ATP(GTP)-dependent conversion of MVM parvovirus single-stranded DNA to its replicative form by a purified 10 S species of mouse DNA polymerase alpha

A species of DNA polymerase alpha that is active in the ATP(GTP)-dependent conversion of MVM parvovirus single-stranded linear DNA to the duplex replicative form has been purified 4300-fold from Ehrlich ascites mouse tumour cells. The single-stranded----replicative form activity is maintained throughout ammonium sulfate precipitation, DEAE-cellulose, phosphocellulose and hydroxyapatite column chromatography and glycerol gradient sedimentation. Polypeptides with Mr = 230 000, 220 000, 183 000, 157 000, 125 000, 70 000, 65 000, 62 000, 57 000, 53 000 and 48 000 copurify with the single-stranded----replicative form activity, which sediments at approx. 10 S. The Mr = 183 000, 157 000 and 125 000 polypeptides exhibit catalytic activity when assayed in situ following SDS-polyacrylamide gel electrophoresis. The 10 S form of DNA polymerase alpha is functionally distinguishable from an 8.4 S form of the enzyme obtained from the same cells on the basis of single-stranded----replicative form activity. The single-stranded----replicative form activity of the 10 S enzyme is stable at 22 degrees C for up to 3 h, but exhibits a half life of only 5 min at 45 degrees C.     

Some observations on variegation inDrosophila

Attempts to modify experimentally the variegated phenotypes of the mutantsz inDrosophila melanogaster andw ^m2 inD. hydei, were largely unsuccessful. Transplanted eyes ofz were found to be more intensely pigmented, but this effect was not influenced by treatment of the imaginal disks or by the host's genotype. Inw ^m2, increased pigmentation was observed after treatment with 5-bromo-uracil.Thew ^m2 phenotype is strongly modified by supernumerary Y chromosomes. One Y shifts the eye colour from yellow to brown, two Y's, to dark red. In the Malpighian tubules, two Y's have a similarly strong effect, but one Y a slight effect only. Malpighian tubules ofw ^m2 larvae were used for a quantitative analysis of mottling. An average clonal cluster size of 1.1 was found. This indicates that the state of pigmentation is determined around the last cell division in the embryo.     

Morphologie comparée de la muqueuse intestinale de deux espèces animales aux possibilités d'absorption protéique néonatale différentes

Summary The morphological features of intestinal epithelium have been studied by light and electron microscopy in two species; in the rat which is able to absorb proteins, such as antibodies and in the rabbit which does not present any transfer upon oral administration of antibodies.The structure of intestinal absorptive cells of the foetus at term and of the newborn from the first day up to the 20th day of life showed a marked evolution. In the foetal cells the apical quarter of the space between the nucleus and the terminal web presents a well developed smooth endoplasmic reticulum. This reticulum is progressively replaced from the first days of life by large numerous vacuoles which diminish in size and number from the 10th day until they disappear on the 20th day. At that time the cells present the adult picture.This evolution as well as other described structural features of the absorptive cells are similar in the two species, despite functional differences in neonatal protein absorption.

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Nous remercions le chef du Centre de Microscopie électronique Monsieur A. Gautier pour ses conseils et ses suggestions intéressantes, Madame M. Probst et Monsieur O. Jenni pour leur aide technique.     

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq

Experimental variance is a major challenge when dealing with high-throughput sequencing data. This variance has several sources: sampling replication, technical replication, variability within biological conditions, and variability between biological conditions. The high per-sample cost of RNA-Seq often precludes the large number of experiments needed to partition observed variance into these categories as per standard ANOVA models. We show that the partitioning of within-condition to between-condition variation cannot reasonably be ignored, whether in single-organism RNA-Seq or in Meta-RNA-Seq experiments, and further find that commonly-used RNA-Seq analysis tools, as described in the literature, do not enforce the constraint that the sum of relative expression levels must be one, and thus report expression levels that are systematically distorted. These two factors lead to misleading inferences if not properly accommodated. As it is usually only the biological between-condition and within-condition differences that are of interest, we developed ALDEx, an ANOVA-like differential expression procedure, to identify genes with greater between- to within-condition differences. We show that the presence of differential expression and the magnitude of these comparative differences can be reasonably estimated with even very small sample sizes.