The mechanisms of iron isotope fractionation produced during dissimilatory Fe(III) reduction by Shewanella putrefaciens and Geobacter sulfurreducens

Microbial dissimilatory iron reduction (DIR) is widespread in anaerobic sediments and is a key producer of aqueous Fe(II) in suboxic sediments that contain reactive ferric oxides. Previous studies have shown that DIR produces some of the largest natural fractionations of stable Fe isotopes, although the mechanism of this isotopic fractionation is not yet well understood. Here we compare Fe isotope fractionations produced by similar cultures of Geobacter sulfurreducens strain PCA and Shewanella putrefaciens strain CN32 during reduction of hematite and goethite. Both species produce aqueous Fe(II) that is depleted in the heavy Fe isotopes, as expressed by a decrease in ⁵⁶Fe/⁵⁴Fe ratios or δ⁵⁶Fe values. The low δ⁵⁶Fe values for aqueous Fe(II) produced by DIR reflect isotopic exchange among three Fe inventories: aqueous Fe(II) (Fe(II)_aq), sorbed Fe(II) (Fe(II)_sorb), and a reactive Fe(III) component on the ferric oxide surface (Fe(III)_reac). The fractionation in ⁵⁶Fe/⁵⁴Fe ratios between Fe(II)_aq and Fe(III)_reac was –2.95‰, and this remained constant over the timescales of the experiments (280 d). The Fe(II)_aq – Fe(III)_reac fractionation was independent of the ferric Fe substrate (hematite or goethite) and bacterial species, indicating a common mechanism for Fe isotope fractionation during DIR. Moreover, the Fe(II)_aq – Fe(III)_reac fractionation in ⁵⁶Fe/⁵⁴Fe ratios during DIR is identical within error of the equilibrium Fe(II)_aq – ferric oxide fractionation in abiological systems at room temperatures. This suggests that the role of bacteria in producing Fe isotope fractionations during DIR lies in catalyzing coupled atom and electron exchange between Fe(II)_aq and Fe(III)_reac so that equilibrium Fe isotope partitioning occurs. Although Fe isotope fractionation between Fe(II)_aq and Fe(III)_reac remained constant, the absolute δ⁵⁶Fe values for Fe(II)_aq varied as a function of the relative proportions of Fe(II)_aq, Fe(II)_sorb, and Fe(III)_reac during reduction. The temporal variations in these proportions were unique to hematite or goethite but independent of bacterial species. In the case of hematite reduction, the small measured Fe(II)_aq – Fe(II)_sorb fractionation of −0.30‰ in ⁵⁶Fe/⁵⁴Fe ratios, combined with the small proportion of Fe(II)_sorb, produced insignificant (<0.05‰) isotopic effects due to sorption of Fe(II). Sorption of Fe(II) produced small, but significant effects during reduction of goethite, reflecting the higher proportion of Fe(II)_sorb and larger measured Fe(II)_aq – Fe(II)_sorb fractionation of –0.87‰ in ⁵⁶Fe/⁵⁴Fe ratios for goethite. The isotopic effects of sorption on the δ⁵⁶Fe values for Fe(II)_aq were largest during the initial stages of reduction when Fe(II)_sorb was the major ferrous Fe species during goethite reduction, on the order of 0.3 to 0.4‰. With continued reduction, however, the isotopic effects of sorption decreased to <0.2‰. These results provide insight into the mechanisms that produce Fe isotope fractionation during DIR, and form the basis for interpretation of Fe isotope variations in modern and ancient natural systems where DIR may have driven Fe cycling.     

Population genomics of the inbred Scandinavian wolf

The Scandinavian wolf population represents one of the genetically most well-characterized examples of a severely bottlenecked natural population (with only two founders), and of how the addition of new genetic material (one immigrant) can at least temporarily provide a 'genetic rescue'. However, inbreeding depression has been observed in this population and in the absence of additional immigrants, its long-term viability is questioned. To study the effects of inbreeding and selection on genomic diversity, we performed a genomic scan with approximately 250 microsatellite markers distributed across all autosomes and the X chromosome. We found linkage disequilibrium (LD) that extended up to distances of 50 Mb, exceeding that of most outbreeding species studied thus far. LD was particularly pronounced on the X chromosome. Overall levels of observed genomic heterozygosity did not deviate significantly from simulations based on known population history, giving no support for a general selection for heterozygotes. However, we found evidence supporting balancing selection at a number of loci and also evidence suggesting directional selection at other loci. For markers on chromosome 23, the signal of selection was particularly strong, indicating that purifying selection against deleterious alleles may have occurred even in this very small population. These data suggest that population genomics allows the exploration of the effects of neutral and non-neutral evolution on a finer scale than what has previously been possible.     

Foggy days and dry nights determine crown‐level water balance in a seasonal tropical montane cloud forest

The ecophysiology of tropical montane cloud forest (TMCF) trees is influenced by crown‐level microclimate factors including regular mist/fog water inputs, and large variations in evaporative demand, which in turn can significantly impact water balance. We investigated the effect of such microclimatic factors on canopy ecophysiology and branch‐level water balance in the dry season of a seasonal TMCF in Veracruz, Mexico, by quantifying both water inputs (via foliar uptake, FU) and outputs (day‐ and night‐time transpiration, NT). Measurements of sap flow, stomatal conductance, leaf water potential and pressure–volume relations were obtained in Quercus lanceifolia, a canopy‐dominant tree species. Our results indicate that FU occurred 34% of the time and led to the recovery of 9% (24 ± 9.1 L) of all the dry‐season water transpired from individual branches. Capacity for FU was independently verified for seven additional common tree species. NT accounted for approximately 17% (46 L) of dry‐season water loss. There was a strong correlation between FU and the duration of leaf wetness events (fog and/or rain), as well as between NT and the night‐time vapour pressure deficit. Our results show the clear importance of fog and NT for the canopy water relations of Q. lanceifolia.     

Variation among populations of Galapagos land iguanas (Conolophus): contrasts of phylogeny and ecology

A phylogenetic scheme derived via multivariate analyses of adaptively neutral scale characteristics is compared to patterns of ecological adaptation in body size and shape, hatchling size, clutch size, and reproductive seasonality, in extant populations of Galapagos land iguanas (genus Conolophus). Three groups of land iguana populations are identified, the oldest being the population of Isla Santa Fe, followed by the populations of the central islands (Santa Cruz, Plaza Sur and Baltra), the youngest populations are those of the western islands (Fernandina and Isabela). Patterns of ecological similarity among these populations are not concordant with phylogenetic lineage. Populations most similar in ecological characteristics are often phylogenetically divergent. Adaptation to local conditions by iguana populations is apparently more important than phylogenetic constraint in explaining variation in ecological characteristics. The assumption that phylogenetically closely-related organisms are also ecologically more similar than less closely-related organisms is not supported by this evidence. Some previous studies may have been misled by using ecological characteristics to derive phylogenetic lineages, resulting in circular support of the assumption.     

Pair Formation in California Condors

SYNOPSIS. Pair formation is a prerequisite for reproductionin California condors and exploring the process has been centralto the captive breeding program for this endangered species.Observations show that once birds reach sexual maturity theycan form pairs within a matter of months; even birds who havelost or been separated from their mates will successfully bondwith others. However, some adults who are housed together showlittle indication of pairing. When such birds are placed withother potential mates they frequently successfully pair andproduce young, suggesting that individual differences play arole in pair formation. We recommend that adults who have notbonded within two years be housed with different potential mates. Condors raised together may or may not form pair bonds uponreaching sexual maturity; unfamiliar condors introduced at fouryears of age or older will form pair bonds. In the four caseswhere pairings have been successful the male initiates moreintrapair interactions with aggressive behavior than does thefemale. Unpaired condors housed in groups do show courtshipand the most dominant birds, usually males, are the most activein giving wings-out/head-down displays. Displays may be directedto males or females and may signal dominance and/or interest.Displays may be followed by mounts and one female may crowdin front of the bird to whom a male is displaying, increasingthe chances that she will receive the display and be mounted.Displaying and the response to displaying birds may be mechanismswhich influence mate selection.     

Postcranial element shape and function: assessing locomotor mode in extant and extinct mustelid carnivorans

Assessment of locomotor modes in fossil taxa must often be made on the basis of heavily fragmented postcranial material. Previous authors have used quantitative methods to determine locomotor function from whole postcranial elements. The goals of this project were to assess the ability of element shape to discern between locomotor modes through landmark analysis, and to apply the results to assessment of fossils. Results suggest that element shape is a good predictor of function, but that different elements have different predictive capacities for each locomotor mode. Additionally, a relationship between size and shape exists that appears to drive morphological differentiation in the group. Finally, data from the extant sample were applied to fossil material of the extinct Plio-Pleistocene taxon Trigonictis . The results suggest that the locomotor mode of Trigonictis was generalized and probably an intermediate between the half-bound locomotion found in weasels and ferrets and the scansorial locomotion of martens and fishers.  © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 150 , 895–914.     

Impacts of plant roots on soil CO cycling and soil–atmosphere CO exchange

Carbon monoxide (CO) plays a major role in tropospheric chemical dynamics. Accordingly, global CO budgets have been reasonably well documented. Atmospheric CO consumption by soils contributes significantly to these budgets, with the magnitude of the sink generally considered to reflect a balance between microbial uptake and abiological production. However, assays of live fine roots showed that diverse intact plants produced carbon monoxide at net rates ranging from 2 to 3000 mµg gdw⁻⁻¹ d⁻⁻¹. CO production was greater for legumes than nonlegumes, and primarily associated with nodules. Excised roots from woody and herbaceous plants produced CO at comparable rates. CO production rates were similar for roots of intact plants and roots excised from those plants. The magnitude of net CO fluxes from roots was determined in part by the balance between simultaneous production and consumption. Surface sterilization of roots indicated that CO consumption was due, in part, rhizoplane CO-oxidizing bacteria, but maximum CO consumption rates were typically only a small fraction of net production rates. Assays in a Brazilian agroecosystem indicated that root CO production affects soil–atmosphere CO exchange. Estimates of global CO production rates indicated that roots contribute about 170–260 Tg CO to the soil atmosphere annually, an amount comparable to current estimates of atmospheric CO uptake by soils, and much larger than estimates of net abiological soil CO production.     

Photo-Identification of Sea Otters Using Nose Scars

Abstract: We evaluated the use of naturally occurring nose scars to identify individual sea otters (Enhydra lutris) in Simpson Bay, Prince William Sound, Alaska, USA. We spent 520 hours over 103 days conducting photo-identification surveys from June to August 2002 and 2003. Altogether, we identified 114 individuals. The number of sightings per individual ranged from 1 to 26, with an average of 3.3. The maximum number of sightings of an individual within a single year was 19. We saw 54 otters (47%)on >1 day, with an average of 8.1 sightings per individual for those seen more than once. We identified 8 individuals (19% of those identified in 2002) in both years. Males and otters of undetermined sex that we first sighted in June had the highest re-sighting rates. We considered 45% of all individuals encountered identifiable from nose scars. Nose scars were present in 63% (n = 19) of males, 45% (n = 45) of females, and 40% (n = 49) of otters of undetermined sex. Our results are similar to the results of photo-identification studies of other marine mammals, suggesting that this technique may be a useful tool for the individual identification of sea otters as well.     

Dimeric DOTA-α-Melanocyte-Stimulating Hormone Analogs: Synthesis and In Vivo Characteristics of Radiopeptides with High In Vitro Activity

Dimeric analogs of α-melanocyte-stimulating hormone (α-MSH) labeled with radiometals are potential candidates for diagnosis and therapy of melanoma by receptor-mediated tumor targeting. Both melanotic and amelanotic melanomas (over-)express the melanocortin-1 receptor (MC1-R), the target for α-MSH. In the past, dimerized MSH analogs have been shown to display increased receptor affinity compared to monomeric MSH, offering the possibility of improving the ratio between specific uptake of radiolabeled α-MSH by melanoma and nonspecific uptake by the kidneys. We have designed three linear dimeric analogs containing a slightly modified MSH hexapeptide core sequence (Nle-Asp-His-d-Phe-Arg-Trp) in parallel or antiparallel orientation, a short spacer, and the DOTA chelator for incorporation of the radiometal. In vitro, all three peptides were more potent ligands of the mouse B16-F1 melanoma cell melanocortin-1 receptor (MC1-R) than DOTA-NAPamide, which served as standard. The binding activity of DOTA-diHexa(NC-NC)-amide was 1.75-fold higher, that of diHexa(NC-NC)-Gly-Lys(DOTA)-amide was 3.37-fold higher, and that of DOTA-diHexa(CN-NC)-amide was 2.34-fold higher. Using human HBL melanoma cells, the binding activity of diHexa(NC-NC)-Gly-Lys(DOTA)-amide was sixfold higher than that of DOTA-NAPamide. Uptake by cultured B16-F1 cells was rapid and almost quantitative. In vivo, however, the data were less promising: tumor-to-kidney ratios 4 hr postinjection were 0.11 for [¹¹¹In]DOTA-diHexa(NC-NC)-amide, 0.26 for diHexa(NC-NC)-Gly-Lys([¹¹¹In]DOTA)-amide, and 0.36 for [¹¹¹In]DOTA-diHexa(CN-NC)-amide, compared to 1.67 for [¹¹¹In]DOTA-NAPamide. It appears that despite the higher affinity to the MC1-R of the peptide dimers and their excellent internalization in vitro, the uptake by melanoma tumors in vivo was lower, possibly because of reduced tissue penetration. More striking, however, was the marked increase of kidney uptake of the dimers, explaining the unfavorable ratios. In conclusion, although radiolabeled α-MSH dimer peptides display excellent receptor affinity and internalization, they are no alternative to the monomeric DOTA-NAPamide for in vivo application.