Interspecific Infanticide and Infant‐Directed Aggression by Spider Monkeys (Ateles hybridus) in a Fragmented Forest in Colombia

Interspecific aggression amongst nonhuman primates is rarely observed and has been mostly related to scenarios of resource competition. Interspecific infanticide is even rarer, and both the ultimate and proximate socio‐ecological factors explaining this behavior are still unclear. We report two cases of interspecific infanticide and five cases of interspecific infant‐directed aggression occurring in a well‐habituated primate community living in a fragmented landscape in Colombia. All cases were initiated by male brown spider monkeys (Ateles hybridus) and were directed toward infants of either red howler monkeys (Alouatta seniculus: n = 6 cases) or white‐fronted capuchins (Cebus albifrons: n = 1 case). One individual, a subadult spider monkey male, was involved in all but one case of interspecific infanticide or aggression. Other adult spider monkeys participated in interspecific aggression that did not escalate into potentially lethal encounters. We suggest that competition for food resources and space in a primate community living in high population densities and restricted to a forest fragment of ca. 65 ha might partly be driving the observed patterns of interspecific aggression. On the other hand, the fact that all but one case of interspecific infanticide and aggression involved the only subadult male spider monkey suggests this behavior might either be pathological or constitute a particular case of redirected aggression. Even if the underlying principles behind interspecific aggression and infanticide are poorly understood, they represent an important factor influencing the demographic trends of the primate community at this study site. Am. J. Primatol. 74:990‐997, 2012. © 2012 Wiley Periodicals, Inc.     

Combining Breeding Bird Survey and Christmas Bird Count Data to Evaluate Seasonal Components of Population Change in Northern Bobwhite

Abstract Annual surveys of wildlife populations provide information about annual rates of change in populations but provide no information about when such changes occur. However, by combining data from 2 annual surveys, conducted in different parts of the year, seasonal components of population change can be estimated. We describe a hierarchical model for simultaneous analysis of 2 continent-scale monitoring programs. The Christmas Bird Count is an early winter survey, whereas the North American Breeding Bird Survey is conducted in June. Combining information from these surveys permits estimation of seasonal population variance components and improves estimation of long-term population trends. The composite analysis also controls for survey-specific sampling effects. We applied the model to estimation of population change in northern bobwhites (Colinus virginianus). Over the interval 1969–2004, bobwhite populations declined, with trend estimate of −3.56% per year (95% CI = [−3.80%, −3.32%]) in the surveyed portion of their range. Our analysis of seasonal population variance components indicated that northern bobwhite populations changed more in the winter and spring portion of the year than in the summer and fall portion of the year. (JOURNAL OF WILDLIFE MANAGEMENT 72(1):44–51; 2008)     

Illumination of cryptic species boundaries in long-tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale), with new insights into geographic variation and distributional constraints

The increasing use of mitochondrial DNA (mtDNA) to explore and test species limits among morphologically similar species is potentially compromised by phenomena poorly reflective of organismal history and speciation, including (but not limited to) stochastic lineage sorting and gene flow. In situations where molecular data are only available from a single gene or linkage partition (e.g. mtDNA), corroboration of suspected species boundaries should be sought from independent lines of evidence, such as morphology. Recent attempts to delimit species using mtDNA and morphology have either implicitly or explicitly ignored the possibility that distinct species can occur in direct sympatry throughout much of their range, presumably because such situations are believed to be rare. We examined phylogenetic relationships within the long‐tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale spp.) from Madagascar. Current taxonomy recognizes two broadly sympatric species, though as many as six have been described. Given that alpha taxonomy within shrew tenrecs has been controversial, and that patterns of morphological variation can be especially difficult to assess for this group, some authors have suggested that additional cryptic species may exist. To examine this possibility, we conducted a phylogenetic study using the mitochondrial NADH dehydrogenase subunit 2 gene and a morphometric analysis of 29 craniodental, postcranial, and external measurements from a broad geographical sample of long‐tailed shrew tenrecs. The two data sets were nearly perfectly congruent in identifying four groups that can be classified as species, thereby doubling the currently recognized number of species. We present previously unrecognized distributional evidence consistent with our conclusions and provide an empirical example of how a revised understanding of species limits alters inferences of geographic variation and species coexistence, particularly with respect to fine‐scale habitat partitioning. The results of this study suggest that certain species pairs, previously assumed to be single species occupying broad elevational ranges, are actually reproductively isolated units that are partitioning their environment along elevational lines. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 83 , 1–22.     

A Hierarchical Model for Estimating Change in American Woodcock Populations

Abstract The Singing-Ground Survey (SGS) is a primary source of information on population change for American woodcock (Scolopax minor). We analyzed the SGS using a hierarchical log-linear model and compared the estimates of change and annual indices of abundance to a route regression analysis of SGS data. We also grouped SGS routes into Bird Conservation Regions (BCRs) and estimated population change and annual indices using BCRs within states and provinces as strata. Based on the hierarchical model–based estimates, we concluded that woodcock populations were declining in North America between 1968 and 2006 (trend = −0.9%/yr, 95% credible interval: −1.2, −0.5). Singing-Ground Survey results are generally similar between analytical approaches, but the hierarchical model has several important advantages over the route regression. Hierarchical models better accommodate changes in survey efficiency over time and space by treating strata, years, and observers as random effects in the context of a log-linear model, providing trend estimates that are derived directly from the annual indices. We also conducted a hierarchical model analysis of woodcock data from the Christmas Bird Count and the North American Breeding Bird Survey. All surveys showed general consistency in patterns of population change, but the SGS had the shortest credible intervals. We suggest that population management and conservation planning for woodcock involving interpretation of the SGS use estimates provided by the hierarchical model.     

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping

Background

Natural selection has molded evolution across all taxa. At an arguable date of around 330,000 years ago there were already at least two different types of cattle that became ancestors of nearly all modern cattle, the Bos taurus taurus more adapted to temperate climates and the tropically adapted Bos taurus indicus. After domestication, human selection exponentially intensified these differences. To better understand the genetic differences between these subspecies and detect genomic regions potentially under divergent selection, animals from the International Bovine HapMap Experiment were genotyped for over 770,000 SNP across the genome and compared using smoothed F_ST. The taurine sample was represented by ten breeds and the contrasting zebu cohort by three breeds.

Results

Each cattle group evidenced similar numbers of polymorphic markers well distributed across the genome. Principal components analyses and unsupervised clustering confirmed the well-characterized main division of domestic cattle. The top 1% smoothed F_ST, potentially associated to positive selection, contained 48 genomic regions across 17 chromosomes. Nearly half of the top F_ST signals (n = 22) were previously detected using a lower density SNP assay. Amongst the strongest signals were the BTA7:~50 Mb and BTA14:~25 Mb; both regions harboring candidate genes and different patterns of linkage disequilibrium that potentially represent intrinsic differences between cattle types. The bottom 1% of the smoothed F_ST values, potentially associated to balancing selection, included 24 regions across 13 chromosomes. These regions often overlap with copy number variants, including the highly variable region at BTA23:~24 Mb that harbors a large number of MHC genes. Under these regions, 318 unique Ensembl genes are annotated with a significant overrepresentation of immune related pathways.

Conclusions

Genomic regions that are potentially linked to purifying or balancing selection processes in domestic cattle were identified. These regions are of particular interest to understand the natural and human selective pressures to which these subspecies were exposed to and how the genetic background of these populations evolved in response to environmental challenges and human manipulation.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-14-876) contains supplementary material, which is available to authorized users.     

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle

Background

Signatures of selection are regions in the genome that have been preferentially increased in frequency and fixed in a population because of their functional importance in specific processes. These regions can be detected because of their lower genetic variability and specific regional linkage disequilibrium (LD) patterns.

Methods

By comparing the differences in regional LD variation between dairy and beef cattle types, and between indicine and taurine subspecies, we aim at finding signatures of selection for production and adaptation in cattle breeds. The VarLD method was applied to compare the LD variation in the autosomal genome between breeds, including Angus and Brown Swiss, representing taurine breeds, and Nelore and Gir, representing indicine breeds. Genomic regions containing the top 0.01 and 0.1 percentile of signals were characterized using the UMD3.1 Bos taurus genome assembly to identify genes in those regions and compared with previously reported selection signatures and regions with copy number variation.

Results

For all comparisons, the top 0.01 and 0.1 percentile included 26 and 165 signals and 17 and 125 genes, respectively, including TECRL, BT.23182 or FPPS, CAST, MYOM1, UVRAG and DNAJA1.

Conclusions

The VarLD method is a powerful tool to identify differences in linkage disequilibrium between cattle populations and putative signatures of selection with potential adaptive and productive importance.     

Selective predation by Lestes (Odoiiata, Lestidae) on littoral microcrustacea

• 1 Two experimental approaches were used to examine the predation risk of six littoral cladoceran and ostracod species to two size classes of the damselfly Lestes sp. Behavioural observations were conducted in a 2–1 arena and predation rate experiments in 1–1 jars in the laboratory.
• 2 Behavioural observations revealed that attack and capture efficiencies by Lestes were higher on smaller cladocerans (Polyphemus and Ceriodaphnia) than on other taxa. Small Lestes had little success ingesting the small ostracod Cypridopsis, whereas larger Lestes captured and ate it easily.
• 3 Predation-rate experiments showed that Lestes has a clear preference for smaller cladocerans over both a large cladoceran (Simocephatus) and all three ostracods (Cypricercus, Cyclocypris, and Cypridopsis). Most Lestes were unable to consume the larger Cypricercus.
• 4 Attack rates and predation rates were highly variable among individual predators.
• 5 These data indicate that damselfly larvae are size selective and consume all but very large cladocerans more readily than ostracods.