The activation of the decapping enzyme DCP2 by DCP1 occurs on the EDC4 scaffold and involves a conserved loop in DCP1

The removal of the 5′-cap structure by the decapping enzyme DCP2 and its coactivator DCP1 shuts down translation and exposes the mRNA to 5′-to-3′ exonucleolytic degradation by XRN1. Although yeast DCP1 and DCP2 directly interact, an additional factor, EDC4, promotes DCP1–DCP2 association in metazoan. Here, we elucidate how the human proteins interact to assemble an active decapping complex and how decapped mRNAs are handed over to XRN1. We show that EDC4 serves as a scaffold for complex assembly, providing binding sites for DCP1, DCP2 and XRN1. DCP2 and XRN1 bind simultaneously to the EDC4 C-terminal domain through short linear motifs (SLiMs). Additionally, DCP1 and DCP2 form direct but weak interactions that are facilitated by EDC4. Mutational and functional studies indicate that the docking of DCP1 and DCP2 on the EDC4 scaffold is a critical step for mRNA decapping in vivo. They also revealed a crucial role for a conserved asparagine–arginine containing loop (the NR-loop) in the DCP1 EVH1 domain in DCP2 activation. Our data indicate that DCP2 activation by DCP1 occurs preferentially on the EDC4 scaffold, which may serve to couple DCP2 activation by DCP1 with 5′-to-3′ mRNA degradation by XRN1 in human cells.     

Expression of a C3 plant Rubisco SSU gene in regenerated C4 Flaveria plants

We report the successful transformation, via Agrobacterium tumefaciens infection, and regeneration of two species of the genus Flaveria: F. brownii and F. palmeri. We document the expression of a C₃ plant gene, an abundantly expressed ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit gene isolated from petunia, in these C₄ plants. The organ-specific expression of this petunia gene in Flaveria brownii is qualitatively identical to its endogenous pattern of expression.     

Ethylene Production and 1-Aminocyclopropane-1-Carboxylic Acid Conjugation in Thermoinhibited Cicer arietinum L. Seeds

The effect of supraoptimal temperatures (30°C, 35°C) on germination and ethylene production of Cicer arietinum (chick-pea) seeds was measured. Compared with a 25°C control, these temperatures inhibited both germination and ethylene production. The effect of supraoptimal temperatures could be alleviated by treating the seeds with ethylene. It was concluded that one effect of high temperature on germination was due to its negative effect on ethylene production. This inhibitory effect of high temperature was due to increased conjugation of 1-aminocyclopropane-1-carboxylic acid to 1-(malonylamino)cyclopropane-1-carboxylic acid and to an inhibition of ethylene-forming enzyme activity.     

Biochemical properties of 1-aminocyclopropane-1-carboxylate N-malonyltransferase activity from early growing embryonic axes of chick-pea (Cicer arietinum L.) seeds

In the present work, certain biochemical characteristics ofthe enzyme 1-aminocyclopropane-1-carboxylate N-malonyltransferase(ACC N-MTase) which is responsible for the malonylation of 1-aminocyclopropane-1-carboxylate(ACC) in chickpea (Cicer arietinum) are described. Phosphatebuffer was the most appropriate buffer with regard to enzymestability and, therefore, ACC N-MTase was extracted, assayedand purified in the presence of this buffer. ACC N-MTase waspartially purified approximately 900-fold from embryonic axesof chick-pea seeds using ammonium sulphate precipitation, hydrophobicinteraction and molecular filtration chromatography. By gelfiltration chromatography on Superose-12, the molecular massof the enzyme was estimated to be 54 4 kDa. ACC N-MTase hadan optimal pH and temperature of 7.5 and 40C, respectively,as well as a K_m for ACC and malonyl-CoA of 400 M and 90 M,respectively. D-Phenylalanine was a competitive inhibitor ofACC N-MTase with respect to ACC (K_i of 720 M), whereas co-enzymeA was a competitive product inhibitor with respect to malonyl-CoA(K_i of 300 M) and a non-competitive inhibitor with respectto ACC (K_i of 600 M). Under optimal assay conditions, ACC N-MTasewas strongly inhibited by (a)divalent [Zn²⁺>Mg²⁺>>Co²⁺>Co²⁺>(NH₄)²⁺>Fe²⁺]and monovalent metal cations (Li⁺>Na⁺>K⁺), without activitybeing detected in the presence of Hg²⁺, and (b) PCMB or mersalicacid, suggesting that sulphydryl group(s) are involved at theactive site of the enzyme. Key words: ACC-N-malonyltransferase, Cicer arietinum, embryonic axes, ethylene, germination, seeds     

Pollen-ovule ratio,pollen size,and breeding system in Astragalus (Fabaceae) subgenus Epiglottis: a pollen and seed allocation approach

The correlation between pollen/ovule (P/O) ratio and breeding system has generally been accounted for either on the basis that P/O reflects pollination efficiency, or in terms of the sex allocation theory. The following were assessed for taxa belonging to genus Astragalus subgenus Epiglottis: 1) Degree of correlation between P/O and the breeding system, measured by means of autofertility; 2) The absence or existence of correlation between P/O and pollen grain size; and 3) The ability of various theories to account for the results obtained. Results showed a minimal correlation between P/O and autofertility, and between P/O and pollen grain size in the taxa studied. Analysis of these results in terms of the sex allocation theory enabled this correlation to be explained as a function of the variation existing between taxa with respect to the resources invested in each pollen grain and in each ovule. The predictive capacity of this theory, which has moreover proven valuable in explaining the structural peculiarities of the androecium in these taxa, was also highlighted. The type of self-pollination applicable was also discussed, as was the phenotypic model of selection of self-fertilization considered most plausible for these taxa.     

Water relations, gas exchange and abscisic acid content of Lupinus cosentinii leaves in response to drying different proportions of the root system

Soil columns in which the root system was divided into threeequal layers, each 24 cm in diameter and 33 cm high were usedto examine the influence of drying different proportions ofthe root system on the water relations, gas exchange and abscisicacid (ABA) concentration of lupin (Lupinus cosentinii Guss.cv. Eregulla) leaves. The treatments imposed were (i) all threelayers adequately watered (control), (ii) the upper layer unwateredwith the remaining layers kept adequately watered, (iii) thetwo upper layers unwatered with the basal layer kept adequatelywatered, (iv) all three layers unwatered. The treatments wereapplied at 56 d after sowing (DAS), and continued for 21 d inthe treatment in which the three layers were dried and for 36d in the other three treatments. After 21 d, the soil matricpotential in the layers that were unwatered had decreased toemdash 1.3MPa, compared to - 0.03 MPa in the adequately-wateredlayers. Within 8 d of cessation of watering, plants with the entireroot system in drying soil had significantly lower stomatalconductances, lower rates of net photosynthesis, and higherleaf ABA contents than did adequately-watered plants. Whilethe leaf osmotic potential decreased within 8 d of cessationof watering, the leaf water potential did not change for thefirst 15 d after water was withheld. After withholding waterfrom all layers, the shoot dry matter was 63% lower than thatin the adequately-watered plants. In the two partially-droughtedtreatments, 17% and 48% of the root length was subjected todrying. Compared to the adequately-watered plants, drying upto 50% of the root system for 36 d, in the two partially-droughtedtreatments, did not reduce stomatal conductance, net photosynthesis,or plant growth. Similarly, there was no significant effecton leaf water potential or osmotic potential. When either theupper or upper and middle layers of soil were dried, the ABAcontent of the leaves for most of the drying period was slightly,but not significantly, higher than in leaves of the adequately-wateredplants. The results suggest that lupins with a well-established rootsystem can utilize localized supplies of available soil waterto maintain leaf gas exchange despite appreciable portions ofthe root system being in dry soil. In contrast to other studies,the results also suggest that when only a portion of the soilvolume is dry and adequate water is available in the wet zone,root signals do not influence stomatal conductance and leafgas exchange of lupin. Key words: Abscisic acid, gas exchange, lupins, split-roots, water deficit     

Large DNA inversions,deletions, and TaqI site mutations in severe haemophilia A

Large DNA inversions caused by an intrachromosomal recombination between homologous regions located in intron 22 and 5 of the factor VIII gene have recently been identified in patients with severe haemophilia A. To evaluate better the prevalence of this large inversion and to estimate the overall sensitivity of the Southern blot/hybridization method we analysed the factor VIII gene of 49 unrelated patients with severe haemophilia A. All patients were screened for the inversion mutation, TaqI site mutations, and deletions. Mutations were identified in 31 (63%) patients, and comprised 24 large inversions, 4 partial deletions, and 3 point mutations. Three different haplotypes were characterised in the patients presenting the inversion mutation, confirming its independent origin. Two novel deletions are reported: a large one spanning from intron 14 to intron 22 and a deletion of 86 bp comprising the 3 region of exon 1 and 39–41 bp of intron 1. DNA sequencing of the deletion junction showed no significant homology between normal 5 and 3 sequences around the breakpoints. A novel missense mutation is also reported: CGAGGA, Arg-2209 to Gly. These results confirm that the inversion mutation is the most common cause of severe haemophilia A and indicate that the Southern blot/hybridization assay should be used as the first method for screening of mutations in severe haemophilia A.     

Molecular evolution of the Rh3 gene in Drosophila

Previous investigations into the evolution of the Drosophila opsin gene family are extended by inter- and intraspecific DNA sequence comparisons of the Rh3 locus in the melanogaster subgroup and D. pseudoobscura. Two separate statistical tests of the neutral-mutation hypothesis suggest that random genetic drift is responsible for virtually all of the observed amino acid replacement substitutions within the melanogaster subgroup. Analyses incorporating the D. pseudoobscura sequences are enigmatic due to the accumulation of multiple substitutions, because the McDonald-Kreitman test is not applicable to species comparisons that approach mutational saturation. However, the data from D. pseudoobscura are not inconsistent with selective neutrality. The ratio of amino acid polymorphisms within species to fixed differences between species imply that these are approximately 31 possible neutral single-step amino-acid-replacement substitutions at this locus. Synonymous substitutions are unevenly distributed among the structural domains of the Rh3 gene. Patterns of synonymous polymorphism are analyzed with respect to GC content and codon bias, and are compared to other loci from the same species.