Improved Coated Vesicle Isolation Allows Better Characterization of Clathrin Polypeptides

Postmicrosomal pellets from plant sources are grossly contaminatedwith nbosomes. Previous purifications of clathrin coated vesicles(CCV) from such subcellular fractions have therefore often involvedan RNase treatment. Performed at 30°C, this step inherentlycarries with it the dangers of proteolysis. We document herea method for CCV isolation which avoids this. Through the inclusionof suitable antiproteases in the homogenizing and subsequentisolation media, we have also been able to improve the qualityof CCV recovered from plant tissues. As a result we have tentativelybeen able to identify clathrin light chains from zucchini hypocotyland pea cotyledon CCV. Similar to light chains from bovine brainthese polypeptides are heat stable, can be solubilized fromneutralized TCA precipitates, bind calcium and clathrin heavychains. However, in contrast to brain CCV the two light chainsof plant CCV are some 10 kDa heavier. Key words: Antiproteases, Ca²⁺-binding, clathrin coated vesicles, clathrin heavy chains, clathrin light chain(s), heat stability, pea cotyledons, RNase, zucchini hypocotyls     

The effects of ecology on life history strategies and metabolic disturbances during development: an example from the African bovids

Life history theory predicts environmental factors to affect changes in life history strategies. However, owing to the interrelationships between body mass and life history variables, it is difficult to discern causal relationships, especially in large-bodied mammals and using a comparative approach. The situation is exacerbated in palaeobiologi-cal studies, where many of the variables cannot be observed directly. Specifically, mortality risk has been identified as one of the most important factors determining life history strategies, but its assessment is difficult. This hampers analyses of life history evolution. This study thus explored the possibility to extract previously untapped information from hard tissue, i.e. teeth, which may be useful for life history reconstruction. Histological sections of 25 molars of bovids, representing all subfamilies and spanning a wide range of body masses, were analysed with regard to: (i) molar crown formation times in relation to female body mass and gestation length, and (ii) metabolic disturbances from early to late forming teeth in relation to habitat type occupied, diet consumed and habitual walking style employed. It was found that molar crown formation times in bovids are highly correlated with gestation length once the effects of body mass have been removed. This differs from primates and indicates similarities in pre- and postnatal growth rates in these mammals. Closed-habitat species exhibit relatively fewer disturbances during development than open-country species, but the reverse holds for adult specimens. This accords with what is known about the ecological and behavioural adaptations of the species and is predicted by life history theory. It could thus be confirmed that teeth may provide vital information about life history variables. Exploitation of this information will allow hypotheses to be tested regarding the evolutionary changes in life history strategies of extinct species.     

The species–area relationship in centipedes (Myriapoda: Chilopoda): a comparison between Mediterranean island groups

The present study article examines the shapes of centipede species–area relationships (SARs) in the Mediterranean islands, compares the results of the linear form of the power model between archipelagos, discusses biological significance of the power model parameters with other taxa on the Aegean archipelago, and tests for a significant small‐island effect (SIE). We used 11 models to test the SARs and we compared the quality‐of‐fit of all candidate models. The power function ranked first and Z‐values was in the range 0.106–0.334. We assessed the presence of SIEs by fitting both a continuous and discontinuous breakpoint regression model. The continuous breakpoint regression functions never performed much better than the closest discontinuous model as a predictor of centipede species richness. We suggest that the relatively low Z‐values in our data partly reflect better dispersal abilities in centipedes than in other soil invertebrate taxa. Longer periods of isolation and more recent island formation may explain the somewhat lower constant c in the western Mediterranean islands compared to the Aegean islands. Higher breakpoint values in the western Mediterranean may also be a result of larger distance to the mainland and longer separation times. Despite the differences in the geological history and the idiosyncratic features of the main island groups considered, the overall results are quite similar and this could be assigned to the ability of centipedes to disperse across isolation barriers. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 146–159.     

Trade‐offs in primate grooming reciprocation: testing behavioural flexibility and correlated evolution

Primates may trade altruistic behaviours, such as grooming, either for itself or for different rank‐related benefits, such as tolerance or agonistic support. Ecological conditions are expected to affect competition and thus the steepness of dominance hierarchies. This, in turn, may influence the value of the different currencies that primates exchange. Thus, it can be hypothesized that, as the dominance hierarchy becomes steeper, more grooming is directed up the hierarchy (in exchange for tolerance or agonistic support) and less grooming is exchanged for other grooming. We assembled a large database of within‐group grooming distribution in primates (38 social groups belonging to 16 species and eight genera) and tested these hypotheses both within species (i.e. comparing different groups of the same species) and between species (using comparative methods that control for phylogenetic relatedness). We found within‐species evidence that steeper dominance hierarchies were associated with more grooming being directed up the hierarchy, and that a trade‐off occurred between the tendency to groom up the hierarchy and the degree of grooming reciprocation (although, in some analyses, only a nonsignificant trend was observed). By contrast, phylogenetically controlled comparisons between species did not reveal evidence of correlated evolution between the steepness of the dominance hierarchy, the tendency to direct grooming up the hierarchy, and the degree of grooming reciprocation. © 2008 The Linnean Society of London, Biological Journal of the Linnean Society, 2008, 95 , 439–446.     

Characterization of EST derived SSRs from the bay scallop,Argopecten irradians

Interest in bay scallop conservation has resulted in organized stock enhancement efforts and increased attention to fisheries management issues. Genetic markers can facilitate the monitoring of enhancement efforts, characterization of wild populations, and optimize hatchery practices. We have identified eight polymorphic simple sequence repeat markers including one dinucleotide, six trinucleotide and one compound dinucleotide repeats, in expressed sequence tags generated from multiple bay scallop cDNA libraries. The numbers of alleles range from two to five. The expected and observed heterozygosities range from 0.093 to 0.720 and 0.095 to 0.600, respectively.     

Calculations of population differentiation based on GST and D: forget GST but not all of statistics!

G _ST‐values and its relatives (F_ST) belong to the most used parameters to define genetic differences between populations. Originally, they were developed for allozymes with very low number of alleles. Using highly polymorphic microsatellite markers it was often puzzling that G_ST‐values were very low but statistically significant. In their papers, Jost (2008) and Hedrick (2005) explained that G_ST‐values do not show genetic differentiation, and Jost suggested calculating D‐values instead. Theoretical mathematical considerations are often difficult to follow; therefore, we chose an applied approach comparing two artificial populations with different number of alleles at equal frequencies and known genetic divergence. Our results show that even for more than one allele per population G_ST‐values do not calculate population differentiation correctly; in contrast, D‐values do reflect the genetic differentiation indicating that data based on G_ST‐values need to be re‐evaluated. In our approach, statistical evaluations remained similar. We provide information about the impact of different sample sizes on D‐values in relation to number of alleles and genetic divergence.     

The Effect of High Concentrations of Heavy Water on Root Morphogenesis in Zea mays

The effect of high concentrations of heavy water on young rootsof Zea mays was investigated. Submersion for 24 hrs. in solutionsof 80–90 per cent. D₂O will temporarily stop growth ofthe primary root. During the treatment period the root-tip regionswill swell as the result of radial cell enlargement, primarilyin the cortical region. Upon removal from D₂O growth will resume,initially at a slower rate than controls but ultimately at similarmaximum rates. Lateral root production is inhibited in thatportion of the primary root which is the region of elongationat time of treatment. However, in the swollen region lateralroot formation is accentuated. The mitotic index drops sharplyupon introduction of the primary roots into 80 per cent. D₂O.Within 12 hrs. the index drops to zero and remains at this leveluntil the roots are removed from the heavy water. The mitoticindex then rises again, reaching control values within 24 hrs.It is suggested that the gentle, temporary inhibitory actionof D₂O makes this substance a useful tool in morphogenetic investigations.     

Characterization of SSRs from the American lobster,Homarus americanus

The American lobster (Homarus americanus), a commercially important benthic marine crustacean, is widely distributed along the continental shelf of the western North Atlantic. The population substructure of this species remains poorly understood despite its economic value. Informative markers are required to clarify relationships between local populations. To this end, we developed eight polymorphic short sequence repeats (SSR) for the American lobster, which were derived from expressed sequence tags. Additionally, we tested four SSRs previously identified for the Norway lobster (Nephrops norvegicus L.) for cross‐species utility; only one of these showed polymorphism.     

Offspring size and survival in the frog Rana latastei: from among-population to within-clutch variation

Egg size is considered to be a major maternal effect for offspring in oviparous organisms. It has profound consequences on fitness, and differences in egg size are viewed as plastic responses to environmental variability. However, it is difficult to identify the effect of egg size per se because egg size can covary with genetic features of the mother and with other nongenetic factors. We analysed the relationship between offspring starting size (i.e. a proxy of egg size) and larval survival in the frog Rana latastei . We analysed this relationship: (1) among five populations at different altitudes; (2) among clutches laid from different females; and (3) among siblings within clutches, to evaluate the effect of starting size. We observed differences among populations for offspring size, but starting size was not related to altitude or genetic diversity. Mortality was higher in populations and families with small average starting size; however, among siblings, the relationship between starting size and mortality was not verified. The relationship observed among clutches may therefore be caused by covariation between egg size and other effects. This suggests that the covariation between egg size and other effects can result in apparent relationships between egg size and fitness-related traits. Proximate and ultimate factors can cause the phenotypic variation of hatchlings in the wild, and key traits can be related to this variation, but the underlying causes require further investigation.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 845–853.     

Local disturbance history and habitat parameters influence the microdistribution of stream invertebrates

1. We investigated the effects of local disturbance history and habitat parameters (abiotic and biotic) on the microdistribution of benthic invertebrates during several floods in two streams, the Schmiedlaine in Germany (four events) and the Kye Burn in New Zealand (two events). 2. Bed movement patterns were quantified using metal‐link scour chains. Before and after each flood, quantitative invertebrate samples were taken from replicate bed patches that had experienced sediment scour, fill or remained stable. 3. Patterns of invertebrate density in the different bed stability types (i.e. scour, fill, stable) varied between floods, sampling dates and streams, but invertebrate density was highest in stable patches in >50% of all the patch type effects detected and lowest in fill patches in 75% of all detected effects. Stable bed patches acted as a refugium for Liponeura spp. and Leuctra spp. in the Schmiedlaine and for Hydracarina and Deleatidium spp. in the Kye Burn. 4. Averaged across both streams, only near‐bed current velocity was correlated with invertebrate distribution on the streambed more often than disturbance history. In the Kye Burn, disturbance history and water depth were the most influential habitat parameters. 5. Our results suggest that a thorough understanding of the microdistribution of benthic invertebrates requires knowledge of disturbance history, as well as more readily measured habitat parameters such as current velocity or water depth.