Shifting abundances of communities associated with nitrogen cycling in soils promoted by sugarcane harvest systems

Sugarcane cultivation supports Brazil as one of the largest world sugar and ethanol producer. In order to understand the impact of changing sugarcane harvest from manual to mechanized harvest, we studied the effect of machinery traffic on soil and consequently soil compaction upon soil microbial communities involved in nitrogen cycling. The impact of sugarcane harvest was dependent on soil depth and texture. At deeper soil layers, mechanized harvesting increases the abundance of nitrogen fixers and denitrifying communities (specifically nosZ clade I and II) while manual harvesting increases the abundance of ammonia oxidizers (specifically AOA) and increases denitrifying communities (nosZ clade I and II) on top and at intermediate depth. The effect of change on the harvest system is more evident on sandy soil than on clay soil, where soil indicators of compaction (bulk density and penetration resistance) were negatively correlated with soil microorganisms associated with the nitrogen cycle. Our results point to connections between soil compaction and N transformations in sugarcane fields, besides naming biological variables to be used as proxies for alterations in soil structure.     

Natural occurrence of Gibberella fujikuroi and its potential for control of the woolly aphid Ceratovacuna lanigera (Homoptera: Aphididae) in Indian sugarcane plantations

Studies were conducted to determine the natural occurrence of entomopathogenic fungi and their potential for utilisation in biological control of the woolly aphid (Ceratovacuna lanigera Zehntner) in Indian sugarcane plantations. A fungus Gibberella fujikuroi (Sawada) Wr. (Synonym: Fusarium verticillioides (Sacc.) Nirenberg, Synonym: Fusarium moniliforme (Sheld.) emend. Snyd. and Hans.) was found to be a promising biocontrol agent. It was further characterised and its field performance was studied. Reductions of aphid populations up to 60% were observed when the fungus was applied as two sprays at a week interval in the field.     

Sugarcane mosaic virus in plantlets regenerated from diseased leaf tissue

Plantlets produced from sugarcane leaf tissue were examined to determine the effect of propagation on the frequency of occurrence of sugarcane mosaic virus (SCMV).Explants from immature leaf tissues of the sugarcane variety CP 72-356 (Saccharum interspecific hybrid), healthy or SCMV-infected, were cultured on Murashige-Skoog medium to which a combination of cytokinin and auxin had been added. Plantlets developed on healthy and infected leaf tissue within 6 weeks. The juice from plantlets was assayed for SCMV on Rio sorghum (Sorghum bicolor (L.) Moench, var. Rio) seedlings and on sugarcane varieties CP 31-294 and CO 31-588 for SCMV-strain identification. Results indicated that SCMV strain H was transmitted from the donor tissue to the regenerated plantlets. Observation on plantlets reared in the greenhouse showed that 23% had symptoms of SCMV. In a second replicated experiment, the leaf tissue from plants of POJ 234 free of mosaic or infected with SCMV strain A, B, D, H, or I was cultured. Each of the five strains was transmitted from donor to plantlet as indicated by assays on sorghum and sugarcane varieties. From 11 to 88% of the plantlets had mosaic symptoms, depending on the strain infecting the donor plant. In this experiment, SCMV-strain M was transmitted from an unidentified donor variety to 23% of the regenerated plantlets.Portions of this paper have been presented to the American Society of Sugar Cane Technologists, at the meeting in Clearwater, Florida in June, 1984.     

Role of plant parasitic nematodes and abiotic soil factors in growth heterogeneity of sugarcane on a sandy soil in South Africa

A feature of many sugarcane fields is the patchy growth. This is often thought to be due to physical or chemical differences in the soil. In this paper we investigate the causes of growth heterogeneity of sugarcane on a sandy soil in KwaZulu-Natal, South Africa. To identify the factors that were associated with the good and poor areas, soil texture, pH, organic matter content and a number of soil chemical elements and nematode community data were subjected to principal component analysis (PCA). The numbers of each of the nematode species (Meloidogyne sp., Pratylenchus zeae, Helicotylenchus dihystera, Xiphinema elongatum and Paratrichodorus sp.) were first converted to relative proportions of ectoparasites and endoparasites. The data were collected from the 2nd ratoon crop of a nematicide trial, where half of the plots had been treated with aldicarb in the preceding two crops. Yields of control plots varied from 34.7 to 126.8 t cane ha^–1 and from 85.4 to 138.7 for the treated plots. The yield data were centred and normalised separately for the treated and control plots and the values projected on the trial map to study spatial distribution. Plots with above-average yields, whether treated or untreated, occurred in the lower part of the trial site. The PCA factorial values were also projected onto the map of the trial. According to the first factor of the analysis of the abiotic soil characteristics in the 0–20 cm surface layer, the trial site could be divided into two areas, one on the left and one on the right. PCA of the soil data from the 0–20 and 20–40 cm layers showed that there was little or no difference between the two that might explain the two growth areas. However, analysis of the nematode community distinguished two main areas that largely corresponded to the distribution of the plots of low and high yielding cane. Correlation analysis confirmed the relationship between nematodes and yield. H. dihystera was positively correlated with yield of cane whereas the reverse was true for the Meloidogyne species.     

不同基因型甘蔗种质资源的表型遗传多样性

为探明甘蔗原种和地方种的遗传多样性和亲缘关系,以期筛选出优良甘蔗种质和优良杂交亲本.该研究对18份甘蔗原种和地方种的14个数量性状进行了表型遗传多样性分析.结果表明：通过14个数量性状的变异系数(coefficient of variance,CV)和性状之间的相关分析,18份甘蔗原种和地方种的数量性状遗传变异主要来自甘蔗蔗糖分、单茎重、叶宽、茎径和纤维分;对14个数量性状进行主成分分析提取获得了4个主成分因子,分别命名为“品质因子”、“生长因子”、“成熟度因子”和“光合因子”,主成分因子累积贡献率达83．482％;进一步通过对主成分因子开展综合评价分析,获得数量性状综合表型高于平均水平的10份材料,依次为 Sampana→甜圪塔→合庆草甘蔗→桂林竹蔗→坦桑尼亚→芒戈→古芝蔗→大岛再来→托江红→春尼;聚类分析基于不同的遗传距离可将18份种质聚为5个类别,潜在的优良杂交组合是 Sampana 和甜圪塔或 Sampana 和合庆草甘蔗,表明在甘蔗遗传育种亲本选择上既要考虑各性状主要因子的互补,又要保持一定的遗传距离.该研究认为,在甘蔗育种工作中,利用因子分析法进行表型遗传多样性分析,将更加有助于亲本和杂交组合的选择.     

Cloning,expression, molecular modelling and docking analysis of glutathione transferase from Saccharum officinarum

Sugarcane yield and quality are affected by a number of biotic and abiotic stresses. In response to such stresses, plants may increase the activities of some enzymes such as glutathione transferase (GST), which are involved in the detoxification of xenobiotics. Thus, a sugarcane GST was modelled and molecular docked using the program LIGIN to investigate the contributions of the active site residues towards the binding of reduced glutathione (GSH) and 1‐chloro‐2,4‐dinitrobenzene (CDNB). As a result, W13 and I119 were identified as key residues for the specificity of sugarcane GSTF1 (SoGSTF1) towards CDNB. To obtain a better understanding of the catalytic specificity of sugarcane GST (SoGSTF1), two mutants were designed, W13L and I119F. Tertiary structure models and the same docking procedure were performed to explain the interactions between sugarcane GSTs with GSH and CDNB. An electron‐sharing network for GSH interaction was also proposed. The SoGSTF1 and the mutated gene constructions were cloned and expressed in Escherichia coli and the expressed protein purified. Kinetic analyses revealed different K_m values not only for CDNB, but also for GSH. The K_m values were 0.2, 1.3 and 0.3 mM for GSH, and 0.9, 1.2 and 0.5 mM for CDNB, for the wild type, W13L mutant and I119F mutant, respectively. The V_max values were 297.6, 224.5 and 171.8 µmol min^?1 mg^?1 protein for GSH, and 372.3, 170.6 and 160.4 µmol min^?1 mg^?1 protein for CDNB.     

Bioethanol production from sugarcane and emissions of greenhouse gases – known and unknowns

Bioethanol production from sugarcane is discussed as an alternative energy source to reduce dependencies of regional economies on fossil fuels. Even though bioethanol production from sugarcane is considered to be a beneficial and cost‐effective greenhouse gas (GHG) mitigation strategy, it is still a matter of controversy due to insufficient information on the total GHG balance of this system. Aside from the necessity to account for the impact of land use change (LUC), soil N₂O emissions during sugarcane production and emissions of GHG due to preharvest burning may significantly impact the GHG balance. Based on a thorough literature review, we show that direct N₂O emissions from sugarcane fields due to nitrogen (N) fertilization result in an emission factor of 3.87±1.16% which is much higher than suggested by IPCC (1%). N₂O emissions from N fertilization accounted for 40% of the total GHG emissions from ethanol–sugarcane production, with an additional 17% from trash burning. If LUC‐related GHG emissions are considered, the total GHG balance turns negative mainly due to vegetation carbon losses. Our study also shows that major gaps in knowledge still exist about GHG sources related to agricultural management during sugarcane production, e.g. effects of irrigation, vinasse and filter cake application. Therefore, more studies are needed to assess if bioethanol from sugarcane is a viable option to reduce energy‐related GHG emissions.     

甘蔗联合固氮的研究进展及应用潜力

在农业生产中,化学氮肥的投入大幅度增加了粮食产量,然而过量或不合理的施肥措施对农业生态环境造成了严重破坏。因此,挖掘植物自身的生物学特性,寻求其他有效的氮素来源,对农业减肥增效至关重要。其中,植物与微生物之间的生物固氮作用,能为宿主提供大量的清洁氮源,在农业生产中发挥着不可替代的作用。本文以甘蔗为代表,综述了植物联合固氮的研究进展和应用潜力,包括联合固氮作用的提出、联合固氮菌的筛选、侵染机制及功能研究,并总结了联合固氮复合菌在甘蔗生产中的应用,以期为作物养分高效的品种改良及推动生物固氮作用在农业生产中的实践提供理论依据和参考。