Electrophoretic pseudopolymorphism: the role of modifications illustrated by proteolysis

The term "pseudopolymorphism" refers to a situation, where there is no simple correspondence between genotype and phenotype: a single genotype may be moulded into several phenotypes. It is known that broad substrate specificity of enzymes may be one of the causes for pseudopolymorphism. This article deals with the other cause for this phenomenon--a consequence of post-translation modifications, such as limited proteolysis. Variability of some enzymes of grass carp Ctenopharyngodon idella Val. (Pisces, Cyprinidae) was studied by gel electrophoresis. It was found that variability of isozyme patterns of lactate dehydrogenase (LDH), glucose-6-phosphate dehydrogenase (G-6-PDH), malic enzyme (ME) and esterase (EST) is connected with the differences in protease activity of grass carp liver homogenates. The fish isozyme patterns of high (and, partially, intermediate) proteinase activity had some anomalies: displacement of fractions, one or several additional fractions, decreased activity of single fractions or the whole spectrum. In some cases, this variability looked like a classical polymorphic system specified by two alleles of one locus. The effect of enzymes' and proteins' modifications on electrophoretical pseudopolymorphism is discussed.     

Hofmeister effect in ion transport: reversible binding of halide anions to the roflamycoin channel.

We have studied the anion-dependent gating of roflamycoin ion channels using spectral analysis of noise in currents through multichannel planar lipid bilayers. We have found that in addition to low frequency current fluctuations that may be attributed to channel switching between open and closed conformations, roflamycoin channels exhibit a pronounced higher frequency noise indicating that the open channel conductance has substates with short lifetimes. This noise is well described by a Lorentzian spectrum component with a characteristic cutoff frequency that depends on the type of halide anions according to their position in the Hofmeister series. It is suggested that transitions between the substates correspond to a reversible ionization of the channel by a penetrating anion that binds to the channel structure, more chaotropic anions being bound for longer times. Within a framework of a two-substate model, the duration of the substate with reduced electrostatic barrier for cation current varies exponentially with anion electron polarizability. This explains two features of the roflamycoin channel reported earlier: the increase in apparent single-channel conductance along the series F- < Cl- < Br- < I- and the reverse of channel selectivity from anionic for KF to cationic for KI.     

Asymmetry of syringomycin E channel studied by polymer partitioning

To probe the size of the ion channel formed by Pseudomonas syringae lipodepsipeptide syringomycin E, we use the partial blockage of ion current by penetrating poly(ethylene glycol)s. Earlier experiments with symmetric application of these polymers yielded a radius estimate of approximately 1 nm. Now, motivated by the asymmetric non-ohmic current-voltage curves reported for this channel, we explore its structural asymmetry. We gauge this asymmetry by studying the channel conductance after one-sided addition of differently sized poly(ethylene glycol)s. We find that small polymers added to the cis-side of the membrane (the side of lipodepsipeptide addition) reduce channel conductance much less than do the same polymers added to the trans-side. We interpret our results to suggest that the water-filled pore of the channel is conical with cis- and trans-radii differing by a factor of 2-3 and that the smaller cis-radius is in the 0.25-0.35 nm range. In symmetric, two-sided addition, polymers entering the pore from the larger opening dominate blockage.     

The coupled variability of quantitative and qualitative traits: a single-locus 3-allele model

Statistics for estimation of additive and non-additive effects of marker gene on quantitative trait are developed from the mad-model of a quantitative trait for three-allelic codominant marker locus. All they may be obtained directly from population data, without any hybridological experiments.     

Comparative evaluation of diagnostic preparations

The diagnostic value of preparations is commonly characterized by sensitivity and specificity. But not all these characteristics make it possible to decide unequivocally which of the preparations to be compared is superior to the other one with respect to its diagnostic value. It is proposed that in the choice of a diagnostic preparation its capacity to provide data for exact diagnosis should be considered, i.e. the additional characteristic indicating the spread of the disease under study. As an example, the comparison of the diagnostic value of conventional methods and the polymerase chain reaction in the diagnostics of helicobacteriosis is presented. The described method for the evaluation of the diagnostic value of the preparation is well-grounded, simple and obvious.     

Variability and dynamics of micronuclei rate in participants of transatlantic march of the VIIth Ukranian Antarctic expedition

The estimation of individual variability and group dynamics of micronuclei rate in buccal cells of participants of transatlantic march of the VIIth Ukrainian Antarctic expedition (Sevastopol--UAS "Akademik Vernadsky"--Sevastopol) was carried out. The general average rate of micronuclei was 2.20 per thousand. Individual values of micronuclei frequencies varied in wide limits. The maximum value of CV was 92.4% and the minimal one was 48.4%. Individual averages of micronuclei rates varied from 1.70 to 2.78 per thousand. Dependence of individual and group dynamics of micronuclei rates on environmental factors (temperature, atmospheric pressure and storm activity) was tested. No significant correlation of these parameters was found.     

Kinetics of opening and closure of syringomycin E channels formed in lipid bilayers

A cyclic lipodepsipeptide, syringomycin E (SME), incorporated into planar lipid membranes forms two types of channels ("small" and "large") different in their conductance by approximately a factor of six (Biophys. J. 74:2918-2925 (1998)). We analysed the dynamics of the SME-induced transmembrane current under voltage-clamp conditions to clarify the mechanisms of formation of these channels. The voltage-dependent opening/closure of SME channels in lipid bilayers are interpreted in terms of transitions between three types of clusters including 6-7 SME molecules and some lipid molecules. The initial cluster, the precursor of the other two, was in equilibrium with SME monomer molecules at the membrane surface. The other two types of clusters (State 1 and State 2) were formed from the precursor and also during their interconversions (the consecutive-parallel mechanism of transitions). State 1 was a non-conducting state in equilibrium with small channels, which partially determined the ionic conductance of lipid bilayers modified by SME. State 2 corresponded to large SME channels, major contributors to the conductance of a bilayer. The results of the theoretical analysis based on the chemical kinetics concepts were consistent with experimental observations. Such properties of the SME-induced channels as cluster organisation, voltage dependence and the existence of a non-conducting state are all features shared by many ion channels in biological membranes. This makes it possible to use SME channels as a model to study naturally occurring ion channels.