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排序方式: 共有1298条查询结果,搜索用时 15 毫秒
1.
Protein collective motions play a critical role in many biochemical processes. How to predict the functional motions and the related key residue interactions in proteins is important for our understanding in the mechanism of the biochemical processes. Normal mode analysis (NMA) of the elastic network model (ENM) is one of the effective approaches to investigate the structure-encoded motions in proteins. However, the motion modes revealed by the conventional NMA approach do not necessarily correspond to a specific function of protein. In the present work, a new analysis method was proposed to identify the motion modes responsible for a specific function of proteins and then predict the key residue interactions involved in the functional motions by using a perturbation approach. In our method, an internal coordinate that accounts for the specific function was introduced, and the Cartesian coordinate space was transformed into the internal/Cartesian space by using linear approximation, where the introduced internal coordinate serves as one of the axes of the coordinate space. NMA of ENM in this internal/Cartesian space was performed and the function-relevant motion modes were identified according to their contributions to the specific function of proteins. Then the key residue interactions important for the functional motions of the protein were predicted as the interactions whose perturbation largely influences the fluctuation along the internal coordinate. Using our proposed methods, the maltose transporter (MalFGK2) from E. Coli was studied. The functional motions and the key residue interactions that are related to the channel-gating function of this protein were successfully identified.  相似文献   
2.
Meir Davis  Dror Tobi 《Proteins》2014,82(9):2097-2105
Gaussian network model (GNM) modes of motion are calculated to a dataset of h emoglobin (Hb) structures and modes with dynamics similarity to the T state are multiply aligned. The sole criterion for the alignment is the mode shape itself and not sequence or structural similarity. Standard deviation (SD) of the GNM value score along the alignment is calculated, regions with high SD are defined as dynamically variable. The analysis shows that the α1β1/α2β2 interface is a dynamically variable region but not the α1β2/α2β1 and the α1α2/β1β2 interfaces. The results are in accordance with the T → R2 transition of Hb. We suggest that dynamically variable regions are regions that are likely to undergo structural change in the protein upon binding, conformational transition, or any other relevant chemical event. The represented technique of multiple dynamics ‐ based alignment of modes is novel and may offer a new insight in proteins ' dynamics to function relation. Proteins 2014; 82:2097–2105. © 2014 Wiley Periodicals, Inc.  相似文献   
3.
为探求覆膜栽培春玉米旱作田土壤水温变化特征及其对玉米产量和水分利用效率(WUE)的影响,设计垄作覆膜、垄作裸地、平作覆膜、平作裸地(对照)4个处理的田间试验,对春玉米田各生育时段的土壤温度、土层水分、耗水结构及玉米产量进行了监测.结果表明:自播种到抽雄的生育前期春玉米田覆膜较裸地增温1~3 ℃,土壤积温增加155.2~280.9 ℃;延长生育期约5.9~10.7 d.自播种到成苗期覆膜保水效应显著,WUE较裸地提高81.6%~136.4%.春玉米成苗到拔节期正值该区域稳定干旱期,覆膜处理土壤供水层深达80~100 cm,干旱胁迫使WUE较对照降低17.0%~21.6%,产生奢侈耗水.春玉米小喇叭口期后进入雨季,各处理土体复水,并产生过饱渗漏,最终使收获期土体水分与播期持平,贮水丰富.垄作覆膜较裸地增产9.5%;平作覆膜不利于降水入渗而导致渍水,减产5.0%;垄作裸地与平作裸地差异不显著.以雨季前气象干旱期的土壤枯水与雨季后的土壤库水为特征的春玉米田水分供求时序失衡,限制了春玉米的高产.  相似文献   
4.
The universe of Molecular Microbial Pathogenesis is filled with many female and male stars. But there are two particularly bright shining supernovae-like stars: the late Stanley Falkow and the very lively and creative Pascale Cossart. These two outstanding luminaries, surrounded by numerous planets, do not only belong to different scientific generations but their splendor also comes from very different scientific concepts. Stanley Falkow, often referred to as the ‘Father of Molecular Microbial Pathogenesis’, made many groundbreaking contributions to this field by addressing almost all important bacterial pathogens. Pascale Cossart, who could be called in analogy the ‘Queen of Modern Molecular Microbial Pathogenesis’ by combining the Microbiology and Cell Biology, concentrates in her similarly impressive scientific work essentially on a single bacterial species which she studied and still studies in great depth: the facultative intracellular bacterial pathogen Listeria monocytogenes—and the vast majority of her most prominent publications deals with this pathogen in almost all facets. It is certainly not an exaggeration to say that she together with her co-workers and collaborators developed this model bacterium into a paradigm among the intracellular bacterial pathogens.  相似文献   
5.
Abstract: We analyzed 16 years of mark-recapture data to investigate whether a wildfire influenced survival of an arboreal ambush-forager (broad-headed snake [Hoplocephalus bungaroides]) and a terrestrial active forager (small-eyed snake Cryptophis nigrescens). We predicted that wildfire would cause direct mortality and reduce subsequent survival of both snake species. Contrary to this prediction, wildfire did not affect abundance of broad-headed snakes, but abundance of small-eyed snakes decreased by 48% after the wildfire. Estimated annual survival of small-eyed snakes was 37% lower after fire (s=0.47, SE=0.07) than before fire (s=0.74, SE=0.05). Prescribed burning may be a suitable tool for creating open habitat mosaics for the endangered broad-headed snake.  相似文献   
6.
7.
目的:研究优质护理模式对心肌梗死康复期患者心理障碍及不良情绪的影响程度,旨在为康复期患者护理方式的选取提供理论依据。方法:将本院2014年1月~2014年12月的70例心肌梗死康复期患者遵照随机数字表法分为对照组和观察组各35例,对照组采用常规的康复护理进行干预,观察组则以优质护理理念为指导进行护理干预,然后将两组护理前和护理后2周、4周及8周的心理障碍及不良情绪状态采用SECD6量表及HAD量表进行评估,并将评估结果进行比较。结果:观察组护理后2周、4周及8周的SECD6量表及HAD量表评估结果均明显优于对照组,P均0.05,均有显著性差异。结论:优质护理模式对心肌梗死康复期患者治疗信心及不良情绪的影响相对更为积极,为患者康复治疗的顺利进行奠定了基础。  相似文献   
8.
Cardiovascular manifestations in patients with Marfan syndrome (MFS) are related to aortic and valvular abnormalities. However, dilatation of the left ventricle (LV) can occur, even in the absence of aortic surgery or valvular abnormalities. We evaluated genetic characteristics of patients with MFS with LV dilatation. One hundred eighty-two patients fulfilling the MFS criteria, without valvular abnormalities or previous aortic surgery, with a complete FBN1 analysis, were studied. FBN1 mutations were identified in over 81% of patients. Twenty-nine patients (16%) demonstrated LV dilatation (LV end diastolic diameter corrected for age and body surface area > 112%). FBN1-positive patients carrying a non-missense mutation more often had LV dilatation than missense mutation carriers (14/74 versus 5/75; p < 0.05). Finally, FBN1-negative MFS patients significantly more often demonstrated LV dilatation than FBN1-positive patients (10/33 versus 19/149; p < 0.05). It is concluded that LV dilatation in MFS patients is more often seen in patients with a non-missense mutation and in those patients without an FBN1 mutation. Therefore physicians should be aware of the possibility of LV dilatation in these patients even in the absence of valvular pathology.  相似文献   
9.
Anthropogenic change in the abundance or identity of dominant top predators may induce reorganizations in whole food webs. Predicting these reorganizations requires identifying the biological rules that govern trophic niches. However, we still lack a detailed understanding of the respective contributions of body size, behaviour (e.g. match between predator hunting mode and prey antipredator strategy), phylogeny and/or ontogeny in determining both the presence and strength of trophic interactions. Here, we address this question by measuring zooplankton numerical response to fish predators in lake enclosures. We compared the fit to zooplankton count data of models grouping zooplankters based either on 1) body sizes, 2) antipredator behaviour, 3) body size combined with antipredator behaviour or on 4) phylogeny combined with ontogeny (i.e. different life stages of copepods). Body size was a better predictor of zooplankton numerical response to fish than antipredator behaviour, but combining body size and behaviour provided even better predictions. Models based on phylogeny combined with ontogeny clearly outperformed those based on other zooplankton grouping rules, except when phylogeny was poorly resolved. Removing ontogenetic information plagued the predictive power of the highly-resolved (genus-level) phylogenetic grouping but not of medium-resolved or poorly-resolved phylogenetic grouping. Our results support the recent use of phylogeny as a superior surrogate for traits controlling trophic niches, and further highlight the added value of combining phylogeny with ontogenetic traits. Further improvements in our mechanistic understanding of how trophic networks are shaped are bound to uncovering the trophic traits captured by phylogeny and ontogeny, but that currently remain hidden to us.  相似文献   
10.
为了更好地培养学生的能力,必须对传统的教学模式进行改革。针对传统教学模式下生物工程专业细胞生物学教学中学生积极性和主动性不强、缺少综合能力训练内容、作业抄袭、新知识与新进展反映不理想等问题,通过设定合理题目、规定格式和内容、单独报告、择优讲演等方式,利用学生的好胜心理、竞争性和成就感等,提出了新的教学模式。教学实践证明,新的教学模式能够充分调动学生学习的积极性和主动性,提高学生对专业知识的综合与归纳能力、表达演讲能力和电脑使用技能,同时也避免了作业抄袭现象的发生,强化了学生的自信心。另外,也对新模式中存在的问题进行了思考与建议。  相似文献   
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