Combining population monitoring with habitat vulnerability to assess conservation status in populations of rare and endangered plants

In this paper, we propose an integrative framework to assess the conservation status of rare plant populations that combines population trends with four criteria to assess habitat vulnerability. We illustrate how population trends can be studied using a presence/absence method for a species that is inappropriate for a demographic study. The four other criteria concern habitat fragmentation, the human footprint in the surrounding landscape, observed impacts on a population and elements of habitat structure and quality that may impinge on population status. Each criterion is assessed with various indicators that can be adapted to the biology and ecology of the studied species. To test the feasibility of the proposed framework, we perform a case study of a Mediterranean geophyte Allium chamaemoly L., a species listed for protection in France. The results show a wide range of conservation status among a regional set of populations in the study species. Variation among the indicators used to assess different criteria illustrates the importance of assessing a range of different factors and ways to combine them if population conservation status is to be objectively identified. The study of diverse criteria may allow for a more precise assessment of the causes of differences in conservation status among populations of a single species. The framework of five criteria could be adapted by modification or substitution of indicators or adaptation of thresholds among classes, and thus be applied to other species of conservation importance.     

Mayfly bioindicator thresholds for several anthropogenic disturbances in neotropical savanna streams

Anthropogenic disturbances are widely recognized as major threats to terrestrial and aquatic biodiversity worldwide, including areas located in non-forest ecosystems. Headwater streams in the neotropical savanna are severely threatened by large-scale landscape changes that degrade local habitat characteristics and lead to biodiversity loss. The objective of our study was to evaluate Ephemeroptera assemblages as bioindicators of catchment land use and cover, local streambed and riparian vegetation conditions, and instream water quality. To do so, we sampled mayfly nymphs in 184 stream sites across a broad disturbance gradient in four hydrologic units of the Brazilian neotropical savanna. We selected seven metrics without significant co-variation with natural variability: % catchment urban, riparian vegetation condition index (RCOND), human disturbances of the stream channel and riparian zone (W1_HALL), substrate mean embeddedness (XEMBED), dissolved oxygen (mg L⁻¹), pH, and total phosphorus (mg L⁻¹). We ran threshold indicator taxa analysis (TITAN) for each disturbance metric to detect change points in mayfly genera responses (whether sensitive or tolerant) and assemblage turnover pattern. TITAN showed that 20 of the 39 genera found were robust bioindicators (based on purity and reliability values >0.95), sixteen of them being sensitive to increased disturbance. The most sensitive genera were Tricorythopsis (Leptohyphidae) and Camelobaetidius (Baetidae), showing decreased abundance to most disturbance metrics. We found a turnover pattern of mayfly genera in response to W1_HALL in a narrow variation range. For total phosphorus, the benchmark value defined in Brazilian Federal Legislation is higher than the turnover threshold of several mayfly genera. This indicates that we will lose many sensitive genera even within the limits imposed by national environmental legislation. The indicator taxa approach, based on multiple taxa rather than univariate metrics or single indicator species, demonstrates the value of quantitative ecological information for conserving and managing freshwater ecosystems globally.     

Milk: the new white gold? Milk production options for smallholder farmers in Southern Mali

Until the turn of the century, farmers in West Africa considered cotton to be the ‘white gold’ for their livelihoods. Large fluctuations in cotton prices have led farmers to innovate into other business including dairy. Yet the productivity of cows fed traditional diets is very poor, especially during the long dry season. This study combines earlier published results of farmer participatory experiments with simulation modelling to evaluate the lifetime productivity of cows under varying feeding strategies and the resulting economic performance at farm level. We compared the profitability of cotton production to the innovation of dairy. The results show that milk production of the West African Méré breed could be expanded if cows are supplemented and kept stall-fed during the dry season. This option seems to be profitable for better-off farmers, but whether dairy will replace (some of) the role of cotton as the white gold for these smallholder farmers will depend on the cross price elasticity of cotton and milk. Farmers may (partly) replace cotton production for fodder production to produce milk if the price of cotton remains poor (below US$0.35/kg) and the milk price relatively strong (higher than US$0.38/kg). Price ratios need to remain stable over several seasons given the investments required for a change in production strategy. Furthermore, farmers will only seize the opportunity to engage in dairy if marketing infrastructure and milk markets are further developed.     

Occupancy in dynamic systems: accounting for multiple scales and false positives using environmental DNA to inform monitoring

Occupancy is an important metric to understand current and future trends in populations that have declined globally. In addition, occupancy can be an efficient tool for conducting landscape-scale and long-term monitoring. A challenge for occupancy monitoring programs is to determine the appropriate spatial scale of analysis and to obtain precise occupancy estimates for elusive species. We used a multi-scale occupancy model to assess occupancy of Columbia spotted frogs in the Great Basin, USA, based on environmental DNA (eDNA) detections. We collected three replicate eDNA samples at 220 sites across the Great Basin. We estimated and modeled ecological factors that described watershed and site occupancy at multiple spatial scales simultaneously while accounting for imperfect detection. Additionally, we conducted visual and dipnet surveys at all sites and used our paired detections to estimate the probability of a false positive detection for our eDNA sampling. We applied the estimated false positive rate to our multi-scale occupancy dataset and assessed changes in model selection. We had higher naïve occupancy estimates for eDNA (0.37) than for traditional survey methods (0.20). We estimated our false positive detection rate per qPCR replicate at 0.023 (95% CI: 0.016–0.033). When the false positive rate was applied to the multi-scale dataset, we did not observe substantial changes in model selection or parameter estimates. Conservation and resource managers have an increasing need to understand species occupancy in highly variable landscapes where the spatial distribution of habitat changes significantly over time due to climate change and human impact. A multi-scale occupancy approach can be used to obtain regional occupancy estimates that can account for spatially dynamic differences in availability over time, especially when assessing potential declines. Additionally, this study demonstrates how eDNA can be used as an effective tool for improved occupancy estimates across broad geographic scales for long-term monitoring.     

Responses of nitrogen and phosphorus resorption from leaves and branches to long-term nitrogen deposition in a Chinese fir plantation

为了解森林养分内循环对全球变化的响应, 基于长期模拟氮沉降试验, 研究了杉木(Cunninghamia lanceolata)人工林不同龄级(一年生、二年生和衰老)叶和枝的氮(N)、磷(P)养分分配及其再吸收特征, 并分析了不同模拟N沉降处理时间(7年和14年)杉木叶N、P养分再吸收差异。在12年生杉木中开展模拟N沉降试验, 以尿素(CO(NH₂)₂)为N源, 设N0、N1、N2和N3 4个处理水平, 施氮量分别为0、60、120和240 kg·hm ^-2·a ^-1, 每个处理重复3次。结果表明: (1)叶和枝在衰老过程中碳(C)、N和P含量逐渐降低, 且叶的C、N和P含量比枝高; N含量大小依次为一年生叶>二年生叶>衰老叶>一年生枝>二年生枝>衰老枝, 且N3 > N2 > N1 > N0, 而C:N则呈现相反的趋势; 衰老器官的C:N、C:P、N:P比新鲜器官高; N沉降增加了不同龄级叶和枝(除二年生叶外)的N、N:P和C:P, 但降低了P和C:N。(2)叶和枝的N、P养分再吸收率(RE_N、RE_P)随龄级的增加至衰老有规律地递减, 且RE_P > RE_N; 受长期N沉降的影响, RE_N叶(28.12%) <枝(30.00%), 而RE_P则为叶(45.82%) >枝(30.42%); 杉木叶和枝N:P与RE_N:RE_P之间存在极显著的线性相关关系。(3)随N沉降处理时间的增加, 叶RE_N呈降低态势, 各处理(N1、N2和N3)分别降低了9.85%、3.17%和11.71%; 而RE_P则明显上升, 分别增加了71.98%、42.25%和9.60%。研究结果表明: 不同器官、不同龄级的养分再吸收率随氮沉降处理的水平、处理时间而所有不同; RE_N:RE_P与N:P之间存在紧密关系。     

The ecological and evolutionary significance of frost in the context of climate change

The effects that below-freezing temperature (frost) can have at times of year when it is unusual are an interesting ecological phenomenon that has received little attention. The physiological consequence of formation of ice crystals in plant tissue is often death of the plants, or at least of sensitive parts that can include flower buds, ovaries, and leaves. The loss of potential for sexual reproduction can have long-lasting effects on the demography of annuals and long-lived perennials, because the short-term negative effects of frosts can result in longer-term benefits through lowered populations of seed predators. The loss of host plants can have dramatic consequences for herbivores, even causing local extinctions, and the loss of just flowers can also affect populations of seed predators and their parasitoids. Frosts can cause local extinctions and influence the geographical distribution of some species. The potential for global climate change to influence the frequency and distribution of frost events is uncertain, but it seems likely that they may become more frequent in some areas and less frequent in others.     

Forest succession in Kibale National Park, Uganda: implications for forest restoration and management

Forest succession was studied in four plots in former grasslands at the Ngogo study area in Kibale National Park, Uganda. The plots were located in areas that had been protected from fire for 0.58, 25, 9 and ≈30 years for plots 1, 2, 3 and 4, respectively. Species richness reflected the length of time that the plot had been protected from fire; it was highest in plot 4 and lowest in plot 1. Species density, stem density and basal area were all highest in plot 4 and lowest in plot 1. The species densities of plots 2 and 3 were not different. Similarly, plots 2 and 4 did not differ with regard to stem density or basal area. Animal seed dispersers played a vital role in the colonization of grasslands by forest tree species.     

Effects of Patch-Burn Management on Dickcissel Nest Success in a Tallgrass Prairie

Abstract Grassland birds have declined more than any other North American habitat-associated bird community. Because most species of grassland birds evolved within heterogeneous landscapes created by the interaction of fire and grazing, traditional rangeland management that promotes homogeneity, including annual dormant-season burning combined with early-intensive grazing, might be partly responsible for these declines, especially in some regions of the Great Plains, USA. Recently, an alternative grassland management practice known as patch-burning has been promoted as a means of restoring heterogeneity to grasslands by mimicking the grazing-fire interaction that once occurred on the prairie before European settlement. From 2003 to 2004, we examined effects of patch-burning and traditional management (annual burning followed by early-intensive grazing) on the reproductive success of dickcissels (Spiza americana) in tallgrass prairie in Oklahoma. We monitored 296 dickcissel nests and found that dickcissel nesting phenology differed between traditional and patch-burned pastures. Specifically, dickcissels tended to initiate their nests later in the traditional pasture. Mean number of eggs laid and fledglings produced were similar between the treatments, but nest densities were higher in traditional pastures. Predation was the predominant cause of nest failure and was higher in traditional pastures than in patch-burned pastures. Brown-headed cowbird (Molothrus ater) parasitism was higher in traditional pastures than in patch-burned pastures. Overall, dickcissel nest success was higher in patch-burned pastures than in traditional pastures. The positive response of dickcissel nest success to patch-burn management provides further evidence that this practice can be a useful tool for grassland bird conservation. By creating a mosaic of different stature vegetation, patch-burn management enhances productivity of grassland bird species by providing a refuge area in the unburned patches that affords dickcissels and other nesting grassland birds some protection from the direct (e.g., trampling) and indirect (e.g., cowbird parasitism and predation) effects of grazing, which are not available under traditional management. Patch-burn management should be encouraged as a conservation strategy for grassland birds throughout the Great Plains.