Of beta diversity,variance, evenness,and dissimilarity

The amount of variation in species composition among sampling units or beta diversity has become a primary tool for connecting the spatial structure of species assemblages to ecological processes. Many different measures of beta diversity have been developed. Among them, the total variance in the community composition matrix has been proposed as a single‐number estimate of beta diversity. In this study, I first show that this measure summarizes the compositional variation among sampling units after nonlinear transformation of species abundances. Therefore, it is not always adequate for estimating beta diversity. Next, I propose an alternative approach for calculating beta diversity in which variance is substituted by a weighted measure of concentration (i.e., an inverse measure of evenness). The relationship between this new measure of beta diversity and so‐called multiple‐site dissimilarity measures is also discussed.     

Fusarium oxysporum f. sp. strigae strain Foxy 2 did not achieve biological control of Striga hermonthica parasitizing maize in Western Kenya

The production of maize, a major staple food crop in sub-Saharan Africa is being constrained by the parasitic weed Striga hermonthica. The fungus Fusarium oxysporum f. sp. strigae (Foxy 2) that causes fusarium wilt of Striga in Ghana, West Africa, is being considered for biological control of the weed in Western Kenya. The present study investigated the efficacy of F. oxysporum f. sp. strigae (Foxy 2) for S. hermonthica management in Western Kenya. Research was conducted in post-entry quarantine (PEQ) facilities at Alupe, Busia, Homabay, Kibos and Siaya field stations for two seasons. Each PEQ was a split-plot, with 4 main blocks each having 6 treatment subplots. The treatments included seeds of two S. hermonthica-susceptible maize varieties, either coated with Foxy 2 using gum Arabic, gum Arabic alone, or left untreated. Data was collected over seven sampling periods on S. hermonthica population per plant, percentage of those that were wilting, and the severity of wilting. Maize plant growth parameters assessed included duration to 50% anthesis and 50% silking, plant height, number of leaves, stover and cob weights, and maize yield per hectare. Statistical analysis was done using SAS 9.1 software. Data on S. hermonthica population were analyzed by χ²-test using Proc Genmod (Poisson); while the other parameters were analyzed by Proc Mixed using study location, season and blocks as random effects, and the sampling periods as repeated effects. All the assessed parameters were similar between plants grown from seeds inoculated with F. oxysporum f. sp. strigae (Foxy 2), those coated with gum Arabic, and the ones without any coating. These parameters were also not different between the maize varieties. There are varying reasons for the disparities between results on F. oxysporum f. sp. strigae (Foxy 2) obtained in this Kenyan study, and those from researches outside this country. In conclusion, F. oxysporum f. sp. strigae strain Foxy 2 is predominantly safe on maize growth, but its efficacy in controlling S. hermonthica was not evident on the tested Kenyan soils.     

Providing straw to allow exploratory behaviour in a pig experimental system does not modify putative indicators of positive welfare: peripheral oxytocin and serotonin

Numerous studies have shown that providing straw to pigs can reduce undesirable behaviours such as aggression, tail biting and stereotypy. The measurement of various neuromodulators can be helpful in assessing the development of positive behaviours and overall animal welfare. The oxytocin release is frequently linked to positive emotions and positive welfare. It has been suggested that oxytocin modulates the serotoninergic system. This study aims to investigate the potential effect of straw provision in pigs on peripheral levels of oxytocin and serotonin. In total, 18 mini-pigs were involved in an exploratory study conducted in two parallel groups, Enriched (n=10) and Control (n=8) groups. Pigs were divided by group and housed in pens of two individuals. Straw was provided continuously only in Enriched group and renewed each day for 2 weeks. Two blood samples were drawn from each animal 5 to 10 min before providing the straw, and 15 min after providing straw, during the 1^st week, to analyse peripheral changes in oxytocin and serotonin before and after straw provision, and determine the existence of a putative short-term effect. The same procedure was carried out for Control group, without straw provision. Long-term effects of straw provision were also examined using blood samples drawn at the same hour from each animal in the 2^nd and 3^rd weeks. During this time, animals had the permanent possibility to explore the straw in Enriched group but not in Control group. At the end of each week, one animal-keeper completed two visual analogue scales for each mini-pig regarding the difficulty/ease to work with and handle it and its trust in humans. Results showed peripheral oxytocin increases in both groups after 2 weeks (P=0.02). Results did not demonstrate any effect of providing straw to allow exploratory behaviour on peripheral serotonin. Other results were not significant. This preliminary study explored the relationship between peripheral oxytocin and serotonin and the presence of straw that allow pigs to perform exploratory behaviour, suggesting that there was no relationship between them. Some future studies may include crossing oxytocin and serotonin with other parameters, such as behavioural measures, to obtain more information about the true state of the animal and any possible relationship with pig welfare.     

Bayesian Quantile Regression for Longitudinal Studies with Nonignorable Missing Data

Summary .  We study quantile regression (QR) for longitudinal measurements with nonignorable intermittent missing data and dropout. Compared to conventional mean regression, quantile regression can characterize the entire conditional distribution of the outcome variable, and is more robust to outliers and misspecification of the error distribution. We account for the within-subject correlation by introducing a   ℓ₂   penalty in the usual QR check function to shrink the subject-specific intercepts and slopes toward the common population values. The informative missing data are assumed to be related to the longitudinal outcome process through the shared latent random effects. We assess the performance of the proposed method using simulation studies, and illustrate it with data from a pediatric AIDS clinical trial.     

How icosahedral are icosahedral clusters?

Icosahedral symmetry, not contemplated within the crystallographic space groups, is nevertheless present to a high degree of perfection in a variety of clusters, in molecular, ionic, covalent or metallic structures. The application of continuous shape measures to those structures allows for a quantification of the degree of icosahedral symmetry present in each case, a first necessary step for a deeper discussion of the factors that favor the adoption of the icosahedron as a stable structural motif. Examples analyzed include boranes and carbaboranes, main group, rare earth or transition metal clusters, ligand-bridged polynuclear complexes and sets of donor atoms in mono- or polynuclear complexes. Specific examples are found of structures that appear along the minimal distortion pathways from the icosahedron to the cuboctahedron or the anticuboctahedron.     

The effects of thinning and gypsy moth defoliation on wood volume growth in oaks

Stem dissection and dendroecological methods were used to examine the effects of thinning and defoliation by gypsy moth (Lymantria dispar L.) on wood volume increment in oaks (Quercus rubra L., Q. alba L., Q. prinus L.). A model was developed to evaluate radial volume increment growth at three time periods: before defoliation, during defoliation and after defoliation, as a function of species, defoliation intensity and crown position. Volume increment during these same time periods was also compared at different stem locations. Trees were defoliated for two consecutive years and results indicated that volume loss was greater during the second year of defoliation with complete recovery taking 2–3 years after defoliation. Oaks in thinned stands had similar reductions in annual volume increment during defoliation as those in the unthinned stand. Annual volume increment demonstrated a decreasing trend from stump to base of the live crown and volume increment of the lowest log (from stump height to 1.37 m), was always higher than upper log sections, even during defoliation. Both earlywood and latewood increments were reduced during defoliation; however, latewood reductions were distributed along entire stems while earlywood reductions were greater on upper stem sections within the crown.     

It is better to be ignorant of our moral enhancement: A reply to Zambrano

In a recent issue of Bioethics, I argued that compulsory moral bioenhancement should be administered covertly. Alexander Zambrano has criticized this argument on two fronts. First, contrary to my claim, Zambrano claims that the prevention of ultimate harm by covert moral bioenhancement fails to meet conditions for permissible liberty-restricting public health interventions. Second, contrary to my claim, Zambrano claims that covert moral bioenhancement undermines autonomy to a greater degree than does overt moral bioenhancement. In this paper, I rebut both of these arguments, then finish by noting important avenues of research that Zambrano’s arguments motivate.     

幽门螺杆菌感染并发消化性溃疡的危险因素及预防对策分析

目的:分析幽门螺杆菌感染并发消化性溃疡的危险因素,并实施预防对策。方法:选取我院收治的消化性溃疡的患者201例,对其临床资料进行回顾性分析,分析其危险因素。结果:消化性溃疡患者201例,Hp感染162例,Hp阳性率80.60%,不同类型的消化性溃疡的Hp阳性率比较,差异无统计学意义(P0.05)。单因素分析结果显示,年龄在36-60岁、共食、男性、暴饮暴食、喜爱辛辣食物、吸烟饮酒、个人卫生、家族病史、以往病史,均是消化性溃疡Hp感染的高危因素。进餐习惯、喜欢酸奶、个人卫生均是Hp感染的保护因素,而暴饮暴食、喜爱辛辣食物、年龄、以往病史、吸烟饮酒、家族病史均是Hp感染的危险因素。结论:分餐习惯、喜欢酸奶、个人卫生均是Hp感染的保护因素,而暴饮暴食、喜爱辛辣食物、年龄、以往病史、吸烟饮酒、家族病史是Hp感染的危险因素,进行有针对性的预防可降低疾病发生率。     

棘冠海星暴发及其对珊瑚礁的生态影响研究进展

棘冠海星的反复暴发是导致印度-太平洋区域珊瑚礁生态系统退化的最主要原因之一。然而，我国对棘冠海星的研究非常有限。本文综述了国内外关于棘冠海星及其暴发的生态影响和应对策略的研究进展，得出以下主要结论：1）雌性棘冠海星个体每年产卵数量高达50万-2亿个，环境因素变化只要导致幼虫和幼体存活率的轻微提高，成体就将得到大量补充；2）棘冠海星暴发的阈值为1000-1500个/km²，暴发周期为10-27 a，每次暴发持续1-10 a，最终可能以"种群集体感染疾病而崩溃"结束；3）棘冠海星暴发对印度洋及太平洋东部和北部珊瑚礁的破坏性非常小，却直接导致太平洋的西部和南部珊瑚礁90%以上的珊瑚死亡，并通过改变珊瑚群落组成、减少珊瑚和鱼类多样性而对珊瑚礁产生间接影响；4）关于棘冠海星暴发原因的假说中"陆地营养物质输入假说"和"捕食者过度捕捞假说"得到了最普遍的认可，但都不能解释所有的暴发事件；5）应对棘冠海星暴发的主要策略有改善水质、设立保护区、投放天敌和人工清理等，其中人工清理是最直接有效的策略，但迄今并没有发现可长期抑制棘冠海星暴发的方法。因此，急需加强对棘冠海星的深入研究，探查其暴发的根本原因和对策。