Retroviral GAG proteins recruit AGO2 on viral RNAs without affecting RNA accumulation and translation

Cellular micro(mi)RNAs are able to recognize viral RNAs through imperfect micro-homologies. Similar to the miRNA-mediated repression of cellular translation, this recognition is thought to tether the RNAi machinery, in particular Argonaute 2 (AGO2) on viral messengers and eventually to modulate virus replication. Here, we unveil another pathway by which AGO2 can interact with retroviral mRNAs. We show that AGO2 interacts with the retroviral Group Specific Antigen (GAG) core proteins and preferentially binds unspliced RNAs through the RNA packaging sequences without affecting RNA stability or eliciting translation repression. Using RNAi experiments, we provide evidences that these interactions, observed with both the human immunodeficiency virus 1 (HIV-1) and the primate foamy virus 1 (PFV-1), are required for retroviral replication. Taken together, our results place AGO2 at the core of the retroviral life cycle and reveal original AGO2 functions that are not related to miRNAs and translation repression.     

Vinasse organic matter quality and mineralization potential, as influenced by raw material, fermentation and concentration processes

Both dilute and concentrated vinasse can be spread on agricultural fields or used as organic fertilizer. The effects of different characteristics of the original raw material on the biochemical composition of vinasse and their C and N mineralization in soil were investigated. Vinasse samples were obtained from similar industrial fermentation processes based on the growth of microorganisms on molasses from different raw material (sugar beet or sugar cane) and vinasse concentration (dilute or concentrated). The nature of the raw material used for fermentation had the greatest effect on the nature and size of the resistant organic pool. This fraction included aromatic compounds originating from the raw material or from complex molecules and seemed to be quantitatively related to acid-insoluble N. Samples derived from sugar beet were richer in N compounds and induced greater net N mineralization. The effect of evaporation varied with the nature of the raw material. Concentration led to a slight increase in the abundance of phenolic compounds, acid-insoluble fraction, and a slight decrease in the labile fraction of vinasses partly or totally derived from sugar beet. The effect of the dilute vinasse from sugar cane was greater. The concentrated vinasse had a smaller labile fraction, induced N immobilization at the beginning of incubation, and exhibited greater N concentration in the acid-insoluble fraction than the dilute vinasse.     

Formation of vacuolar tannin deposits in the chlorophyllous organs of Tracheophyta: from shuttles to accretions

Most Tracheophyta synthesize-condensed tannins (also called proanthocyanidins), polymers of catechins, which appear in the vacuole as uniformly stained deposits—termed tannin accretions—lining the inner face of the tonoplast. A large body of evidence argues that tannins are formed in recently described thylakoid-derived organelles, the tannosomes, which are packed in membrane-bound shuttles (Brillouet et al. 2013); it has been suggested that shuttles agglomerate into tannin accretions. The aim of the study was to describe the ontogenesis of tannin accretions in members of the Tracheophyta. For this purpose, fresh specimens of young tissues from diverse Tracheophyta were cut, gently lacerated in paraformaldehyde, and examined using light, epifluorescence, confocal, and transmission electron microscopy. Fresh samples were also incubated with gelatin-Oregon Green, a fluorescent marker of condensed tannins. Our observations showed that vacuolar accretions (1?→?40 μm), that constitute the typical form of tannin storage in tannin-producing Tracheophyta, are formed by agglomeration (not fusion) of shuttles containing various proportions of chlorophylls and tannins.     

Modelling of the dynamics of Al and protons in the rhizosphere of maize cultivated in acid substrate

The object of this study was to analyze the dynamics of Al and protons in the rhizosphere of maize cultivated in a simple acid substrate, so as to allow the use of a dynamic model of the functioning of a rhizosphere consisting of an organic phase (an agarose gel) and a mineral phase (an amorphous aluminium hydroxide). Two cultivars of maize (Zea mays L.), one Al-sensitive and the other Al-tolerant, were cultivated on this substrate in the presence of different proportions of NH ₄ ⁺ and NO ₃ ^- , which served to acidify the rhizosphere to a greater or lesser extent. The state of the agarose gel and of the cell walls of the roots were monitored using an ion exchange model which had previously been calibrated for each substrate. The experiment showed that Al and protons reduce root growth and the Ca and Mg content in the root, while relative growth varies little between pH 4.0 and pH 4.5. The model showed that competition between Al and protons for the binding sites of the cell walls might account for these results. The sensitivity of the model to the rate of Al(OH)₃ dissolution and to the cation exchange capacity of the culture substrate was tested by numerical simulation. When roots release protons and dissolve Al(OH)₃ in the rhizosphere, there is little possibility of Al desorption by protons on the cell walls at pHs compatible with good root growth of maize, plant specie sensitive to Al and H. Furthermore, the phytotoxicity of the different forms of Al hydroxides should be considered only in taking into account the dynamics of the whole system, in particular the solubilisation of Al in the rhizosphere. This revised version was published online in June 2006 with corrections to the Cover Date.     

The “acrostyle”: A newly described anatomical structure in aphid stylets

The recent demonstration that a plant virus could be retained on protein receptors located exclusively in a small area inside the common duct at the tip of aphid maxillary stylets indicated the possible existence of a distinct anatomical structure at this level. Since no distinct feature within the common duct of any aphid species has ever been reported in the literature, we first carefully re-examined the distal extremity of the maxillary stylets of Acyrthosiphon pisum using transmission- and scanning-electron microscopy. Here, we describe an area of the cuticle surface displaying a different structure that is limited to a “band” paving the bottom of the common duct in each opposing maxillary stylet. This band starts at the very distal extremity, adopts a “comma-like” shape as it continues up towards the salivary canal, reducing in width and disappearing before actually reaching it. Investigations on several aphid species led to the conclusion that this anatomical feature—which we have tentatively named the “acrostyle”—is highly conserved among aphids. We then produced an antibody recognizing a consensus peptide located in the middle of the RR-2 motif of cuticular proteins from A. pisum and showed that this motif is accessible specifically within the acrostyle, indicating a higher concentration of cuticular proteins. While it is clear that at least some viruses can use the acrostyle to interact with their aphid vectors to ensure plant-to-plant transmission, the role of this new “organ” in aphid biology is unknown and calls for further investigation in the near future.     

The dynamics of protons,aluminium, and calcium in the rhizosphere of maize cultivated in tropical acid soils: experimental study and modelling

The goals of this work were to understand the dynamics of H⁺, Al and Ca in the rhizosphere of maize cultivated in tropical acid soils, and to evaluate the contribution of the dissolution kinetics of the Al-hydroxides to Al dynamics. The study of the dissolution kinetics was based on a comparison between experimental and simulated data, using a model of the chemical processes in the rhizosphere. Two Oxisols, pH 5.1 and 4.6, and one Ultisol, pH 5.2, were studied. An Al-tolerant maize variety (Zea mays L.) was grown for 14 days on a 3-mm thick soil layer. The composition of the soil and the soil solution, together with the concentration of Al in the roots, were determined throughout the experiment. The results showed that root growth (i) decreased the soil solution pH, up to one pH unit, (ii) increased Al concentration in the soil solution, (iii) increased exchangeable Al, and (iv) decreased exchangeable Ca. Soil solution pH, exchangeable Al, and exchangeable Ca were closely linked. Exchangeable Al increased 1.5 – 3.0 times, due to the dissolution of easily mobilised Al components. In addition, Al accumulation in roots depended mainly on Al in the soil solution. Modelling the interactions between H⁺, Al, and Ca proved that the main factor determining Al in the soil solution was the kinetic reactivity of the easily mobilised Al components. These components, probably poorly crystallised Al-hydroxides, are key players in the functioning of the rhizosphere in tropical acid soils.     

The clathrin adaptor complex AP-1 binds HIV-1 and MLV Gag and facilitates their budding

Retroviral assembly is driven by Gag, and nascent viral particles escape cells by recruiting the machinery that forms intralumenal vesicles of multivesicular bodies. In this study, we show that the clathrin adaptor complex AP-1 is involved in retroviral release. The absence of AP-1mu obtained by genetic knock-out or by RNA interference reduces budding of murine leukemia virus (MLV) and HIV-1, leading to a delay of viral propagation in cell culture. In contrast, overexpression of AP-1mu enhances release of HIV-1 Gag. We show that the AP-1 complex facilitates retroviral budding through a direct interaction between the matrix and AP-1mu. Less MLV Gag is found associated with late endosomes in cells lacking AP-1, and our results suggest that AP-1 and AP-3 could function on the same pathway that leads to Gag release. In addition, we find that AP-1 interacts with Tsg101 and Nedd4.1, two cellular proteins known to be involved in HIV-1 and MLV budding. We propose that AP-1 promotes Gag release by transporting it to intracellular sites of active budding, and/or by facilitating its interactions with other cellular partners.     

Fatp1 Deficiency Affects Retinal Light Response and Dark Adaptation,and Induces Age-Related Alterations

FATP1 is involved in lipid transport into cells and in intracellular lipid metabolism. We showed previously that this protein interacts with and inhibits the limiting-step isomerase of the visual cycle RPE65. Here, we aimed to analyze the effect of Fatp1-deficiency in vivo on the visual cycle, structure and function, and on retinal aging. Among the Fatp family members, we observed that only Fatp1 and 4 are expressed in the control retina, in both the neuroretina and the retinal pigment epithelium. In the neuroretina, Fatp1 is mostly expressed in photoreceptors. In young adult Fatp1^−/− mice, Fatp4 expression was unchanged in retinal pigment epithelium and reduced two-fold in the neuroretina as compared to Fatp1^+/+ mice. The Fatp1^−/− mice had a preserved retinal structure but a decreased electroretinogram response to light. These mice also displayed a delayed recovery of the b-wave amplitude after bleaching, however, visual cycle speed was unchanged, and both retinal pigment epithelium and photoreceptors presented the same fatty acid pattern compared to controls. In 2 year-old Fatp1^−/− mice, transmission electron microscopy studies showed specific abnormalities in the retinas comprising choroid vascularization anomalies and thickening of the Bruch membrane with material deposits, and sometimes local disorganization of the photoreceptor outer segments. These anomalies lead us to speculate that the absence of FATP1 accelerates the aging process.     

A homologue of the Agrobacterium tumefaciens VirB and Bordetella pertussis Ptl type IV secretion systems is essential for intracellular survival of Brucella suis

Analysis of a TnblaM mutant of Brucella suis 1330, identified as being unable to multiply in Hela cells, allowed us to identify a 11 860 bp region of the B. suis genome encoding a type IV secretion system, homologous to the VirB system of Agrobacterium tumefaciens and the Ptl system of Bordetella pertussis. DNA sequence revealed 12 open reading frames (ORFs) encoding homologues of the 11 VirB proteins present in the pTi plasmid of Agrobacterium with a similar genetic organization, and a twelfth ORF encoding a putative lipoprotein, homologous to a protein involved in mating pair formation during bacterial conjugation and to adhesins used by Pseudomonas species to bind to plant roots. Phylogenetic trees based on the sequences of VirB4 and VirB9 protein homologues suggest that evolution of the systems from DNA transfer towards protein secretion did not stem from a single event but that the protein secretion systems have evolved independently. Four independent mutants in virB5, virB9 or virB10 were highly attenuated in an in vitro infection model with human macrophages. The virulence was restored by complementation with a plasmid containing the full virB region. The virB region appears to be essential for the intracellular survival and multiplication of B. suis.