Profiling of selected indigenous rice (Oryza sativa L.) landraces of Rarh Bengal in relation to osmotic stress tolerance

A total of ten rare indigenous rice landraces of West Bengal were screened for germination potential and seedling growth under varying concentrations of sodium chloride (NaCl) and polyethylene glycol (PEG) solutions as osmotic stress inducing agents. Among the studied rice landraces Kelas and Bhut Moori showed highest degree of tolerance to induced osmotic stresses. Proline content of the studied lines was also determined. Genetic relationship among the studied rice landraces was assessed with 22 previously reported osmotic stress tolerance linked Simple Sequence Repeat (SSR) markers. The identified allelic variants in form of amplified products size (molecular weight) for each SSR marker were documented to find out allele mining set for the linked markers of the studied genotypes in relation to osmotic stress tolerance. A Microsatellite Panel was constructed for the different allelic forms (size of amplified products) of each used marker. Among 22 SSR markers, ten showed unique alleles in form of single specific amplified product for the studied four genotypes which can be used for varietal identification. Genetic relationship among the studied rice lines was determined and a dendrogram was constructed to reveal their genetic inter-relationship. Polymorphism Information Content (PIC) for each used marker was also calculated for the studied rice lines.     

Population suppression of Bemisia tabaci (Hemiptera: Aleyrodidae) using yellow sticky traps and Eretmocerus nr. rajasthanicus (Hymenoptera: Aphelinidae) on tomato plants in greenhouses

We conducted three experiments for management of Bemisia tabaci (Gennadius) biotype ‘B’ on tomatoes under greenhouse conditions: (i) vertically placing yellow sticky cards either parallel or perpendicular to tomato rows at a rate of 1 per 3‐m row; (ii) releasing Eretmocerus sp. nr. rajasthanicus once at 30 adults/m² in the high whitefly density greenhouses (> 10 adults/plant), or twice at 15 adults/m² at a 5‐day interval in the low whitefly density greenhouses (< 10 adults/plant); and (iii) using combinations of yellow sticky cards that were placed vertically parallel to tomato rows and parasitoids released once at 30/m² in high whitefly density greenhouses or twice at 15/m² at a 5‐day interval in low whitefly density greenhouses. Our data show that yellow sticky cards trapped B. tabaci adults and significantly reduced whitefly populations on tomato. The yellow sticky cards that were placed parallel to tomato rows caught significantly more whitefly adults than those placed perpendicular to tomato rows on every sampling date. In the treatment where parasitoids were released once at 30/m² in high whitefly density greenhouses, the number of live whitefly nymphs were reduced from 4.6/leaf to 2.9/leaf in 40 days as compared with those on untreated plants on which live whitefly nymphs increased from 4.4/leaf to 8.9/leaf. In the treatment where parasitoids were released twice at 15/m² in low whitefly density greenhouses, the numbers of live nymphs of B. tabaci on tomato leaves were reduced from 2.1/leaf to 1.7/leaf in 20 days as compared with those on untreated plants on which numbers of live nymphs of B. tabaci increased from 2.2/leaf to 4.5/leaf. In the treatment of yellow sticky cards and parasitoid release once at 30/m² in high whitefly density greenhouses, the numbers of live nymphs of B. tabaci on tomato leaves were reduced from 7.2/leaf to 1.9/leaf, and in the treatment of yellow sticky cards and parasitoid release twice at 15/m² at a 5‐day interval at low whitefly density, the numbers of live nymphs of B. tabaci on tomato leaves were reduced from 2.5/leaf to 0.8/leaf; whereas the numbers of live nymphs of B. tabaci on untreated plants increased from 4.4/leaf to 8.9/leaf. An integrated program for management of B. tabaci on greenhouse vegetables by using yellow sticky cards, parasitoids and biorational insecticides is discussed.     

The effect of replicate number and image analysis method on sweetpotato [Ipomoea batatas (L.) Lam.] cDNA microarray results

Microarray analysis makes it possible to determine the relative expression of thousands of genes simultaneously. It has gained popularity at a rapid rate, but many caveats remain. In an effort to establish reliable microarray protocols for sweetpotato [Ipomoea batatas (L.) Lam.], we compared the effect of replication number and image analysis software with results obtained by quantitative rela-time PCR (Q-RT-PCR). Sweetpotato storage root development is the most economically important process in sweetpotato. In order to identify genes that may play a role in this process, RNA for microarray analysis was extracted from sweetpotato fibrous and storage roots. Four data sets, Spot4, Spot6, Finder4 and Finder6, were created using 4 or 6 replications, and the image analysis software of UCSF Spot or TIGR Spotfinder were used for spot detection and quantification. The ability of these methods to identify significant differential expression between treatments was investigated. The data sets with 6 replications were better at identifying genes with significant differential expression than the ones of 4 replications. Furthermore when using 6 replicates, UCSF Spot was superior to TIGR Spotfinder in identifying genes differentially expressed (18 out of 19) based on Q-RT-PCR. Our study shows the importance of proper replication number and image analysis for microarray studies.     

减氮运筹对甘薯光合作用和叶绿素荧光特性的影响

光合性能是决定作物产量形成的关键,氮肥的合理施用是调控作物光合特性和产量形成的重要措施.于2016—2017年开展盆栽试验,研究了减氮和施肥方式对甘薯叶片光合作用和叶绿素荧光特性的影响.试验以常规习惯基施氮肥100 kg·hm^-2为对照(FP),在常规施氮量的基础上减氮20%,同时设置3种氮肥运筹方式:100%基施(JS)、100%移栽后35 d追施(KS)、50%基施+50%移栽后35 d追施(FS).结果表明:与常规基施氮肥100 kg·hm^-2相比,减氮条件下氮肥全部基施显著降低了全生育期甘薯光合性能,但追施处理显著提高了块根膨大期净光合速率(P_n)、气孔导度(g_s)、胞间CO₂浓度(C_i)和叶绿素(Chl a+b)含量.不同处理下,P_n、g_s、C_i和Chl a+b均以50%基施+50%追施处理最高.减氮分施处理甘薯块根膨大期的PSⅡ实际光化学效率(Φ_PSⅡ)、光化学淬灭系数(q_P)、PSⅡ最大光化学效率(F_v/F_m)和PSⅡ潜在活性(F_v/F_o) 提高,而初始荧光(F_o)和非光化学淬灭系数(NPQ)则降低.氮肥分施通过提高PSⅡ的光化学效率和电子传递速率,降低光能的热耗散,提高了甘薯块根膨大期功能叶的光合速率.2个品种不同年际间表现相同.表明氮肥一次性基施或追施均不利于提高甘薯叶片光合性能.减氮20%水平下,50%基施+50%追施可减缓叶片早衰,延长叶片功能期,提高甘薯的光合生产能力和生物量,有利于产量形成.     

Cultivar‐specific effects of pathogen testing on storage root yield of sweetpotato,Ipomoea batatas

The accumulation and perpetuation of viral pathogens over generations of clonal propagation in crop species such as sweetpotato, Ipomoea batatas, inevitably result in a reduction in crop yield and quality. This study was conducted at Bundaberg, Australia to compare the productivity of field‐derived and pathogen‐tested (PT) clones of 14 sweetpotato cultivars and the yield benefits of using healthy planting materials. The field‐derived clonal materials were exposed to the endemic viruses, while the PT clones were subjected to thermotherapy and meristem‐tip culture to eliminate viral pathogens. The plants were indexed for viruses using nitrocellulose membrane‐enzyme‐linked immunosorbent assay and graft‐inoculations onto Ipomoea setosa. A net benefit of 38% in storage root yield was realised from using PT materials in this study. Conversely, in a similar study previously conducted at Kerevat, Papua New Guinea (PNG), a net deficit of 36% was realised. This reinforced our finding that the response to pathogen testing was cultivar dependent and that the PNG cultivars in these studies generally exhibited increased tolerance to the endemic viruses present at the respective trial sites as manifested in their lack of response from the use of PT clones. They may be useful sources for future resistance breeding efforts. Nonetheless, the potential economic gain from using PT stocks necessitates the use of pathogen testing on virus‐susceptible commercial cultivars.     

黄河三角洲盐碱地条件下不同甘薯品种耐盐性

利用北方薯区当前生产上广泛种植的甘薯新品种,在黄河三角洲盐碱地上开展种植试验,以期选育耐盐甘薯品种。对每个测试品种的重要农艺性状及盐离子含量进行分析。结果表明不同甘薯品种的耐盐性存在差异。除叶片数、分枝数、分枝长度无显著性差异外,其他农艺性状如总鲜重、鲜薯产量、薯块干率、薯干产量、薯块数等都在不同品种中达到显著水平,建议耐盐性的评价指标应以鲜薯和薯干产量为主。对甘薯新生叶片、成熟叶片、须根、块根等不同器官进行Cl-、Ca2＋、Na＋和K＋的含量分析,结果表明不同品种其不同器官中各种盐离子含量差异显著,暗示不同基因型耐盐机制存在差异。基于对鲜薯和薯干产量的比较,筛选出耐盐碱的品种,主要有‘泰中9号’、‘苏薯7号’、‘龙薯1号’、‘徐薯18’等。同时,对甘薯种植前后的土壤总盐分和营养成分的分析显示：甘薯收获后,土壤中的含盐量显著降低。本研究为沿海滩涂培育和种植耐盐碱甘薯新品种进行了有益的尝试,同时也为盐碱地改良和生物质能原材料种植提供了思路。     

新疆冬春麦区小麦地方品种贮藏蛋白遗传多样性研究

采用SDS-聚丙烯酰胺凝胶电泳（SDS-PAGE）对236份新疆小麦地方品种的高分子量麦谷蛋白亚基（HMW-GS）的组成进行了分析。结果表明：Glu-Ⅰ位点共有19种等位基因,其中Glu-Al位点3种,Glu-Bl位点7种,Glu—D1住点9种;亚基null、7＋8、2＋12在各自的位点上出现频率最高,分别达到91．95％、85．17％、80．93％;亚基组成类型共有21种,主要为null／7＋8／2＋12,频率达70．34％;同时筛选出33份含有1、2^＊、13＋16、14＋15、5＋10、1．5＋10、174-18等优质亚基的材料,可作为优质基因源。利用酸性聚丙烯酰胺凝胶电泳（A-PAGE）对其中的65份地方品种进行醇溶蛋白多样性分析。结果表明：电泳出现64条迁移率不同的谱带,构成65种组合,其中ω区出现的谱带最多,达17条;其次是β和γ区各16条,α区出现的谱带数最少,为15条。从每条谱带在65份材料中出现的频率看,总的变异范围为1．54％～93．85％;α、β、γ和ω4个分区多样性指数（H1）分别为0．498、0．386、0．523和0．348,表明新疆麦区小麦地方品种贮藏蛋白位点存在丰富的遗传多样性。     

A new agenda for blue agave landraces: food,energy and tequila

Agave tequilana Weber (Rigidae, Agavaceae), blue agave, is a native Mexican plant that has been associated with tequila since the 17th century. The tequila industry has matured over time and now has a geographical indication (Denominación de Origen; DOT). The tequila industry has grown substantially in the last 15 years (19.82% annual increase between 1995 and 2008), resulting in an increase in agave production and associated residue (leaves) and bagasse that can be used for second‐generation biofuels. At a time when the biofuel industry is undergoing unprecedented changes, with diversified demand and predictions of increased competitiveness, this paper presents a review of agave landraces that have been affected by tequila production but may be beneficial for a biofuel industry. Conventional botanical studies have revealed domestication syndromes in races related to blue agave (‘azul listado’, ‘sigüín’ and ‘pata de mula’) specifically for production of fructans in the plant core as would be expected in mezcal agaves (including those used for tequila). Some others, such as the ‘moraleño’ and ‘bermejo’ cultivars (Sisalanae) show domestication syndrome only in the fibers, while others, such as ‘chato,’A. americana L. subtilis (Americanae) show domestication syndrome in fructans and fibers and ‘zopilote,’A. rhodacantha (Rigidae) a relatively low domestication syndrome. No specimens of the cultivars named ‘mano larga’, ‘mano anchaque’ and ‘cucharo’ were found in the Tequila Region of Origin (Western Mexico). The genetic resources from landraces ignored by the tequila industry may be valuable for both ethanol production and conservation.     

同名小麦地方品种小红芒和小红芒麦形态学和HMW-GS组成的演变分析

为了研究来自不同麦区的61份同名小麦地方品种小红芒和6份小红芒麦的遗传演变趋势,对与6个产量相关的农艺性状和高分子量麦谷蛋白亚基(high molecular weight glutenin subunits,HMW-GS)组成的变异进行了分析.结果表明,无论是在形态学水平还是蛋白质水平,小红芒和小红芒麦均存在丰富的遗传变异.在形态学水平上,供试材料的变异系数在株高、稳长、有效分蘖数、小穗数、穗粒数和千粒重等农艺性状上的变化范围分别为0.03～0.11、0.06～0.22、0.20～0.65、0.04～0.18、0.14～0.44和0.05～0.29.通过形态学数据计算小红芒和小红芒麦品种内多样性指数和品种间多样性指数,发现前者(0.804)占总多样性指数(0.842)的95.5%,而后者仅占4.5%,可见形态学变异主要来源于品种内而非品种闻,说明这些同名材料是由一个品种演变而来.在HMW-GS组成上,共发现了20种亚基组合类型,其中null,7+8,2+12和null,7+8,2+102种亚基组合出现的频率最高,分别为64.48%和20.00%.比较不同麦区种植的小红芒和小红芒麦的遗传多样性水平,发现无论是在形态学水平还是在蛋白质水平,春麦区材料的遗传多样性均普遍高于冬麦区,并且来自西北春麦区和北部春麦区的材料不仅遗传多样性较高,而且变异来源丰富,其中来自西北春麦区的甘肃天祝一带材料多样性最高,且其所处地理位置便于农作物的传播,故甘肃天祝地区有可能是小红芒的最初种植地点,然后再引种到其他种植区.     

基于农艺性状指标的山西高粱地方品种核心种质构建

利用1285份山西省高粱地方品种18个农艺性状的历史数据,通过比较不同取样方法、取样比例和聚类方法组合的构建方法,确定了“多次聚类偏离度取样法+15%取样比例+欧氏距离+最长距离法”为山西省高粱地方核心种质构建的方法。192份初选核心种质和所有样本的均值差异百分率、方差差异百分率、极差符合率和变异系数变化率分别为0、83.33%、97.45%和119.63%。同时,在此基础上补充选择6个具有特殊性状但未选入的种质资源,最终确定198份高粱资源组成山西省高粱地方品种核心种质,取样量为15.4%。经核心种质和所有样本不同性状的均值t测验、极值和标准差比较、遗传多样性指数的t值检验以及主成分分析,最终得出核心种质的198份高粱资源能够代表山西省高粱地方品种的遗传多样性,为山西省高粱地方品种评价和利用提供了优先样本。