Reduction of molecular gas diffusion through gaskets in leaf gas exchange cuvettes by leaf‐mediated pores

There is an ongoing debate on how to correct leaf gas exchange measurements for the unavoidable diffusion leakage that occurs when measurements are done in non‐ambient CO₂ concentrations. In this study, we present a theory on how the CO₂ diffusion gradient over the gasket is affected by leaf‐mediated pores (LMP) and how LMP reduce diffusive exchange across the gaskets. Recent discussions have so far neglected the processes in the quasi‐laminar boundary layer around the gasket. Counter intuitively, LMP reduce the leakage through gaskets, which can be explained by assuming that the boundary layer at the exterior of the cuvette is enriched with air from the inside of the cuvette. The effect can thus be reduced by reducing the boundary layer thickness. The theory clarifies conflicting results from earlier studies. We developed leaf adaptor frames that eliminate LMP during measurements on delicate plant material such as grass leaves with circular cross section, and the effectiveness is shown with respiration measurements on a harp of Deschampsia flexuosa leaves. We conclude that the best solution for measurements with portable photosynthesis systems is to avoid LMP rather than trying to correct for the effects.     

Climate change at the landscape scale: predicting fine-grained spatial heterogeneity in warming and potential refugia for vegetation

Current predictions of how species will respond to climate change are based on coarse‐grained climate surfaces or idealized scenarios of uniform warming. These predictions may erroneously estimate the risk of extinction because they neglect to consider spatially heterogenous warming at the landscape scale or identify refugia where species can persist despite unfavourable regional climate. To address this issue, we investigated the heterogeneity in warming that has occurred in a 10 km × 10 km area from 1972 to 2007. We developed estimates by combining long‐term daily observations from a limited number of weather stations with a more spatially comprehensive dataset (40 sites) obtained during 2005–2006. We found that the spatial distribution of warming was greater inland, at lower elevations, away from streams, and at sites exposed to the northwest (NW). These differences corresponded with changes in weather patterns, such as an increasing frequency of hot, dry NW winds. As plant species were biased in the topographic and geographic locations they occupied, these differences meant that some species experienced more warming than others, and are at greater risk from climate change. This species bias could not be detected at coarser scales. The uneven seasonal nature of warming (e.g. more warming in winter, minimums increased more than maximums) means that climate change predictions will vary according to which predictors are selected in species distribution models. Models based on a limited set of predictors will produce erroneous predictions when the correct limiting factor is not selected, and this is difficult to avoid when temperature predictors are correlated because they are produced using elevation‐sensitive interpolations. The results reinforce the importance of downscaling coarse‐grained (∼50 km) temperature surfaces, and suggest that the accuracy of this process could be improved by considering regional weather patterns (wind speed, direction, humidity) and topographic exposure to key wind directions.     

Inferring Geographic Isolation of Wolverines in California Using Historical DNA

ABSTRACT Delineating a species' geographic range using the spatial distribution of museum specimens or even contemporary detection-non-detection data can be difficult. This is particularly true at the periphery of a species range where species' distributions are often disjunct. Wolverines (Gulo gulo) are wide-ranging mammals with discontinuous and potentially isolated populations at the periphery of their range. One potentially disjunct population occurred in the Sierra Nevada Mountains, California, USA, and appears to have been extirpated by the 1930s. Many early 20th century naturalists believed that this population was connected to other populations occurring in the Cascade Range of northern California, Oregon, and Washington, USA, but a recent analysis of historical records suggests that California wolverines were isolated from other populations in North America. We used DNA extracted from museum specimens to examine whether California wolverines were isolated. Both nuclear and mitochondrial DNA data indicate that California wolverines were genetically distinct from extant populations, suggesting long-term isolation. We identified 2 new control region (mitochondrial DNA) haplotypes located only within California. We used these data and referenced sequences from the Rocky Mountains, USA, to make inferences regarding potential wolverine translocations into California. In addition, we used these genetic data to make inferences about wolverine conservation throughout western North America.     

Phosphorus recycling in photorespiration maintains high photosynthetic capacity in woody species

Leaf photosynthetic CO₂ responses can provide insight into how major nutrients, such as phosphorus (P), constrain leaf CO₂ assimilation rates (A_net). However, triose‐phosphate limitations are rarely employed in the classic photosynthesis model and it is uncertain as to what extent these limitations occur in field situations. In contrast to predictions from biochemical theory of photosynthesis, we found consistent evidence in the field of lower A_net in high [CO₂] and low [O₂] than at ambient [O₂]. For 10 species of trees and shrubs across a range of soil P availability in Australia, none of them showed a positive response of A_net at saturating [CO₂] (i.e. A_max) to 2 kPa O₂. Three species showed >20% reductions in A_max in low [O₂], a phenomenon potentially explained by orthophosphate (P_i) savings during photorespiration. These species, with largest photosynthetic capacity and P_i > 2 mmol P m^?2, rely the most on additional P_i made available from photorespiration rather than species growing in P‐impoverished soils. The results suggest that rarely used adjustments to a biochemical photosynthesis model are useful for predicting A_max and give insight into the biochemical limitations of photosynthesis rates at a range of leaf P concentrations. Phosphate limitations to photosynthetic capacity are likely more common in the field than previously considered.     

Reconciling the optimal and empirical approaches to modelling stomatal conductance

Models of vegetation function are widely used to predict the effects of climate change on carbon, water and nutrient cycles of terrestrial ecosystems, and their feedbacks to climate. Stomatal conductance, the process that governs plant water use and carbon uptake, is fundamental to such models. In this paper, we reconcile two long‐standing theories of stomatal conductance. The empirical approach, which is most commonly used in vegetation models, is phenomenological, based on experimental observations of stomatal behaviour in response to environmental conditions. The optimal approach is based on the theoretical argument that stomata should act to minimize the amount of water used per unit carbon gained. We reconcile these two approaches by showing that the theory of optimal stomatal conductance can be used to derive a model of stomatal conductance that is closely analogous to the empirical models. Consequently, we obtain a unified stomatal model which has a similar form to existing empirical models, but which now provides a theoretical interpretation for model parameter values. The key model parameter, g₁, is predicted to increase with growth temperature and with the marginal water cost of carbon gain. The new model is fitted to a range of datasets ranging from tropical to boreal trees. The parameter g₁ is shown to vary with growth temperature, as predicted, and also with plant functional type. The model is shown to correctly capture responses of stomatal conductance to changing atmospheric CO₂, and thus can be used to test for stomatal acclimation to elevated CO₂. The reconciliation of the optimal and empirical approaches to modelling stomatal conductance is important for global change biology because it provides a simple theoretical framework for analyzing, and simulating, the coupling between carbon and water cycles under environmental change.     

Effects of Tissue Collection Methods on Morphometrics and Survival of Captive Neonatal Northern Bobwhite

ABSTRACT We assessed effects of tissue collection methods (i.e., patagial microbiopsy and down feathers) and chick age at sampling on morphometrics and 21-day survival of 600 captive neonatal northern bobwhite (Colinus virginianus). We observed minimal effects on morphometrics and no difference in survival among patagial microbiopsy (x̄ = 0.96 ± 0.03), down feathers (x̄ = 0.92 ± 0.04), and control (x̄ = 0.86 ± 0.05) methods. DNA analysis from patagial microbiopsy, down feather, and egg tooth samples showed greater concentrations of DNA from patagial microbiopsy (x̄ = 10.28 ± 1.74 μg/ml) than either down feather (x̄ = 4.10 ± 1.74 μg/ml) or egg teeth (x̄ = 2.35 ± 1.74 μg/ml).     

WRITING AMISH CULTURE INTO GENES: BIOLOGICAL REDUCTIONISM IN A STUDY OF MANIC DEPRESSION

Critical realism is used to explore the problem of reductionism in a classic (the Amish Study) andwidely-cited study of manic depression. Along withrelated ideas drawn from the works of R.C.Lewontin, Arthur Kleinman, and Byron Good, it isshown that natural and social scientists deployatomistic and holistic reductionism; this, in turn,leads to the construction of artificially closedsystems' through the control of variables orexogenous forces. The psychiatric genetic studies ofthe Amish were predicated on the assumption thatAmish society is homogeneous and unchanging and,therefore, closed. We conclude by arguing thatinteractions between behaviors and genes, where theyexist, take place only within open systems, characterizedby multiple mechanisms – social andbiological – that together co-determineany event. To move forward, it is argued, behavior and generesearch requires recognition and resolution of thephilosophical conundrums that accompany reductionism.     

Characteristics and abundance of vertebrate-dispersed fruits in temperate wet sclerophyll forest in southeastern Australia

The diversity, abundance and display characteristics of plants producing fleshy fruits were recorded in wet sclerophyll forest near Melbourne, Victoria. Fruit characteristics and nutrient content were recorded for 14 species of fruits occurring in the forest and these characteristics compared with similar studies in north temperate and tropical regions. Plants producing fleshy fruits were confined to understorey layers and comprised 13.5% of the native vascular flora. Most species displayed fruits conspicuously by ripening brightly coloured fruits synchronously in large displays. Annual fruit production at three sites ranged from 6.98 to 37.01 kg/ha. Fruit mass, seed number and size were variable but the proportion of pulp per fruit remained remarkably consistent between species. Most fruit pulp contained high quantities of soluble carbohydrates and little lipid or protein. Fruits from wet sclerophyll forest did not differ from fruits from other geographic areas in eight characteristics measured. Although taxonomically distinct, the species in wet sclerophyll forest were not significantly different from other temperate fruits, suggesting that fruit characteristics are under the influence of factors other than phylogeny.     

Development and characterization of microsatellite markers in the Point Arena mountain beaver Aplodontia rufa nigra

The Point Arena mountain beaver (Aplodontia rufa nigra) is an endangered subspecies. Efforts to recover this sub‐species will be aided by advances in molecular genetics, specifically the ability to estimate population size using noninvasive genetic sampling. Here we report on the development of nine polymorphic loci for the Point Arena mountain beaver. These markers provide us sufficient power to distinguish individuals, and thus can be used for calculating population size and delineating population substructure.