Structural Basis for Silicic Acid Uptake by Higher Plants

Many of the world's most important food crops such as rice, barley and maize accumulate silicon (Si) to high levels, resulting in better plant growth and crop yields. The first step in Si accumulation is the uptake of silicic acid by the roots, a process mediated by the structurally uncharacterised NIP subfamily of aquaporins, also named metalloid porins. Here, we present the X-ray crystal structure of the archetypal NIP family member from Oryza sativa (OsNIP2;1). The OsNIP2;1 channel is closed in the crystal structure by the cytoplasmic loop D, which is known to regulate channel opening in classical plant aquaporins. The structure further reveals a novel, five-residue extracellular selectivity filter with a large diameter. Unbiased molecular dynamics simulations show a rapid opening of the channel and visualise how silicic acid interacts with the selectivity filter prior to transmembrane diffusion. Our results will enable detailed structure–function studies of metalloid porins, including the basis of their substrate selectivity.     

Influence of nutrition on disease development caused by fungal pathogens: implications for plant disease control

A great deal of information is available in the literature on the effects of nutrition on disease development in plants and crops. However, much of this information is contradictory and although it is widely recognised that nutrition can influence disease in crops, limited progress has been made in the manipulation of crop nutrition to enhance disease control. Achieving this aim requires a sound understanding of the effects of fertilisation on nutrient levels and availability in crop tissues, and in turn, how the nutrient status of such tissues influences pathogen infection, colonisation and sporulation. Some of these details are known for a number of crop plants under controlled conditions, but very little of this type of information is available for crops under field conditions. This review focuses on nitrogen, sulphur, phosphorus, potassium and silicon, examines the availability of these nutrients in plant tissues to support pathogen growth and development, and reviews the effects of the different nutrients on disease development. The review also examines the potential for manipulating crop nutrition to enhance disease control in conventional and organic cropping systems.     

Effect of foliar‐applied potassium silicate on coffee leaf infection by Hemileia vastatrix

Coffee leaf rust, caused by Hemileia vastatrix, is the most devastating disease of coffee. Since limited information is available in the literature on silicon (Si) affecting plant diseases in coffee, this study was designed to investigate foliar application of potassium silicate (PS), a source of soluble (Si), on infection process of coffee leaf rust at the microscopic level. The foliar Si concentration for plants sprayed with water and PS has no significant difference (0.24 and 0.30 dag kg^?1, respectively). X‐ray microanalysis indicated that the deposition of Si on the leaves of the plants that were sprayed with PS was greater in comparison to the leaf samples from the plants sprayed with water. Rust severity on leaves of plants sprayed with water or sprayed with PS reached 44% and 32%, respectively, at 36 days after inoculation (dai). Plates of polymerised PS were observed on the leaf surfaces of the plants sprayed with the product, in contrast to its absence on the leaf surfaces of plants sprayed with water. At 36 dai, a greater number of uredia were observed on the leaf surfaces of plants sprayed with water in comparison to the leaf surfaces of plants sprayed with PS. On fractured leaf tissues that were sprayed with PS, less fungal colonisation was observed in comparison to the leaves of plants sprayed with water. In conclusion, the results of this study suggest that the effect of foliar‐applied Si on the control of the coffee leaf rust development may be attributed to the physical role of the polymerised PS, its osmotic effect against urediniospores germination, or both.     

Cell Patterning on Photolithographically Defined Parylene-C: SiO2 Substrates

Cell patterning platforms support broad research goals, such as construction of predefined in vitro neuronal networks and the exploration of certain central aspects of cellular physiology. To easily combine cell patterning with Multi-Electrode Arrays (MEAs) and silicon-based ‘lab on a chip’ technologies, a microfabrication-compatible protocol is required. We describe a method that utilizes deposition of the polymer parylene-C on SiO₂ wafers. Photolithography enables accurate and reliable patterning of parylene-C at micron-level resolution. Subsequent activation by immersion in fetal bovine serum (or another specific activation solution) results in a substrate in which cultured cells adhere to, or are repulsed by, parylene or SiO₂ regions respectively. This technique has allowed patterning of a broad range of cell types (including primary murine hippocampal cells, HEK 293 cell line, human neuron-like teratocarcinoma cell line, primary murine cerebellar granule cells, and primary human glioma-derived stem-like cells). Interestingly, however, the platform is not universal; reflecting the importance of cell-specific adhesion molecules. This cell patterning process is cost effective, reliable, and importantly can be incorporated into standard microfabrication (chip manufacturing) protocols, paving the way for integration of microelectronic technology.     

The action of excessive,inorganic silicon (Si) on the mineral metabolism of calcium (Ca) and magnesium (Mg)

The influence of silicon treatment on the levels of calcium and magnesium in blood serum and tissues was studied in rats. The concentrations of both elements were estimated in samples of sera and tissues of rats receiving per os a soluble, inorganic silicon compound—sodium metasilicate nonahydrate (Na₂SiO₃·9H₂O (REACHIM, USSR)), dissolved in the animals' drinking water. A decrease of magnesium concentration in serum was observed with accompanying elevation of registered calcemia. Moreover, a reduction of tissue calcium levels was found with a simultaneous increase of magnesium tissue pool. The results provide evidence for silicon involvement in mineral metabolism. It could result in a modification of pathological processes concerning bone tissue.     

Advances in alternative DNA delivery techniques

This review describes recent advances in alternative DNA-delivery techniques with particular emphasis on silicon carbide fibers, intact tissue electroporation, electrophoresis and microinjection. The advantages/disadvantages of each method along with a historical overview and theory of practice are discussed.     

Fungal Deterioration of Barrier Concrete used in Nuclear Waste Disposal

Fungal biogeochemical activity over a long-term scale may have negative environmental consequences for the management of barrier materials used in nuclear waste disposal. Fungal deterioration of barrier concrete was studied in microcosms simulating a heterogeneous environment with an external source of nutrients for the fungi. Fungi successfully colonized barrier concrete, generally avoiding granite aggregates, and biochemically (by excretion of protons and ligands) and biomechanically deteriorated the concrete. Fungi dissolved the cement matrix leaching structural elements and accumulating them within the fungal biofilm and associated microenvironment. Oxalate-excreting Aspergillus niger formed abundant calcium oxalate crystals on the concrete and encrusting fungal hyphae.     

Enhancement of the Amazonian Açaí Waste Fibers through Variations of Alkali Pretreatment Parameters

The açaí fruit depulping produces large amounts of long lignocellulosic fiber bundles that are disposed in the environment. Chemical pretreatments may improve açaí fibers favoring their usage in advanced materials. This work aimed to define optimal alkali reaction parameters to improve the properties of açaí fibers. Two NaOH concentrations (5 % and 10 %) and two reaction temperatures (80 °C and 100 °C) were tested. The raw and treated fibers were analyzed by scanning electron microscopy, Fourier transformed infrared spectroscopy, X‐ray diffraction, and thermal analyses. All the alkali pretreatments separated fibers from the bundles, unblocked pit channels by removing silicon structures, exposed the inner lignin, partially removed non‐cellulosic compounds, and raised the cellulose crystalline index. The highest temperature and NaOH content resulted in better cleaning and isolation of the fibers, while milder conditions better preserved the cellulose crystalline structure and thermal stability.     

Phytolith‐rich biochar: A potential Si fertilizer in desilicated soils

Silicon (Si) is beneficial to plants since it increases photosynthetic efficiency, and alleviates biotic and abiotic stresses. In the most highly weathered and desilicated soils, plant phytoliths make up the reservoir of bioavailable Si. The regular removal of crop residues, however, substantially decreases this pool. Si supply may therefore be required to sustain continuous cropping. Available Si fertilizers are costly and usually poor in soluble Si. Biochar produced from the pyrolysis of phytolith‐rich biomass is thus a promising alternative Si source for plants. Taking into account the challenges of increasing food demand and environmental concerns, we evaluate the global potential of biochar produced from major crop residues and manures in terms of phytogenic Si (PhSi) supply. Crop residues contribute to 80% of the global production of biomass dry matter (8,201 Tg/year) of which 3,137 Tg/year are potentially available after pyrolysis, giving a potential application rate of 1.7 T ha^?1 year^?1 for highly weathered soils in the tropics. The potential PhSi supply from crop biochar amounts to 102 Tg Si/year. On its own, rice straws produce 57.7 Tg PhSi/year, accounting for 56.6% of the potential annual PhSi production. The Si release from crop biochar depends on inter altere feedstock type, pyrolysis temperature, soil pH, and buffer capacity. Furthermore, the amplitude of plant Si uptake and mineralomass depends on plant species, soil properties, and processes. These factors interact and can exert a decisive influence on the effectiveness of phytolithic biochar in releasing Si into highly weathered soils. We conclude that the use of phytolithic biochar as a Si fertilizer offers undeniable potential to mitigate desilication and to enhance Si ecological services due to soil weathering and biomass removal. This potential must be explored, as well as the conditions for using biochar in the field.