Taphonomy and palaeoecology of Hauterivian–Barremian nerineoid shell beds from the Neuquén Basin,west‐central Argentina

Nerineoid shell beds are described for the first time from Lower Cretaceous deposits of southern South America. These come from carbonates near the top of the Agrio Formation in southern Mendoza Province, west‐central Argentina. To envisage the origin of the nerineoid shell beds, a taphonomic study was carried out, which indicated that these represent within‐habitat time‐averaged, primary sedimentological concentrations with a secondary biogenic imprint related to a relatively high local production of nerineoid shells. The associated palaeoenvironments were studied through a facies analysis of the carbonate succession including the shell beds. The carbonates were deposited in a homoclinal ramp system and depict a shallowing upward trend from mid to inner ramp. The individuals lived and accumulated in oolitic shoals within the inner ramp, in a shallow, well‐lit, high‐energy setting above fair‐weather wave base. Substrate was oxygenated and loose. The nerineoids are shown to belong to one species of the genus Eunerinea, and through the functional morphology of the shells they are tentatively interpreted as infaunal or semi‐infaunal. It is suggested that the recorded monospecific nerineoid shell beds indicate that the palaeoenvironmental conditions may have been favourable for the development of abundant populations of these gastropods in the northern part of the Neuquén Basin during a short time interval in the Hauterivian–Barremian boundary. This could have been related to a brief warming episode, but other factors may have also been involved. □Argentina, Early Cretaceous, Gastropods, nerineoids, Neuquén Basin, shell beds, taphonomy.     

Semiempirical modeling of abiotic and biotic factors controlling ecosystem respiration across eddy covariance sites

In this study we examined ecosystem respiration (R_ECO) data from 104 sites belonging to FLUXNET, the global network of eddy covariance flux measurements. The goal was to identify the main factors involved in the variability of R_ECO: temporally and between sites as affected by climate, vegetation structure and plant functional type (PFT) (evergreen needleleaf, grasslands, etc.). We demonstrated that a model using only climate drivers as predictors of R_ECO failed to describe part of the temporal variability in the data and that the dependency on gross primary production (GPP) needed to be included as an additional driver of R_ECO. The maximum seasonal leaf area index (LAI_MAX) had an additional effect that explained the spatial variability of reference respiration (the respiration at reference temperature T_ref=15 °C, without stimulation introduced by photosynthetic activity and without water limitations), with a statistically significant linear relationship (r²=0.52, P<0.001, n=104) even within each PFT. Besides LAI_MAX, we found that reference respiration may be explained partially by total soil carbon content (SoilC). For undisturbed temperate and boreal forests a negative control of total nitrogen deposition (N_depo) on reference respiration was also identified. We developed a new semiempirical model incorporating abiotic factors (climate), recent productivity (daily GPP), general site productivity and canopy structure (LAI_MAX) which performed well in predicting the spatio‐temporal variability of R_ECO, explaining >70% of the variance for most vegetation types. Exceptions include tropical and Mediterranean broadleaf forests and deciduous broadleaf forests. Part of the variability in respiration that could not be described by our model may be attributed to a series of factors, including phenology in deciduous broadleaf forests and management practices in grasslands and croplands.     

Influences of area, isolation and habitat features on distribution of snakes in Mediterranean fragmented woodlands

The effects of isolation-related and vegetational parameters on presence and relative abundance of snakes in patchy forested fragments of Mediterranean central Italy are studied. The most abundant species was Coluber viridiflavus (accounting for 47.7% of the total snake sample observed) followed by Vipera aspis (22%), Elaphe longissima (21.5%), Natrix natrix (7.7%), and Coronella austriaca (1.1%). There was a clear trend for bigger species to be less distributed among the various forest fragments than the smaller species. Presence of Coluber viridiflavus, Coronella austriaca and Natrix natrix was not influenced by woodland area, whereas that of Vipera aspis and Elaphe longissima was positively influenced by woodland area. Woodland isolation parameters did not influence the presence of Coluber viridiflavus, Coronella austriaca and Natrix natrix, but of Vipera aspis and Elaphe longissima. Discriminant stepwise analysis suggested that specific environmental features influenced the occurrence and abundance of the various snake species, Vipera aspis being the taxon more affected by isolation-related parameters. Some conservation implications of our observations are also discussed.     

Identification of vegetation and soil carbon pools out of equilibrium in a process model via eddy covariance and biometric constraints

Assumptions of steady‐state conditions in biogeochemical modelling are often invoked because knowledge on the development status of the modelling domain is generally unavailable. Here, we investigate the role of vegetation pool sizes on nonequilibrium conditions through model‐data integration approaches for a set of sites using eddy covariance CO₂ flux data. The study is based on the Carnegie–Ames–Stanford Approach (CASA) model, modified (CASA_G) in order to evaluate the sensitivity of simulated net ecosystem production (NEP) fluxes to vegetation pool sizes. The experimental design is based on the inverse model optimization of different parameter vectors performed at the measurement site level. Each parameter vector prescribes different simulation dynamics that embody different model structural assumptions concerning (non)steady‐state conditions in vegetation and soil carbon pools. We further explore the potential of assimilating biometric constraints through the cost function for sites where in situ information on aboveground biomass or wood pools is available. The integration of biometric data yields marked improvements in the simulation of vegetation C pools compared to single constraints with eddy flux data. Overall, it is necessary to relax both vegetation and soil carbon pools for consistency with the observed data streams. Multiple constraints approaches also leads to variable model performance among the different experimental setups and model structures. We identify and assess the limitations of various model structures and the role of multiple constraints approaches for tackling issues of equifinality. These studies emphasize the need for establishing consistent data sets of fluxes and biometric data for successful model‐data fusion.     

Chirocentrids as engrauloids: evidence from suspensorium,branchial arches,and infraorbital bones (Clupeomorpha,Teleostei)

The Chirocentridae is a family of highly specialized large predatory clupeomorphs composed of two species from coastal waters of the Indian and western Pacific Oceans. Peculiarities of the anatomy of these fishes have puzzled ichthyologists who attempted to resolve their phylogenetic relationships. Despite controversy, it is currently accepted that the Chirocentridae is a family of Clupeiformes, included with the Clupeidae in the superfamily Clupeoidea. New data support an alternative hypothesis. Seven previously unreported derived character states from the suspensorium, branchial arches, and infraorbitals strongly indicate a hitherto unsuspected sister group relationship between the Chirocentridae and Engrauloidea, which comprises approximately 140 species of the commercially important fishes known as anchovies. These are character states: (1) the anterior margin of metapterygoid located anterior to the quadrate; (2) the ventral limb of hyomandibula and quadrate not separated by the metapterygoid; (3) the posterodorsal margin of metapterygoid in line with the condyle of articulation of the hyomandibula with the opercle; (4) the presence of a laminar outgrowth of the anterior margin of the quadrate; (5) the endochondral portion of the quadrate in the shape of an isosceles triangle; (6) the presence and arrangement of autogenous tooth plates on ceratobranchials 1 to 3; and (7) posterior region of infraorbital 1 well developed and extending along the ventral margin of infraorbital 2. Three of those character states are further modified and hypothesized as synapomorphies of the Engrauloidea: (1′) a substantial portion of the metapterygoid situated anterodorsal to the quadrate, (2′) articulation between the ventral limb of the hyomandibula and the quadrate, and (7′) infraorbitals 1 and 3 articulating by means of a well‐developed laminar process of the posterior region of infraorbital 1. The separation of the dorsal, paired elements of the branchial arches of the Chirocentridae and representative Engrauloidea is apomorphic within the Clupeoidei, and constitutes circumstantial evidence for the sister group relationship between those clades. Microphagy within the Engrauloidea is secondary, homoplastic to the same condition present in other clades of the Clupeiformes. The decomposition of character complexes into discrete morphological characters and its use in phylogenetic inference is discussed. The sister group relationship between the Chirocentridae and Engrauloidea renders the Clupeoidea paraphyletic. A new classification of the Clupeoidei, with the inclusion of the Chirocentridae in the Engrauloidea, is proposed. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 363–383.     

Separation of net ecosystem exchange into assimilation and respiration using a light response curve approach: critical issues and global evaluation

The measured net ecosystem exchange (NEE) of CO₂ between the ecosystem and the atmosphere reflects the balance between gross CO₂ assimilation [gross primary production (GPP)] and ecosystem respiration (R_eco). For understanding the mechanistic responses of ecosystem processes to environmental change it is important to separate these two flux components. Two approaches are conventionally used: (1) respiration measurements made at night are extrapolated to the daytime or (2) light–response curves are fit to daytime NEE measurements and respiration is estimated from the intercept of the ordinate, which avoids the use of potentially problematic nighttime data. We demonstrate that this approach is subject to biases if the effect of vapor pressure deficit (VPD) modifying the light response is not included. We introduce an algorithm for NEE partitioning that uses a hyperbolic light response curve fit to daytime NEE, modified to account for the temperature sensitivity of respiration and the VPD limitation of photosynthesis. Including the VPD dependency strongly improved the model's ability to reproduce the asymmetric diurnal cycle during periods with high VPD, and enhances the reliability of R_eco estimates given that the reduction of GPP by VPD may be otherwise incorrectly attributed to higher R_eco. Results from this improved algorithm are compared against estimates based on the conventional nighttime approach. The comparison demonstrates that the uncertainty arising from systematic errors dominates the overall uncertainty of annual sums (median absolute deviation of GPP: 47 g C m^?2 yr^?1), while errors arising from the random error (median absolute deviation: ～2 g C m^?2 yr^?1) are negligible. Despite site‐specific differences between the methods, overall patterns remain robust, adding confidence to statistical studies based on the FLUXNET database. In particular, we show that the strong correlation between GPP and R_eco is not spurious but holds true when quasi‐independent, i.e. daytime and nighttime based estimates are compared.     

The Cinnamon Ibon Hypocryptadius cinnamomeus is a forest canopy sparrow

The Cinnamon Ibon inhabits the canopy of cloud‐forest of Mindanao Island in the Philippines, and has until now been classified as an aberrant member of the Zosteropidae (white‐eyes). We assessed the systematic position of this enigmatic species using DNA sequence data (two mitochondrial markers, two nuclear introns and two nuclear exons) and broad taxon sampling. The species was robustly placed among the granivorous passeroid clades, as a basal branch in the family of true sparrows, Passeridae. Morphological data lend further support, as the Cinnamon Ibon shows similar specialization of the skull as other granivorous passeroids. The species’ restricted distribution in the montane cloud‐forest of the island of Mindanao, which is of oceanic origin, is difficult to explain without assuming an over‐water dispersal event.     

Regulation of G Protein-Coupled Receptor Signaling by A-Kinase Anchoring Proteins

Specificity of transduction events is controlled at the molecular level by scaffold, anchoring, and adaptor proteins, which position signaling enzymes at proper subcellular localization. This allows their efficient catalytic activation and accurate substrate selection. A-kinase anchoring proteins (AKAPs) are group of functionally related proteins that compartmentalize the cAMP-dependent protein kinase (PKA) and other signaling enyzmes at precise subcellular sites in close proximity to their physiological substrate(s) and favor specific phosphorylation events. Recent evidence suggests that AKAP transduction complexes play a key role in regulating G protein-coupled receptor (GPCR) signaling. Regulation can occur at multiple levels because AKAPs have been shown both to directly modulate GPCR function and to act as downstream effectors of GPCR signaling. In this minireview, we focus on the molecular mechanisms through which AKAP-signaling complexes modulate GPCR transduction cascades.