Protein Rou. A human IgA hybrid

Protein Rou is a human IgA2 myeloma protein that carries the isoallotype marker n A2m(2). Partial amino acid sequence of its H chain (alpha) shows that the hinge region and the CH2 domain are homologous to alpha 2-chain and the CH1 and the CH3 domains homologous to alpha 1. Moreover, the CH1 domain contains the H-L disulfide bond identical to alpha 1. It is concluded that Rou H chain is a hybrid molecule caused by a recombination between alpha 1 and alpha 2 genes. The recombination event occurred between alpha 1-exon 1 and alpha 2-exon hinge and corresponds to position 222-223 of the alpha-chain.     

An excision event that may depend on patchy homology for site specificity.

In mouse cells transformed by a mutant polyomavirus genome, recombination between integrated viral DNA and flanking cellular DNA resulted in the excision of two readily amplifiable chimeras, designated RmI and RmII. The crossing-over that generated RmII was unique in that it involved a simple cellular sequence in which the triplet 5'-CTG-3' was repeated many times. We show that the sequence across the junction resulting from excision was identical in several molecules of RmII, as if the cross-over generating this junction always involved exactly the same two sites on the viral and cellular DNA. We also show that the cellular site mapped where the replacement of a G by an A in one of many successive 5'-CTG-3' triplets generated a homology of five nucleotides (5'-CTACT-3') with the viral site. Oligonucleotides on both sides of these sites are probably involved in matching the two DNAs prior to recombination.     

Phylogeny of Greya (Lepidoptera: Prodoxidae), based on nucleotide sequence variation in mitochondrial cytochrome oxidase I and II: congruence with morphological data

The phylogeny of Greya Busck (Lepidoptera: Prodoxidae) was inferred from nucleotide sequence variation across a 765-bp region in the cytochrome oxidase I and II genes of the mitochondrial genome. Most parsimonious relationships of 25 haplotypes from 16 Greya species and two outgroup genera (Tetragma and Prodoxus) showed substantial congruence with the species relationships indicated by morphological variation. Differences between mitochondrial and morphological trees were found primarily in the positions of two species, G. variabilis and G. pectinifera, and in the branching order of the three major species groups in the genus. Conflicts between the data sets were examined by comparing levels of homoplasy in characters supporting alternative hypotheses. The phylogeny of Greya species suggests that host-plant association at the family level and larval feeding mode are conservative characters. Transition/transversion ratios estimated by reconstruction of nucleotide substitutions on the phylogeny had a range of 2.0-9.3, when different subsets of the phylogeny were used. The decline of this ratio with the increase in maximum sequence divergence among taxa indicates that transitions are masked by transversions along deeper internodes or long branches of the phylogeny. Among transitions, substitutions of A-->G and T-->C outnumbered their reciprocal substitutions by 2-6 times, presumably because of the approximately 4:1 (77%) A+T-bias in nucleotide base composition. Of all transversions, 73%-80% were A<-->T substitutions, 85% of which occurred at third positions of codons; these estimates did not decrease with an increase in maximum sequence divergence of taxa included in the analysis. The high frequency of A<-->T substitutions is either a reflection or an explanation of the 92% A+T bias at third codon positions.      

Diel emergence patterns of drifting chironomid (Diptera) pupal exuviae in the Aude River (Eastern Pyrenees,France)

Two diel emergence patterns (April and October 1990) of chironomids from a hyporhithral site (4th–5th order) in the Aude River are described. In April, 62 species were collected with a mean hourly richness of 31 (±4). The Orthocladiinae (91%) largely dominated the emergence. The total number of exuviae captured by one drift-net varied from 1300 to 11600 per one hour period. There was a clear bimodal pattern with peaks post dawn (07.00–09.00 hrs) and around sunset (18.00 hrs).In October, the total number of exuviae captured was much lower and varied from 150 to 540 per one hour period with post dawn (06.00–08.00 hrs) and post sunset (18.00 hrs) peaks. Nevertheless, the total species richness (65) was higher as was the mean hourly richness (37±4). The Orthocladiinae (68%) dominated less because of increases in the Tanytarsini (15%) and Chiromini (14%). A diel rhythm appeared in autumn emergence. Most of the Orthocladiinae exuviae were collected during daylight hours, whereas most of the Chironomini and Tanytarsini were sampled during darkness. A majority of the exuviae with a length below 3 mm emerged during daylight, but most of the exuviae above 5 mm length emerged during darkness. The exuviae with an intermediate length (3–5 mm) had an amodal diel emergence pattern. In spring and autumn, the majority of species had a bimodal emergence pattern either by day (Orthocladiinae) or by night (Chironominae). But the smallest species had either an unimodal (Thiennemaniella vittata) or bimodal (Neozavrelia fuldensis) daytime emergence. The diel emergence patterns of 10 of the most frequently recorded species are presented.