from 2008-2010 using phenotypic and molecular speciation methods (pncA gene and oxyR pseudogene analysis). Of these samples, 174 isolates simultaneously grew on Löwenstein-Jensen (LJ) and Stonebrink (SB)-containing media and presented phenotypic and molecular profiles of Mycobacterium tuberculosis, whereas 12 had molecular profiles of M. tuberculosis based on the DNA analysis of formalin-fixed paraffin wax-embedded tissue samples (paraffin blocks). One patient produced two sputum isolates, the first of which simultaneously grew on LJ and SB media and presented phenotypic and molecular profiles of M. tuberculosis, and the second of which only grew on SB media and presented phenotypic profiles of Mycobacterium bovis. One patient provided a bronchial lavage isolate, which simultaneously grew on LJ and SB media and presented phenotypic and molecular profiles of M. tuberculosis, but had molecular profiles of M. bovis from paraffin block DNA analysis, and one sample had molecular profiles of M. tuberculosis and M. bovis identified from two distinct paraffin blocks. Moreover, we found a low prevalence (1.6%) of M. bovis among these isolates, which suggests that local health service procedures likely underestimate its real frequency and that it deserves more attention from public health officials.     

The diagnostic efficacy of circulating miRNAs in monitoring the early development of colitis-induced colorectal cancer

Early detection of colorectal cancer and monitoring the progress in colon carcinogenesis stages is essential to reduce mortality. Therefore, there is continuous search for noninvasive biomarkers with high stability and good sensitivity and specificity. miRNAs have attracted attention as promising biomarkers as they are stably expressed in circulation. The aim of our study is to evaluate the aberrant expression of circulating miRNAs during the stepwise progress of colitis-associated colon cancer. This was accomplished through assessing the expression levels of five miRNAs (miR-141, miR-15b, miR-17-3p, miR-21, and miR-29a) in serum and their corresponding tissue samples through the different cycles of colorectal carcinogenesis cascade using the azoxymethane/dextran sulfate sodium murine model. We also compared the diagnostic performance of these selected miRNAs with the conventional tumor biomarkers CEA and CA 19-9. The results of our study revealed that the expression levels of those miRNAs were dynamically changing in accordance with the tumor development state. Moreover, their aberrant expression in serum was statistically correlated with that in tissue. Our data also revealed that serum miR-15b, miR-21, and miR-29a showed the best performance in terms of diagnostic power. Our findings highlight the efficiency of these circulating miRNAs not only for early diagnostics purposes, but also for monitoring progress in the colorectal carcinogenesis process, and therefore encouraging integrating these noninvasive biomarkers into the clinical diagnostic settings beside the traditional diagnostic markers for accurate screening of the early progress of colon carcinogenesis.     

Efficiency of Trichoderma harzianum as a biocontrol agent in combination with humate and chitosan against Meloidogyne incognita on tomato

Abstract

A pot trial was conducted to estimate the role of Trichoderma harzianum alone or in combination with two organic substances, potassium humate and chitosan in controlling Meloidogyne incognita on tomato. All treatments caused greater decreases in parameters of M. incognita in comparison to the control treatment (nematode only) and this led to noticeable enhancements in growth and yield of tomato. The lowest numbers of eggmasses, eggs/eggmass, galls/root, females/root, and second stage juveniles/250?g soil were recorded due to the combination of T. harzianum (10¹⁰ spore/ml) with chitosan and potassium humate after 120 days from the transplanting of tomato seedlings. Also, this treatment showed the best promotion for all tomato parameters (lengths and weights of shoots and roots, and productivity). So, mixing chitosan, potassium and T. harzianum is highly recommended to be used as an effective bio-nematicide against M. incognita on tomato plants.