Effects of urbanization on stream benthic invertebrate communities in Central Amazon

Urbanization and its physical and chemical effects on aquatic environments influence invertebrate communities negatively. Yet, it is not clear how urbanization affects inter-annual variation of invertebrate assemblages in streams. We 1) evaluated urbanization effects on the ecological conditions (biotic and abiotic) of streams in Manaus and 2) analyzed invertebrate community variation over time (between 2003 and 2010). Data on abiotic variables and invertebrates from 2003 were obtained from a previous study. In 2010 we sampled abiotic variables and invertebrate communities in the same low-order urban streams sampled in 2003 (n = 40). We recorded high values of total nitrogen, total phosphorous, deforestation, total impervious area (TIA), water temperature, pH, and electrical conductivity in the most urbanized streams, as compared to the least-impacted ones. In contrast, the least-impacted streams had high dissolved oxygen concentrations. Water quality was poorer in 2010 than in 2003: oxygen concentration was lower and total nitrogen, total phosphorous, deforestation, and TIA significantly higher in 2010. We recorded higher inter-annual variation of abiotic variables in the most-impacted streams as compared to the least-impacted streams. EPT (%, Ephemeroptera, Plecoptera, and Trichoptera) and richness metrics decreased with urbanization. On the other hand, % OP (percent of Oligochaeta and Psychodidae) increased with urbanization. Observed and EPT richness and% OP increased between 2003 and 2010. On the other hand, rarefied richness decreased between years. Increases of observed and EPT richness between 2003 and 2010 were related to low inter-annual variability in streams conditions; however, differences of% OP and rarefied richness were not related to inter-annual variability in environmental conditions. The degree of urbanization did not explain the magnitude of the within-stream difference of invertebrate communities between 2003 and 2010. The increased effects of urbanization represented by the abiotic variables sampled and the reduction of invertebrate richness and increased dominance of tolerant taxa indicate that public policy is not enough to protect or mitigate human impacts on the urban water systems under study.     

Single Cell Analysis Linking Ribosomal (r)DNA and rRNA Copy Numbers to Cell Size and Growth Rate Provides Insights into Molecular Protistan Ecology

Ribosomal (r)RNA and rDNA have been golden molecular markers in microbial ecology. However, it remains poorly understood how ribotype copy number (CN)‐based characteristics are linked with diversity, abundance, and activity of protist populations and communities observed at organismal levels. Here, we applied a single‐cell approach to quantify ribotype CNs in two ciliate species reared at different temperatures. We found that in actively growing cells, the per‐cell rDNA and rRNA CNs scaled with cell volume (CV) to 0.44 and 0.58 powers, respectively. The modeled rDNA and rRNA concentrations thus appear to be much higher in smaller than in larger cells. The observed rRNA:rDNA ratio scaled with CV^0.14. The maximum growth rate could be well predicted by a combination of per‐cell ribotype CN and temperature. Our empirical data and modeling on single‐cell ribotype scaling are in agreement with both the metabolic theory of ecology and the growth rate hypothesis, providing a quantitative framework for linking cellular rDNA and rRNA CNs with body size, growth (activity), and biomass stoichiometry. This study also demonstrates that the expression rate of rRNA genes is constrained by cell size, and favors biomass rather than abundance‐based interpretation of quantitative ribotype data in population and community ecology of protists.     

2001-2010年疏勒河流域植被净初级生产力时空变化及其与气候因子的关系

通过改进的光能利用率CASA模型估算2001-2010年间疏勒河流域陆地生态系统的净第一性生产力（NPP），采用线性趋势分析、变异系数和Hurst指数等方法，分析了NPP的时空变化特征及其与气候因子的相关性。结果表明：①疏勒河流域NPP的空间分布具有明显差异，空间上呈现西北低、东南高的趋势，且具有较明显的经向"条带"分布特征，2001-2010年，NPP平均值为102.26 gC m^-2 a^-1。②2001-2010年，疏勒河流域NPP总体呈增长趋势，年际波动较大，NPP明显增加的区域占总面积25.15%，明显减小的区域约占11.93%。③Hurst指数分析显示，疏勒河流域NPP变化的同向特征强于反向特征，其中持续改善地区占总面积的78.3%，21.7%的区域将由改善转为退化。④在年尺度上，降水是植被NPP变化的主要影响因素，NPP与降水呈弱的正相关关系，与温度相关性不显著；在月尺度上，温度是NPP变化的主要控制因子。疏勒河流域NPP对气候因子不存在明显的时滞和累积效应。     

Morphological and morphometrical analysis of Heterodera spp. populations in Jordan

Phenotypic diversity of five Jordanian populations of cyst nematodes, Heterodera spp. collected from five regions from Jordan (Ar-Ramtha, Madaba, Dana, Al-Karak, and Jerash) was investigated. Soil samples were collected from one representative field in each region. Morphological and morphometrical characteristics revealed that Heterodera latipons is dominated in cereal fields at Ar-Ramtha, Madaba, Dana and Al-Karak regions and Heterodera schachtii in Jerash. Cysts populations from all cereal fields had bifenestrate vulval cone and a strong underbridge. Wherever, cysts of the cabbage population had ambifenestrate vulval cone with long vulval slit. The bullae were absent in Ar-Ramtha, Madaba and Dana populations, but present in Al-Karak and Jerash. Based on 12 morphometrical characters, the first three functions in canonical discriminant analysis accounted 99.3% of the total variation. Distance from dorsal gland duct opening to stylet base, underbridge length, a = L/W (body length/midbody width) and length of hyaline tail tip had strong and significant contributions in the first function. While the second function was strongly influenced by length of hyaline tail, fenestral length, fenestral width and tail length. However, the third canonical discriminate function was found to be influenced by stylet length, fenestral length, a = L/W (body length/midbody width) and underbridge width. The graphical representation of the distribution of the samples showed that the first canonical discriminant function clearly separated H. schachtii from Jerash from other populations. Whereas, H. latipons collected from Madaba and Dana were clearly separated in the second function. The results indicated that differences at morphological and morphometrical levels revealed diverse populations of Heterodera spp. in Jordan.     

Identification of a 13-kDa protein associated with the polyhydroxyalkanoic acid granules from Acinetobacter spp.

Abstract Transferrin-binding proteins from Neisseria meningitidis vary among different isolates. We have identified and studied a hypervariable region adjacent to the carboxyl-end of the transferrin-binding domain of the Tbp2 molecule. The tbp2 genes from six strains of N. meningitidis were cloned and sequenced in this particular region. Sequence analysis of these regions along with five other sequences available from pathogenic Neisseria showed a common organisation of seven highly variable nucleotide stretches interspersed with six conserved nucleotide stretches. The variable regions correlated with the location of immunoreactive epitopes in polyclonal antisera raised to transferrin-binding proteins identified by peptide pin technology. Sequence analysis suggested a mosaic-like organisation of the tbp2 genes. Taken together, these data suggest that the antigenic variation in this part of the protein may result from a strong host immune pressure.     

Effect of tree age on needle morphology and anatomy of Pinus uliginosa and Pinus silvestris – species-specific character separation during ontogenesis

Differences in morphological and anatomical characters of needles between seedlings, saplings and adult trees of the endangered Pinus uliginosa from the Węgliniec Nature Reserve in SW Poland were examined biometrically and statistically assessed using the Student's t-test, Tukey–Kramer test, step-wise discrimination and agglomeration on Euclidean distances according to Ward's method. Pinus sylvestris adults and seedlings were used as comparative material. The results show that needles of all three P. uliginosa generations differ significantly from each other. In seedling needles, several anatomical characters were similar to those of P. sylvestris growing in the vicinity of the reserve. However, P. uliginosa had a lower number of resin canals, lower frequency of fibre-like sclerenchyma cells and higher frequency of thin-walled sclerenchyma cells with large lumens in the spaces between vascular bundles. Needle characters of saplings and adult trees of both species were distinctly more different than it was the case in the seedling stage.