Robustness of the biotic indicators used for classification of ecological status of lotic water bodies: A testing method when the data series are short

Successful implementation of the Water Framework Directive and achieving its objective of good ecological status of all water bodies depend on the power of the set of monitoring indicators to capture the change in the ecological status of aquatic systems. In this context, testing the robustness and sensitivity of ecological indicators currently used for assessing the status of lotic water bodies is instrumental for the adaptation and further development of assessment methods. This is also a prerequisite for an effective, context-based monitoring system and for improving the quality of the decision making for water bodies. This is particularly challenging in regions where the sets of indicators are under development, the data series are relatively short and data which addresses the individual error sources are lacking. Here we show that hierarchical clusters and ordination analysis provide appropriate tools with which the validity of the ecological status of water bodies set up based on biological multimetric monitoring indices in a small water basin could be tested. We hypothesize that robust and informative monitoring methods classify all water bodies belonging to a single ordination grouping in the same quality class (high, good, moderate, poor or bad). In our case study multimetric biological indicators failed to discriminate between the good and moderate ecological status. Community structure as well as water conductivity and nitrate load were primarily responsible for the observed difference between ordination groupings. Inconsistencies shown in our case study are likely to be induced by insufficient refinement of monitoring schemes and by the constraints existing in the data series and available metadata. We show that multiplication of indicators leads to discrepant interpretation and problematic application. Proposed ordination analysis proves to be a simple and useful tool to detect such discrepancies and support further progress in indicator development. Integrated and longer data and metadata series are needed to refine context-based monitoring methods.     

Circadian preferences in young adults: Psychometric properties and factor structure of the Portuguese version of the Preferences Scale (PS-6)

Morningness is a trait-like variable which has been extensively studied within chronobiology. Despite the number of existing measures to assess morningness, there is a need for brief instruments that are psychometrically sound to be used in applied settings. Accordingly, the modified version of the Preferences Scale (PS-6) comprises six items and was reported to have adequate reliability and satisfactory validity indicators. In this article, the psychometric properties of the Portuguese version of the PS-6 are reported. A total of 700 students attending medical school were recruited, and this sample was randomly divided into two groups. In the first group (n = 352), we assessed the internal consistency calculations and conducted a principal component analysis of the posited structure. In the second group (n = 348), we conducted a confirmatory factor analysis (CFA) using structural equation modeling. Overall, the results indicated that the PS-6 has adequate reliability (α = .75) and is constituted by two components: (I) preferred cognitive activities timings and (II) preferred sleeping–eating timings, respectively. In conclusion, the Portuguese version of the PS seems suitable for use in research and applied settings such as shift work schedules management. However, the applicability of the PS-6 in other samples and further validity indicators should be both investigated. The use of actigraphy and biological measures should also be collected to enhance the robustness of the PS-6.     

Investigating structure and temporal scale in social organizations using identified individuals

Studies of individually identified animals can produce substantialdata sets containing information on the structure and temporalscale of social organizations. However, methods of analyzingsuch data are not well established. Important features of asocial organization are revealed by plotting the rate of persistenceof the associations between pairs of individuals over a rangeof time lags (lagged association rate). The consistency of long-termrelationships can be characterized using the rate of associationof pairs of individuals between their first and last observedassociations (intermediate association rate). A hierarchicalseries of models featuring exponentially decaying lagged associationrates may be fitted to these data. This technique retrievedthe essential parameters of five simulated social organizationsand, when used on real data, portrayed the essential featuresof the patterns of temporal change in relationships betweenanimals. The method should be especially useful for analyzingfissionfusion societies containing 10–10, 000 individuallyidentifiable animals.     

基于多尺度协同的长沙市生态网络构建与层级优化

城市化背景下人类与自然环境的矛盾呈现出多尺度、层级化特征，而传统生态网络的构建方式较少考虑不同尺度下生态要素的关系，无法从区域落实到中心城区，难以形成系统性的解决方案。研究在综合梳理各尺度生态网络构建方法的基础上，以长沙市为例，基于形态学空间格局分析（Morphological Spatial Pattern Analysis，MSPA）、景观连通性原理和生态斑块重要性评价识别生态源地，并通过多层级生态阻力面的确定，综合运用最小费用路径（Least-cost path method，LCP）、电路理论、层级传导理论、尺度嵌套等方法对市域、都市区、中心城区的生态网络进行了协同构建和层级优化，最后基于不同尺度生态网络的特点应用并落实到多层级的国土空间规划体系中。研究结果表明：（1）长沙市域生态网络和都市区生态网络具有较好的层级嵌套特征；共识别两尺度生态叠合源地14个、生态叠合廊道15条，主要通过中心城区内的湘江、浏阳河和捞刀河部分河段与外围生态绿圈相衔接，形成"外环内楔"的空间格局。（2）确定市域重要廊道、市域潜在廊道、生态叠合廊道、都市区重要廊道、都市区潜在廊道的核心保护面积共501.14 km²，并提取位于生态廊道核心保护区范围内的生态夹点和生态障碍点，以进一步落实生态保护修复策略。（3）得到具有重要生态连通功能的中心城区生态绿道长度441.2 km，生态修复单元56个，并结合生态阻力值划分为5级进行针对性修复。（4）基于不同尺度生态网络的衔接、嵌套，最终构建"市域总体生态安全格局-都市区城市生态空间发展格局-以城市绿道为基础的中心城区生态修复单元"，并与不同层级的国土空间规划体系相对应。研究结果将为以大城市为中心的跨尺度生态系统修复和生态安全格局构建提供科学参考。     

1, 3-丙二醇发酵过程中盐浓度的胁迫作用

通过对克雷伯氏菌(Klebsiella pneumoniae)甘油发酵生产1, 3-丙二醇(1, 3-PD)过程的研究发现, 盐浓度对 1, 3-PD发酵有胁迫作用。盐浓度较低时, 菌体生长和产物生成均维持较高速率; 盐浓度较高时会导致菌体生长减慢, 1, 3-PD最终浓度, 甘油到1, 3-丙二醇的转化率降低, 同时1, 3-丙二醇氧化还原酶受到抑制。在5 m3罐中控制合适的盐浓度可以提高1, 3-PD的发酵水平, 使1, 3-PD的最终浓度达到64 g/L, 转化率61%, 生产强度2.1 g/(L·h)。     

Spatial variation of species diversity across scales in an old-growth temperate forest of China

Species richness and abundance are the two most important diversity variables. Species abundance is additive when aggregated across spatial scale, whereas species richness is non-additive. This study analyzes the effect of spatial scale and site on species abundance and richness in a 25-ha temperate forest plot in the Changbai Mountains, northeastern China. The result shows that species abundance and richness are not only dependent on spatial scales, but also dependent on site. Species abundance responds linearly to changes of spatial scale with no intersection in different sites of the study area. However, although species richness also increases with the increase of spatial scale, there are some intersections for the different sites, suggesting that a species-rich site does not always have a high value if the spatial scale is changed. In all, with respect to additive variables, it is relatively easy to extrapolate them from one spatial scale to another spatial scale, as they and the spatial scale usually form a linear relationship. In contrast, non-additive variables are difficult to extrapolate across spatial scales, because they often respond nonlinearly to spatial scale changes. In order to extrapolate these non-additive variables across spatial scales, it is necessary to estimate the relationships between them and spatial scales. As a result, extrapolation of information among spatial scales may be possible, but very difficult, especially for non-additive variables. Because the 25-ha Changbai plot is very small compared to the extent of the world temperate forests, and the vegetation is a relatively uniform type, more such studies in other ecosystems are needed before theories and generalization about scaling effects can be formulated.     

Dormancy of alpine and subalpine perennial forbs

Depth of dormancy of alpine and subalpine perennial forbs in autumn was investigated, which was judged by the number of days required for growth initiation at 24 °C. The depth of dormancy differed depending on Raunkiaer’s life-form and shoot habits. Chamaephytes with perennial shoot-axes showed shallower dormancy than hemicryptophytes with annual shoot-axes, and geophytes with annual shoot-axes showed the deepest dormancy. The results strongly suggest that the dormancy is more endogenously controlled in forbs less hardy to freezing stress. Potential growth ability of alpine herbaceous chamaephytes in autumn is an adaptive advantage, since they utilize the short vegetative period as long as possible. All of the species with annual shoot-axes had winter buds covered with scales. In plants with perennial shoot-axes, percentage of winter buds covered with scales increased with increasing depth of dormancy. The results indicate that the shoot apices are well protected by bud scales in forbs with a long endogeneous-dormant period.     

Developing landscape habitat models for rare amphibians with small geographic ranges: a case study of Siskiyou Mountains salamanders in the western USA

To advance the development of conservation planning for rare species with small geographic ranges, we determined habitat associations of Siskiyou Mountains salamanders (Plethodon stormi) and developed habitat suitability models at fine (10 ha), medium (40 ha), and broad (202 ha) spatial scales using available Geographic Information Systems data and logistic regression analysis with an information theoretic approach. Across spatial scales, there was very little support for models with structural habitat features, such as tree canopy cover and conifer diameter. Model-averaged 95% confidence intervals for regression coefficients and associated odds ratios indicated that the occurrence of Siskiyou Mountains salamanders was positively associated with rocky soils and Pacific madrone (Abutus menziesii) and negatively associated with elevation and white fir (Abies concolor); these associations were consistent across 3 spatial scales. The occurrence of this species also was positively associated with hardwood density at the medium spatial scale. Odds ratios projected that a 10% decrease in white fir abundance would increase the odds of salamander occurrence 3.02–4.47 times, depending on spatial scale. We selected the model with rocky soils, white fir, and Oregon white oak (Quercus garryana) as the best model across 3 spatial scales and created habitat suitability maps for Siskiyou Mountains salamanders by projecting habitat suitability scores across the landscape. Our habitat suitability models and maps are applicable to selection of priority conservation areas for Siskiyou Mountains salamanders, and our approach can be easily adapted to conservation of other rare species in any geographical location.     

Local host competition in the evolution of virulence

The evolution of parasite life histories should usually have correlated effects on host survivorship and/or reproductive success. For example, parasites that reproduce more rapidly might be expected to cause greater reductions in host fitness. Important theoretical advances have recently been made on virulence evolution, but the results are not always consistent. Here I compare two models [ Q. Rev. Biol. 71 (1996) 37 ; Q. Rev. Biol. 75 (2000) 261 ] on the evolution of virulence that get qualitatively different results with respect to the effects of coinfection. I also construct a third model that attempts to connect these two formulations. The results suggest that parasite growth rates should increase as local host competition increases, unless relatedness is at equilibrium. In addition, the qualitative effect of adding coinfections on parasite growth rates depends critically on how the number of coinfections affects transmission success.