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2.
Sampling properties of DNA sequence data in phylogenetic analysis 总被引:26,自引:6,他引:20
We inferred phylogenetic trees from individual genes and random samples of
nucleotides from the mitochondrial genomes of 10 vertebrates and compared
the results to those obtained by analyzing the whole genomes. Individual
genes are poor samples in that they infrequently lead to the whole-genome
tree. A large number of nucleotide sites is needed to exactly determine the
whole-genome tree. A relatively small number of sites, however, often
results in a tree close to the whole-genome tree. We found that blocks of
contiguous sites were less likely to lead to the whole-genome tree than
samples composed of sites drawn individually from throughout the genome.
Samples of contiguous sites are not representative of the entire genome, a
condition that violates a basic assumption of the bootstrap method as it is
applied in phylogenetic studies.
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BACKGROUND: Morbidity management is a core component of the global programme for the elimination of lymphatic filariasis. In a double-blind clinical trial, the tolerability and efficacy of Daflon (500 mg) + DEC (25 mg) or DEC (25 mg) alone, twice daily for 90 days, was studied in 26 patients with bancroftian filarial lymphoedema. RESULTS: None of the patients in either drug group reported any adverse reaction throughout the treatment period (90 days). Haematological and biochemical parameters were within normal limits and there was no significant difference between the pre-treatment (day 0) and post-treatment (day 90) values. The group receiving Daflon showed significant reduction in oedema volume from day 90 (140.6 PlusMinus; 18.8 ml) to day 360 (71.8 PlusMinus; 20.7 ml) compared to the pre-treatment (day 0, 198.4 PlusMinus; 16.5 ml) value. This accounted for a 63.8% reduction in oedema volume by day 360 (considering the pre-treatment (day 0) as 100%). In the DEC group, the changes in oedema volume (between day 1 and day 360) were not significant when compared to the pre-treatment (day 0) value. The percentage reduction at day 360 was only 9%, which was not significant (P > 0.05). CONCLUSION: This study has shown that Daflon (500 mg, twice a day for 90 days) is both safe and efficacious in reducing oedema volume in bancroftian filarial lymphoedema. Further clinical trials are essential for strengthening the evidence base on the role of this drug in the morbidity management of lymphatic filariasis. 相似文献
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The Kosi coastal lake system, a chain of four interconnected basins, is located in the subtropical north-eastern corner of South Africa. Little information is available on zooplankton of the system and the main aim of this study is to report on zooplankton samples collected during 2002 and 2003. The set of samples consists of seasonal, subsurface mesozooplankton samples that were collected during nighttime in each of the lakes. A well-developed salinity gradient was evident along the interconnected lakes in the subsurface water during all seasons, ranging from freshwater in the upper lake Amanzamnyama to a maximum of 22 recorded in Lake Makhawulani. The zooplankton community structures of the lakes reflected the salinity gradient of the system, with some coastal marine taxa recorded in the lakes closer to the mouth and only freshwater taxa recorded in Lake Amanzamnyama. Mesozooplankton diversity and abundance were relatively low compared to other estuarine systems along the eastern coast of South Africa. The dominant taxa were calanoid copepods Acartiella natalensis and Pseudodiaptomus stuhlmanni and the mysid Mesopodopsis africana in the lower lakes, whereas cyclopoids Mesocyclops sp. and Thermocyclops sp. dominated the freshwater lake Amanzamnyama. 相似文献
8.
Measurement of net ecosystem production and ecosystem respiration in a Zoysia japonica grassland,central Japan,by the chamber method 总被引:1,自引:0,他引:1
Dhital Deepa Muraoka Hiroyuki Yashiro Yuichiro Shizu Yoko Koizumi Hiroshi 《Ecological Research》2010,25(2):483-493
Measuring light, temperature, soil moisture, and growth provides a better understanding of net ecosystem production (NEP),
ecosystem respiration (R
eco), and their response functions. Here, we studied the variations in NEP and R
eco in a grassland dominated by a perennial warm-season C4 grass, Zoysia japonica. We used the chamber method to measure NEP and R
eco from August to September 2007. Biomass and leaf area index (LAI) were also measured to observe their effects on NEP and R
eco. Diurnal variations in NEP and R
eco were predicted well by light intensity (PPFD) and by soil temperature, respectively. Maximum NEP (NEPmax) values on days of year 221, 233, 247, and 262, were 2.44, 2.55, 3.90, and 4.17 μmol m−2 s−1, respectively. Throughout the growing period, the apparent quantum yield (α) increased with increasing NEPmax that ranged from 0.0154 to 0.0515, and NEP responded to the soil temperature changes by 44% and R
eco changes by 48%, and R
eco responded from 88 to 94% with the soil temperature diurnally. NEP’s light response and R
eco’s temperature response were affected by soil water content; more than 27% of the variation in NEP and 67% of the variation
in R
eco could be explained by this parameter. NEP was strongly correlated with biomass and LAI, but R
eco was not, because environmental variables affected R
eco more strongly than growth parameters. Using the light response of NEP, the temperature response of R
eco, and meteorological data, daily NEP and R
eco were estimated at 0.67, 0.81, 1.17, and 1.56 g C m−2, and at 2.88, 2.50, 3.51, and 3.04 g C m−2, respectively, on days of year 221, 233, 247, and 262. The corresponding daily gross primary production (NEP + R
eco) was 3.5, 3.3, 4.6, and 4.6 g C m−2. 相似文献
9.
Deepa Dhital Yuichiro Yashiro Toshiyuki Ohtsuka Hibiki Noda Yoko Shizu Hiroshi Koizumi 《Journal of plant research》2010,123(4):519-530
The ecosystem carbon budget was estimated in a Japanese Zoysia japonica grassland. The green biomass started to grow in May and peaked from mid-July to September. Seasonal variations in soil CO2 flux and root respiration were mediated by changes in soil temperature. Annual soil CO2 flux was 1,121.4 and 1,213.6 g C m−2 and root respiration was 471.0 and 544.3 g C m−2 in 2007 and 2008, respectively. The root respiration contribution to soil CO2 flux ranged from 33% to 71%. During the growing season, net primary production (NPP) was 747.5 and 770.1 g C m−2 in 2007 and 2008, respectively. The biomass removed by livestock grazing (GL) was 122.1 and 102.7 g C m−2, and the livestock returned 28.2 and 25.6 g C m−2 as fecal input (FI) in 2007 and 2008, respectively. The decomposition of FI (DL, the dry weight loss due to decomposition)
was very low, 1.5 and 1.4 g C m−2, in 2007 and 2008. Based on the values of annual NPP, soil CO2 flux, root respiration, GL, FI, and DL, the estimated carbon budget of the grassland was 1.7 and 22.3 g C m−2 in 2007 and 2008, respectively. Thus, the carbon budget of this Z. japonica grassland ecosystem remained in equilibrium with the atmosphere under current grazing conditions over the 2 years of the
study. 相似文献
10.
Type IX collagen is a key component of the extracellular matrix of
cartilage where it occurs at the surfaces of type II collagen fibrils as a
glycanated molecule. The function of the glycosaminoglycan (GAG) side chain
of the molecule is, however, unknown. We have shown that type IX collagen
in chicken sternal cartilage is synthesized with a unimodal distribution of
GAG chain size, but at post 17 days of development three predominant
glycanforms of type IX collagen accumulate. Such accumulation did not occur
in sterna from day 15 embryos. In day 17 embryos predominant glycanforms
were found in the caudal region of the sternum. By day 19 of development
the three predominant glycanforms are widespread throughout the caudal and
cephalic regions. The results indicate that developmental and anatomical
changes occur to type IX collagen that depend on the size of the GAG chain
attached to the alpha2(IX) chain of the molecule.
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