Molecular and morphometric variation in two sibling species of the genus Praomys (Rodentia: Muridae): implications for biogeography

The rodent genus Praomys is widely distributed in the African tropics. The species are cryptic, rendering the species taxonomy unclear. There are differences of opinion concerning the specific status of Praomys misonnei and Praomys tullbergi, and their geographical distribution. We sequenced the cytochrome b and/or the 16S gene of 221 specimens from 12 countries in order to evaluate the genetic variability within these two species, and to precisely determine their geographical distribution. Morphological and morphometrical analyses on the sequenced specimens were also performed to find criteria useful for the identification of museum specimens. Our results confirm that P. misonnei and P. tullbergi are two valid species that can be separated by molecular data. However, no single discrete morphological character or simple metric measurement can be used to discriminate them. The percentage of misclassified individuals in multivariate discriminant analysis is relatively high (10%). The two species have allopatric distributions: P. tullbergi occurs in West Africa, from eastern Guinea to western Ghana, and P. misonnei is widely distributed from eastern Ghana to western Kenya. Within P. misonnei we identified three or four major geographical clades: a West Central African clade, an East African clade, a Nigerian clade, and a possible West African clade. Within P. misonnei, high geographical morphometrical variability was also identified. The role of both rivers and Pleistocene forest refugia in promoting speciation within the genus Praomys is discussed. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 397–419.     

Short and Long Term Fluctuations of the Leaf Mass Per Area of Tomato Plants--Implications for Growth Models

The leaf mass per unit leaf area (LMA) is a key variable inmany growth models, since it is often used to predict leaf areaexpansion from leaf dry weight increase, orvice versa. Influencesof source-sink balance on leaf area, leaf dry weight, LMA, andleaf content in non-structural carbohydrates were investigatedin glasshouse tomato crops. The source-sink balance was manipulatedby artificial shading, CO₂enrichment or fruit removal usingdifferent tomato cultivars. Leaf area was hardly affected bycompetition for assimilates except under extreme conditions.In contrast, leaf dry weight, and consequently LMA, underwentlarge and rapid fluctuations in response to any factor thatchanged source and sink activities. A 60% reduction of photosyntheticallyactive radiation involved a 24% decrease in LMA after 10 d.Carbon dioxide enrichment and fruit removal induced about a45% and 15% increase in LMA, respectively, on plants with twofruiting trusses, but hardly affected LMA of producing plants.No significant cultivar effect could be identified. Changesin starch and soluble sugar content in leaves accounted foronly 29% of diurnal variations in LMA, suggesting regular fluctuationsof other components. We propose that structural LMA varies betweena maximum and a minimum value according to the ratio of assimilatesupply and demand during leaf development. Leaf area is independentof the supply of assimilates when the minimum structural LMAis realised. When the maximum structural LMA is attained, astorage pool of assimilates may accumulate in leaves duringperiods of high supply and low demand. We present a model includingthese hypotheses, which predicts structural and non-structuralLMA variations of plants with different source-sink ratios.Copyright1998 Annals of Botany Company Tomato,Lycopersicon esculentumMill., SLA, SLW, leaf growth, vegetative sink strength, assimilate competition, source-sink ratio, non-structural carbohydrate, models.     

Floral sex ratios and gynomonoecy in Solidago (Asteraceae)

Gynomonoecy is the sexual system in which individual plants bear both female and bisexual flowers. Little attention has been paid to the adaptive significance of this sexual system, which is particularly prevalent in the Asteraceae. We investigated one hypothesized advantage of having two flower types, namely that this arrangement permits flexibility in allocation of resources to male and female reproductive functions. We examined six species of goldenrod ( Solidago ), a genus of gynomonoecious, perennial herbs. In greenhouse experiments, we varied one or more of three environmental variables – light, nutrients and water – and/or examined heads in different positions on the plants. Most variables had little or no effect on the proportion of ray flowers. Significant effects were found for light in 0 of 5 experiments, for nutrients in 4 of 9 experiments and for water in 0 of 3 experiments. Heads in different positions in the inflorescence differed in the proportion of ray flowers in half of the experiments, though the differences were small. We also monitored temporal patterns in four species and found that the proportion of ray flowers increased significantly over the blooming period and the number of flowers per head declined. Because of the small number of significant effects and their modest magnitude, we conclude that the presence of two flower types in goldenrods is probably not advantageous in allowing flexibility in sex expression. It seems likely that this sexual system has been more important either in increasing pollinator attraction or in reducing pollen–pistil interference. The small observed changes in floral ratios were generally accompanied by changes in disc size in a manner consistent with an explanation based on allometry.  © 2002 The Linnean Society of London, Biological Journal of the Linnean Society , 2002, 77 , 413–422.     

Comparative phylogeography of two sibling species of forest‐dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past forest fragmentation

Two sibling species of the rodent genus Praomys occur in West African forests: P. tullbergi and P. rostratus. By sampling across their geographical ranges (459 individuals from 77 localities), we test the hypothesis that climatic oscillations during the Quaternary made an impact on the observed pattern of cytochrome b sequence variation. We show that, although these two species have parapatric geographical distributions, their phylogeographical histories are dissimilar, which could be related to their distinct ecological requirements. Since the arid phases of the Pleistocene were characterized by isolated forest patches, and intervening wetter periods by forest expansion, these changes in forest cover may be the common mechanism responsible for the observed phylogeographical patterns in both of these species. For example, in both species, most clades had either allopatric or parapatric geographical distributions; however, genetic diversity was much lower in P. tullbergi than in P. rostratus. The genetic pattern of P. tullbergi fits the refuge hypothesis, indicating that a very small number of populations survived in distinct forest blocks during the arid phases, then expanded again with forest recovery. In contrast, a number of populations of P. rostratus appear to have survived during the dry periods in more fragmented forest habitats, with varying levels of gene flow between these patches depending on climatic conditions and forest extent. In addition, historical variations of the West African hydrographic network could also have contributed to the pattern of genetic differentiation observed in both species.     

Systematics of African lowland rainforest Praomys (Rodentia, Muridae) based on molecular and craniometrical data

Representatives of the genus Praomys occur throughout the African intertropical zone. It is unclear how many species this genus contains, nor do we know the exact distribution ranges and phylogenetic relationships of these taxa. Using molecular (16S rRNA gene sequencing) and morphological (multivariate craniometry) analyses we clarify the taxonomy and phylogenetic relationships among the Praomys occurring in Africa's lowland tropical rainforests. We studied most species known from this area, based on specimens collected in seven countries (Guinea, Ivory Coast, Cameroon, Central African Republic, Gabon, Congo Republic and Democratic Republic of Congo). In our study, Praomys appears to be monophyletic. Our results identify two species complexes: the jacksoni complex includes at least two species ( P. jacksoni and P. mutoni ) and the tullbergi complex contains at least four species ( P. tullbergi , P. rostratus , P. misonnei , P. petteri ). Although the 16S rRNA gene appears insufficient to resolve the phylogenetic relationships among all the members of the tullbergi species complex, it is suitable for the identification of most of the studied species, and its use has allowed us to redefine the geographical limits of several species.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 145 , 539–553.     

Disentangling the impact of demographic factors on population differentiation of an endangered freshwater crayfish (Austropotamobius pallipes) using population density and microsatellite data

1. Habitat fragmentation of stream ecosystems often results in decreased connectivity between populations and lower population sizes. Hence, understanding how habitat fragmentation affects genetic erosion is important for the preservation of freshwater biodiversity, in particular, as small populations suffer from loss of genetic diversity through genetic drift and loss of fitness because of inbreeding, increasing the risk of extinction. 2. Here, we assess the impact of demographic factors on population differentiation in the endangered freshwater crayfish Austropotamobius pallipes by analysing population genetic structure, estimating effective population sizes and comparing levels of polymorphism at five microsatellite loci with density estimates of 10 populations within a small French catchment that has become progressively confined to headwaters over the last six decades. 3. Levels of expected heterozygosity and allelic richness per population were relatively low (0.214–0.396 and 1.6–2.6, respectively). We found strong genetic differentiation between these geographically close populations (F_ST = 0.283), with weak statistical evidence for a pattern of isolation by distance. Estimates of effective population size were low (<150) in most populations, but potentially reached several thousands in three populations. 4. Population density and allelic richness were strongly positively correlated. A robust relationship between population density and heterozygosity values was also noted, but only after discarding two populations for which significant genetic signatures of a recent bottleneck were found; these two populations displayed high expected heterozygosity compared with a very low density. Populations with the highest densities of individuals had the highest effective population size estimates and vice versa. 5. Our results clearly show the importance of demographic factors and genetic drift on A. pallipes populations. Furthermore, analysis of genetic and population density data is a pragmatic and efficient approach to corroborate inferences from genetic data and can be particularly useful in the identification of populations experiencing a bottleneck and therefore in conservation genetics studies aiming at identifying priority populations for conservation.     

Quantification of sexual dimorphism in Asellus aquaticus (Crustacea: Isopoda) using outline approaches

A marked sexual dimorphism is often observed in arthropods species in which males perform precopulatory mate guarding. It is generally thought to reflect the influence of sexual selection. Until now, sexual dimorphisms associated with mate guarding have mainly been qualitatively described. However, assessing the effects of sexual selection on sexual dimorphims requires a preliminary quantitative assessment of differences in morphology between sexes. Using Fourier analyses, we tested if morphological dimorphisms could be quantitatively assessed in the isopod Asellus aquaticus . In addition, we checked whether sexual dimorphism in shape was exclusively related to mate guarding through considering characters that are not, a priori , implicated in mating behaviour. To assess the potential role of sexual selection in shaping morphology, we then examined how dimorphic characters could influence males' pairing success. Three characters (pleotelson, paraeopods 4 and 5) differed significantly in shape between males and females. In addition, two characters (pleotelson and paraeopods 4) differed in shape between guarding males and non-guarding males, with the latter being closer in shape to females. This suggests that sexual selection may be partly responsible for the observed morphological divergence between sexes in A. aquaticus .  © 2002 The Linnean Society of London, Biological Society of the Linnean Society , 2002, 77 , 523–533.