Noninvasive Estimation of Black Bear Abundance Incorporating Genotyping Errors and Harvested Bear

ABSTRACT Estimating black bear (Ursus americanus) population size is a difficult but important requirement when justifying harvest quotas and managing populations. Advancements in genetic techniques provide a means to identify individual bears using DNA contained in tissue and hair samples, thereby permitting estimates of population abundance based on established mark-capture-recapture methodology. We expand on previous noninvasive population-estimation work by geographically extending sampling areas (36,848 km²) to include the entire Northern Lower Peninsula (NLP) of Michigan, USA. We selected sampling locations randomly within biologically relevant bear habitat and used barbed wire hair snares to collect hair samples. Unlike previous noninvasive studies, we used tissue samples from harvested bears as an additional sampling occasion to increase recapture probabilities. We developed subsampling protocols to account for both spatial and temporal variance in sample distribution and variation in sample quality using recently published quality control protocols using 5 microsatellite loci. We quantified genotyping errors using samples from harvested bears and estimated abundance using statistical models that accounted for genotyping error. We estimated the population of yearling and adult black bears in the NLP to be 1,882 bears (95% CI = 1,389-2,551 bears). The derived population estimate with a 15% coefficient of variation was used by wildlife managers to examine the sustainability of harvest over a large geographic area.     

Noninvasive Hair Sampling and Genetic Tagging of Co-Distributed Fishers and American Martens

ABSTRACT Estimation of abundance is important for assessing population responses to management actions. Accurate abundance estimates are particularly critical for monitoring temporal variation following reintroductions when the management goal is to attain population sizes capable of sustaining harvest. Numerous reintroductions have taken place in the Great Lakes region of North America, including efforts to restore extirpated fishers (Martes pennanti) and American martens (M. americana). We used a DNA-based noninvasive hair-snaring method based on one trap design and trapping -grid configuration, and evaluated capture—mark—recapture (CMR) analytical approaches to simultaneously estimate population size for co-distributed fishers and American martens in a 671-km² area of the Ottawa National Forest in the western Upper Peninsula of Michigan, USA. We included harvest as a final recapture period to increase probability of recapture and to evaluate potential violations of geographic closure assumptions. We used microsatellite markers to identify target species, eliminate congener species, and provide individual identity for estimation of abundance. Population estimates for fishers and martens on the study area ranged from 35 to 60 and 8 to 28, respectively. Estimators incorporating harvest data resulted in up to a 40% increase in abundance estimates relative to estimators without harvest. We considered population estimates not including harvest data the most appropriate for the study due to timing of sampling and environmental factors, but inclusion of harvested individuals was shown to be useful as a means to detect violations of the assumption of geographic closure. We suggest improvements on future CMR sampling designs for larger landscape scales of relevance to management through incorporation of habitat or historical harvest data. Noninvasive genetic methods that simultaneously estimate the numerical abundance of co-distributed species can greatly decrease assessment costs relative to traditional methods, and increase resulting demographic and ecological information.     

Relationships of marsh seed banks to vegetation patterns along environmental gradients

• 1 The relationship of the seed bank to the vegetation of a freshwater marsh was studied along gradients of water depth and soil organic matter content. Characters examined included standing crop, seedling density, and species composition, distribution and richness.
• 2 The seed bank differed from the vegetation in that only nine of twenty-seven species were present in both, abundant seed-bank species were uncommon as adults, and adults showed different distributions along a gradient of soil organic matter content whereas their seeds were most abundant in soils with high organic matter.
• 3 The seed bank resembled the vegetation in that separate multivariate analyses of the communities revealed that variation in the species composition of each was significantly correlated with water depth and soil organic matter content. Further, species richness in both communities decreased with water depth and increased with soil organic matter content. Lastly, the standing crop of the vegetation and the number of seedlings both decreased with water depth and increased with soil organic matter.
• 4 Consideration of spatial patterns and environmental gradients revealed more similarities between vegetation and seed banks than were obtained by comparing species lists. The results suggest that artificial stimulation of seed bank germination for management purposes will not produce vegetation changes as large as those suggested by differences in species lists.

     

Managing precipitation use in sustainable dryland agroecosystems

In the Great Plains of North America potential evaporation exceeds precipitation during most months of the year. About 75% of the annual precipitation is received from April through September, and is accompanied by high temperatures and low relative humidity. Dryland agriculture in the Great Plains has depended on wheat production in a wheat-fallow agroecosystem (one crop year followed by a fallow year). Historically this system has used mechanical weed control practices during the fallow period, which leaves essentially no crop residue cover for protection against soil erosion and greatly accelerates soil organic carbon oxidation. This paper reviews the progress made in precipitation management in the North American Great Plains and synthesises data from an existing long-term experiment to demonstrate the management principles involved. The long-term experiment was established in 1985 to identify dryland crop and soil management systems that would maximize precipitation use efficiency (maximization of biomass production per unit of precipitation received), improve soil productivity, and increase economic return to the farmers in the West Central portion of the Great Plains. Embedded within the primary objective are sub-objectives that focus on reducing the amount of summer fallow time and reversing the soil degradation that has occurred in the wheat-fallow cropping system. The experiment consists of four variables: 1) Climate regime; 2) Soils; 3) Management systems; and 4) Time. The climate variable is based on three levels of potential evapotranspiration (ET), which are represented by three sites in eastern Colorado. All sites have annual long-term precipitation averages of approximately 400–450 mm, but vary in growing season open pan evaporation from 1600 mm in the north to 1975 mm in the south. The soil variable is represented by a catenary sequence of soils at each site. Management systems, the third variable, differ in the amount of summer fallow time and emphasize increased crop diversity. All systems are managed with no-till techniques. The fourth variable is time, and the results presented in this paper are for the first 12 yr (3 cycles of the 4-yr system). Comparing yields of cropping systems that differ in cycle length and systems that contain fallow periods, when no crop is produced, is done with a technique called “annualisation”. Yields are “annualised” by summing yields for all crops in the system and dividing by the total number of years in the system cycle. For example in a wheat-fallow system the wheat yield is divided by two because it takes 2 yr to produce one crop. Cropping system intensification increased annualised grain and crop residue yields by 75 to 100% compared to wheat-fallow. Net return to farmers increased by 25% to 45% compared to wheat-fallow. Intensified cropping systems increased soil organic C content by 875 and 1400 kg ha⁻¹, respectively, after 12 yr compared to the wheat-fallow system. All cropping system effects were independent of climate and soil gradients, meaning that the potential for C sequestration exists in all combinations of climates and soils. Soil C gains were directly correlated to the amount of crop residue C returned to the soil. Improved macroaggregation was also associated with increases in the C content of the aggregates. Soil bulk density was reduced by 0.01g cm⁻³ for each 1000 kg ha⁻¹ of residue addition over the 12-yr period, and each 1000 kg ha⁻¹ of residue addition increased effective porosity by 0.3%. No-till practices have made it possible to increase cropping intensification beyond the traditional wheat-fallow system and in turn water-use efficiency has increased by 30% in West Central Great Plains agroecosystems. Cropping intensification has also provided positive feedbacks to soil productivity via the increased amounts of crop residue being returned to the soil.     

The influence of macro‐litterfall and forest structure on litterfall damage to seedlings

Abstract Microdisturbance to seedlings is important because it can differentially affect the mortality and recruitment of seedlings of forest tree species and thereby ultimately affect community composition. Microdisturbance due to litterfall has been shown to vary greatly in its influence on seedling survival among and within forests, and yet there have been no previous studies that investigate the cause of these differences. In this study the influence of macro‐litterfall on seedling damage is investigated in five complex temperate forests in New Zealand. Litterfall damage to artificial seedlings in these forests was strongly correlated with macro‐leaf‐fall (leaves > 30 cm × 1.5 cm) dry weight and total macro‐litterfall (leaves and deadwood > 30 cm × 1.5 cm) surface area (R² = 0.99, P < 0.005 for each). Protective vegetation within 2 m of the ground (mostly lianes and woody shrubs) reduced the risk of litterfall damage by up to 84%. Hitherto unexplained differences in litterfall damage to seedlings found among, and within, forests (tropical and temperate) may therefore be due to differences in rates of macro‐leaf‐fall and forest structure. These results are important because they suggest that subtle differences in forest structure, and species composition, may influence regeneration patterns through the litterfall microdisturbance regime.     

Landscape Correlates Along Mourning Dove Call-Count Routes in Mississippi

ABSTRACT Mourning dove (Zenaida macroura) call-count surveys in Mississippi, USA, suggest declining populations. We used available mourning dove call-count data to evaluate long-term mourning dove habitat relationships. Dove routes were located in the Mississippi Alluvial Valley, Deep Loess Province, Mid Coastal Plain, and Hilly Coastal Plain physiographic provinces of Mississippi. We also included routes in the Blackbelt Prairie region of Mississippi and Alabama, USA. We characterized landscape structure and composition within 1.64-km buffers around 10 selected mourning dove call-count routes during 3 time periods. Habitat classes included agriculture, forest, urban, regeneration stands, wetland, and woodlot. We used Akaike's Information Criterion to select the best candidate model. We selected a model containing percent agriculture and edge density that contained approximately 40% of the total variability in the data set. Percent agriculture was positively correlated with relative dove abundance. Interestingly, we found a negative relationship between edge density and dove abundance. Researchers should conduct future research on dove nesting patterns in Mississippi and threshold levels of edge necessary to maximize dove density. During the last 20 years, Mississippi lost more than 800,000 ha of cropland while forest cover represented largely by pine (Pinus taeda) plantations increased by more than 364,000 ha. Our results suggest observed localized declines in mourning dove abundance in Mississippi may be related to the documented conversion of agricultural lands to pine plantations.     

Influence of Exogenous Fatty Acids on Cottonseed Germination

Effects of exogenous free fatty acid application on percentage germination and radicle length were investigated with more chill sensitive (Pima S-4) and less chill sensitive (Pima S-5) cottonseed (Gossypium barbadense L.) at chilling (14°C) and optimal (34°C) temperatures. Of the organic solvents able to solubilize free fatty acids, aqueous solutions as high as 5% dimethyl sulfoxide did not adversely affect germination at 34°C. Palmitic, oleic and linoleic acids (120 μM) were solubilized in 5% DMSO. At 14°C, percent germination of fatty acid treated Pima S-5 significantly increased, while no difference was observed for Pima S-4. Conversely, radicle length of fatty acid treated Pima S-4 significantly increased especially with oleate and linoleate, while no difference was detected for Pima S-5. Fatty acid supplementation influenced neither germination nor radicle length for Pima S-4 and Pima S-5 at 34°C.     

Expression and regulation of Sclerotinia sclerotiorum necrosis and ethylene-inducing peptides (NEPs)

Successful host colonization by necrotrophic plant pathogens requires the induction of plant cell death to provide the nutrients needed for infection establishment and progression. We have cloned two genes encoding necrosis and ethylene-inducing peptides from Sclerotinia sclerotiorum , which we named SsNep1 and SsNep2 . The peptides encoded by these genes induce necrosis when expressed transiently in tobacco leaves. SsNep1 is expressed at a very low level relative to SsNep2 during infection. The expression of SsNep2 was induced by contact with solid surfaces and occurred in both the necrotic zone and at the leading margin of the infection. SsNep2 expression was dependent on calcium and cyclic adenosine monophosphate signalling, as compounds affecting these pathways reduced or abolished SsNep2 expression coincident with a partial or total loss of virulence.