Phosphorylation of desmin in vitro inhibits formation of intermediate filaments; identification of three kinase A sites in the aminoterminal head domain.

The in vitro phosphorylation of chicken desmin by the catalytic subunit of cAMP-dependent protein kinase was analysed. Phosphorylated desmin loses the ability to form intermediate filaments (IFs). Fragmentation at the sole cysteine and mild chymotryptic treatment show a differential phosphorylation of the three structural domains. Only the amino-terminal head domain is the target of the kinase. Peptide analysis shows that serine 29 is fully phosphorylated, while serine 35 and 50 are phosphorylated at least at 22 and 50% respectively. All three sites show the sequence arginine-X-serine with X being a small residue. These results strengthen the view that the nonhelical head domain has a strong influence on filament integrity most likely via a direct influence of some of its arginine residues. Taken together with previous results (Inagaki et al., 1987) on the phosphorylation of vimentin by kinase A, a new view on IFs emerges. Phosphorylation could allow for regulatory processes in assembly and turnover.     

Amino acid sequence data on glial fibrillary acidic protein (GFA); implications for the subdivision of intermediate filaments into epithelial and non-epithelial members.

Determination of 50% of the sequence of the astrocyte-specific intermediate filament (IF) protein documents the hypervariable regions as well as parts of the coiled-coil array of glial fibrillary acidic protein (GFA). The results show that the four non-epithelial IF proteins (myogenic desmin, mesenchymal vimentin, GFA and neurofilament 68 K protein) known to form homopolymers are much more closely related than the epithelial keratins, which seem to form heteropolymers only. Of the four non-epithelial proteins, desmin and vimentin are the most closely related, since GFA has a shorter non-alpha-helical array at the amino terminus. We discuss the possibility that the non-alpha-helical terminal arrays, because of their sequence and length variability, are responsible for differences of distinct IF with respect to physical-chemical properties such as the low ionic strength-induced depolymerization into protofilaments.     

Activity of phenol oxidases at the puparium formation stage in development of nineteen lozenge mutants of Drosophila melanogaster

Phenol oxidase activity of activated A₁ and A₂ (A₃) electrophoretic components from 19 lozenge mutant and three lozenge double mutant strains was compared to that of wild type flies. Melanin production by the activated A components with tyrosine as substrate was compared to activity in the same acrylamide gels with dopa as substrate. Melanin production decreased, first in the A₁ band and then in the A₂ (A₃) band, with increased morphological expression of the mutant genes. No melanin bands were obtained with either substrate in five of the more severely affected mutants. A possible correlation between phenol oxidase activity and quinone production necessary for normal development of eyes, female accessory sex organs, and claws is discussed.Supported by PHS grant AM-08331-05.     

A Model of the Peripheral Auditory System Responding to Low-Frequency Tones

A model of the peripheral auditory system responding to low-frequency tone stimulation is given. The model is of the type previously introduced by Weiss (1966). It includes three interconnected parts: a linear model of the ear's mechanical system, a model of the cochlear transducer, and a stochastic model of an auditory nerve fiber. The output of the model accurately mimics many characteristics of the output of some auditory nerve neurons responding to sinusoidal stimuli but is unable to successfully match all reported aspects of data obtained from other of these neurons. Characteristics of the model neurons are discussed.     

Interactive Effects of CO(2) and O(2) in Soil on Root and Top Growth of Barley and Peas

Barley and pea plants were grown under several regimens of different compositions of soil atmosphere, the O₂ concentration varying from 0 to 21% and the CO₂ concentration from 0 to 8%. In absence of CO₂, the effect of O₂ on root length in barley was characterized by equal root lengths within the range of 21 to 7% O₂ and a steep decline between 7 and 0%. In peas, while showing the same general response, the decline occurred between 14 and 7% O₂. Root numbers of the seminal roots of barley decreased already with reduction in O₂ concentration from 21 to 14%. Dry matter production was affected somewhat differently by O₂ and CO₂ concentration. Dry matter production in barley was reduced at 14% O₂ while root length decreased between 7 and 0%. In peas, dry matter production was favored by low CO₂ concentrations except where there was no oxygen. At 21% O₂, increasing CO₂ concentrations did not seem to affect root length up to concentrations of 2% CO₂. At 8% CO₂, root length was decreased. The inter-active effects of CO₂ and O₂ are characterized by a reduced susceptibility to CO₂ at O₂ values below 7%, and a very deleterious effect of 8% CO₂ at 7% O₂.     

Assembly, intracellular processing, and expression at the cell surface of the human alpha beta T cell receptor/CD3 complex. Function of the CD3-zeta chain

The TCR/CD3 complex is a multimeric protein complex composed of a minimum of seven transmembrane chains (TCR alpha beta-CD3 gamma delta epsilon zeta 2). Whereas earlier studies have demonstrated that both the TCR-alpha and -beta chains are required for the cell surface expression of the TCR/CD3 complex, the role of the CD3 chains for the TCR/CD3 expression have not been experimentally addressed in human T cells. In this study the function of the CD3-zeta chain for the assembly, intracellular processing, and expression of the TCR/CD3 complex in the human leukemic T cell line Jurkat was investigated. The results indicate that: 1) CD3-zeta is required for the cell surface expression of the TCR/CD3 complex; 2) the pentameric form (TCR alpha beta-CD3 gamma delta epsilon) of the TCR/CD3 complex and single TCR chains associated with CD3 (TCR alpha-CD3 gamma delta epsilon and TCR beta-CD3 gamma delta epsilon) are produced in the endoplasmic reticulum in the absence of CD3-zeta; 3) the CD3-zeta does not associate with TCR alpha-CD3 gamma delta epsilon or TCR beta-CD3 gamma delta epsilon complexes; 4) CD3-zeta associate with the pentameric form of the TCR/CD3 complex in the endoplasmic reticulum to form the heptameric complex (TCR alpha beta-CD3 gamma delta epsilon----TCR alpha beta-CD3 gamma delta epsilon 2); and 5) CD3-zeta is required for the export of the TCR/CD3 complex from the endoplasmic reticulum to the Golgi apparatus for subsequent processing.     

Detecting non-neutral heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence

Natural selection, in the form of balancing selection or selective sweeps, can result in a decoupling of the amounts of molecular polymorphism and divergence. Thus natural selection can cause some areas of DNA sequence to have greater silent polymorphism, relative to divergence between species, than other areas. It would be useful to have a statistical test for heterogeneity in the polymorphism to divergence ratio across a region of DNA sequence, one that could identify heterogeneity greater than that expected from the neutral processes of mutation, drift, and recombination. The only currently available test requires that a region be arbitrarily divided into sections that are compared with each other, and the subjectivity of this division could be problematic. Here a test is proposed in which runs of polymorphic and fixed sites are counted, where a "run" is a set of one or more sites of one type preceded and followed by the other type. The number of runs is smaller than otherwise expected if polymorphisms are clumped together. By simulating neutral evolution and comparing the observed number of runs to the simulations, a statistical test is possible which does not require any a priori decisions about subdivision.