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目的:针对下一代测序数据量大、序列长度短的特点,研究数据分析和质量评估方法。方法:选择已发布的Illumina-Solexa平台测序数据为研究对象,通过MAQ软件将测序数据与人类全基因组序列进行比对,并以外显子区域为例,在位点水平对测序数据质量进行评估。结果:结合已有软件系统和本文自创线性算法,建立了一套包括比对、拼接在内的测序数据质量评估系统。比对分析后,发现原始测序序列共覆盖了127,113,378个位点,涉及24条染色体上的64868个外显子。其中,每个位点都被测到的外显子为0.50%,位点平均测序深度大于等于1的外显子为3.98%。结论:成功构建了基于Illumina-Solexa测序平台的数据分析和质量评估方法,其可适用于其它第二代测序平台。研究者可在质量评估的基础上完善测序试验设计,并进行SNP和突变筛选及后续功能性研究。 相似文献
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Luca Basilone 《Facies》2009,55(1):115-135
The Rocca Busambra ridge in western Sicily is a shallow to pelagic Meso-Cenozoic carbonate structural unit of the Sicilian
Chain with a variety of tectono-sedimentary features. Palaeofaults, unconformities (buttress unconformity, onlap, downlap),
a network of neptunian dykes with several infilling generations, several large hiatuses, different facies and lateral facies
changes, and erosional submarine and subaerial surfaces are observed. Detailed fieldwork and structural analyses have indicated
the occurrence of fault planes with different orientations. These data, combined with facies studies and physical-stratigraphy
analyses, allow for the distinction of different depositional regions. A lateral change from an open-marine carbonate platform
with a stepped fault margin (located in the westernmost sector) to a deeper basinal depositional setting in the east, in the
context of an upper slope scalloped margin and base-of-slope systems with talus breccias, is envisaged here. Extensional to
transtensional tectonic pulses punctuated the sedimentary evolution during Early Toarcian, Late Jurassic, Early Cretaceous,
Late Cretaceous, and Early Miocene times. The collected data show that most fault planes have preserved their original orientations
throughout the reactivation processes. The reconstructed Meso-Cenozoic tectono-sedimentary evolution is closely related to
the late syn-rift and post-rift tectonic evolution of the Tethyan continental margin. 相似文献
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Imre Berger Frederic Garzoni Maxime Chaillet Matthias Haffke Kapil Gupta Alice Aubert 《Journal of visualized experiments : JoVE》2013,(77)
Proteomics research revealed the impressive complexity of eukaryotic proteomes in unprecedented detail. It is now a commonly accepted notion that proteins in cells mostly exist not as isolated entities but exert their biological activity in association with many other proteins, in humans ten or more, forming assembly lines in the cell for most if not all vital functions.1,2 Knowledge of the function and architecture of these multiprotein assemblies requires their provision in superior quality and sufficient quantity for detailed analysis. The paucity of many protein complexes in cells, in particular in eukaryotes, prohibits their extraction from native sources, and necessitates recombinant production. The baculovirus expression vector system (BEVS) has proven to be particularly useful for producing eukaryotic proteins, the activity of which often relies on post-translational processing that other commonly used expression systems often cannot support.3 BEVS use a recombinant baculovirus into which the gene of interest was inserted to infect insect cell cultures which in turn produce the protein of choice. MultiBac is a BEVS that has been particularly tailored for the production of eukaryotic protein complexes that contain many subunits.4 A vital prerequisite for efficient production of proteins and their complexes are robust protocols for all steps involved in an expression experiment that ideally can be implemented as standard operating procedures (SOPs) and followed also by non-specialist users with comparative ease. The MultiBac platform at the European Molecular Biology Laboratory (EMBL) uses SOPs for all steps involved in a multiprotein complex expression experiment, starting from insertion of the genes into an engineered baculoviral genome optimized for heterologous protein production properties to small-scale analysis of the protein specimens produced.5-8 The platform is installed in an open-access mode at EMBL Grenoble and has supported many scientists from academia and industry to accelerate protein complex research projects. 相似文献
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μ型阿片受体是阿片类药物镇痛与成瘾的分子基础。从人脑组织总RNA通过RTPCR扩增获得μ型阿片受体的cDNA,将其克隆至pcDNA31(+)中,用酶切鉴定正确的重组质粒转染CHO细胞。筛选的单克隆细胞株,检测阳性的细胞克隆表达的μ型阿片受体介导胞内信号转导的能力。通过与激动剂和拮抗剂的信号转导分析证实,阳性的细胞克隆表达的μ型阿片受体与天然的μ型阿片受体具有基本一致的生物学特性,因此可以用来作为高效镇痛低成瘾药物筛选平台的候选细胞株。 相似文献
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David March Lars Boehme Joaquín Tintor Pedro Joaquín Vlez‐Belchi Brendan J. Godley 《Global Change Biology》2020,26(2):586-596
Marine animals are increasingly instrumented with environmental sensors that provide large volumes of oceanographic data. Here, we conduct an innovative and comprehensive global analysis to determine the potential contribution of animal‐borne instruments (ABI) into ocean observing systems (OOSs) and provide a foundation to establish future integrated ocean monitoring programmes. We analyse the current gaps of the long‐term Argo observing system (>1.5 million profiles) and assess its spatial overlap with the distribution of marine animals across eight major species groups (tuna and billfishes, sharks and rays, marine turtles, pinnipeds, cetaceans, sirenians, flying seabirds and penguins). We combine distribution ranges of 183 species and satellite tracking observations from >3,000 animals. Our analyses identify potential areas where ABI could complement OOS. Specifically, ABI have the potential to fill gaps in marginal seas, upwelling areas, the upper 10 m of the water column, shelf regions and polewards of 60° latitude. Our approach provides the global baseline required to plan the integration of ABI into global and regional OOS while integrating conservation and ocean monitoring priorities. 相似文献
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Liver sinusoid on a chip: Long‐term layered co‐culture of primary rat hepatocytes and endothelial cells in microfluidic platforms 下载免费PDF全文
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Yu Gao Jingjing Xie Haijun Chen Songen Gu Rongli Zhao Jingwei Shao Lee Jia 《Biotechnology advances》2014
Traditional chemotherapy used today at clinics is mainly inherited from the thinking and designs made four decades ago when the Cancer War was declared. The potency of those chemotherapy drugs on in-vitro cancer cells is clearly demonstrated at even nanomolar levels. However, due to their non-specific effects in the body on normal tissues, these drugs cause toxicity, deteriorate patient's life quality, weaken the host immunosurveillance system, and result in an irreversible damage to human's own recovery power. Owing to their unique physical and biological properties, nanotechnology-based chemotherapies seem to have an ability to specifically and safely reach tumor foci with enhanced efficacy and low toxicity. Herein, we comprehensively examine the current nanotechnology-based pharmaceutical platforms and strategies for intelligent design of new nanomedicines based on targeted drug delivery system (TDDS) for cancer metastasis treatment, analyze the pros and cons of nanomedicines versus traditional chemotherapy, and evaluate the importance that nanomaterials can bring in to significantly improve cancer metastasis treatment. 相似文献
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