Interleukin-1α Activity in Necrotic Endothelial Cells Is Controlled by Caspase-1 Cleavage of Interleukin-1 Receptor-2: IMPLICATIONS FOR ALLOGRAFT REJECTION*

Inflammation is a key instigator of the immune responses that drive atherosclerosis and allograft rejection. IL-1α, a powerful cytokine that activates both innate and adaptive immunity, induces vessel inflammation after release from necrotic vascular smooth muscle cells (VSMCs). Similarly, IL-1α released from endothelial cells (ECs) damaged during transplant drives allograft rejection. However, IL-1α requires cleavage for full cytokine activity, and what controls cleavage in necrotic ECs is currently unknown. We find that ECs have very low levels of IL-1α activity upon necrosis. However, TNFα or IL-1 induces significant levels of active IL-1α in EC necrotic lysates without alteration in protein levels. Increased activity requires cleavage of IL-1α by calpain to the more active mature form. Immunofluorescence and proximity ligation assays show that IL-1α associates with interleukin-1 receptor-2, and this association is decreased by TNFα or IL-1 and requires caspase activity. Thus, TNFα or IL-1 treatment of ECs leads to caspase proteolytic activity that cleaves interleukin-1 receptor-2, allowing IL-1α dissociation and subsequent processing by calpain. Importantly, ECs could be primed by IL-1α from adjacent damaged VSMCs, and necrotic ECs could activate neighboring normal ECs and VSMCs, causing them to release inflammatory cytokines and up-regulate adhesion molecules, thus amplifying inflammation. These data unravel the molecular mechanisms and interplay between damaged ECs and VSMCs that lead to activation of IL-1α and, thus, initiation of adaptive responses that cause graft rejection.     

Distinctive roles of receptor‐interacting protein kinases 1 and 3 in caspase‐independent cell death of L929

Upon tumour necrosis factor alpha (TNFα) stimulation, cells respond actively by way of cell survival, apoptosis or programmed necrosis. The receptor‐interacting proteins 1 (RIP1) and 3 (RIP3) are responsible for TNFα‐mediated programmed necrosis. To delineate the differential contributions of RIP3 and RIP1 to programmed necrosis, L929 cells were stimulated with TNFα, carbobenzoxy‐valyl‐alanyl‐aspartyl‐[O‐methyl]‐fluoromethylketone (zVAD) or zVAD along with TNFα following RNA interference against RIP1 and RIP3, respectively. RIP1 silencing did not protect cells from TNFα‐mediated cell death, while RIP3 down‐regulation made them refractory to TNFα. The heat shock protein 90 inhibitor geldanamycin (GA) down‐regulated both RIP1 and RIP3 expression, which rendered cells resistant to zVAD/TNFα‐mediated cell death but not to TNFα‐mediated cell death alone. Therefore, the protective effect of GA on zVAD/TNFα‐stimulated necrosis might be attributed to RIP3, not RIP1, down‐regulation. Pretreatment of L929 cells with rapamycin mitigated zVAD‐mediated cell death, while the autophagy inhibitor chloroquine did not affect necrotic cell death. Meanwhile, necrotic cell death by zVAD and TNFα was caused by reactive oxygen species generation and effectively diminished by lipid‐soluble butylated hydroxyanisole. Taken together, the results indicate that RIP1 and RIP3 can independently mediate death signals being transduced by two different death stimuli, zVAD and TNFα. Copyright © 2013 John Wiley & Sons, Ltd.     

Whole-plant ABA flux and the regulation of water loss in Cedrella odorata

Three-month-old Cedrella odorata seedlings were exposed to a soil-drying treatment. During this period, xylem sap was periodically collected from the plant by applying pneumatic pressure to the roots. This also allowed whole-plant water status to be measured by recording the balancing pressure applied. The concentration of ABA in xylem sap (C) was related to the whole-plant transpiration rate (V) which was measured with a sap flow gauge. The analysis of these paired measurements centred on how the reciprocal of C (R) varied with respect to V. This revealed that (1) the observed increases in C could not be explained by the reductions in V alone, (2) initially, decreases in V were associated with proportional increases in the whole-plant ABA flux (M), and (3) this relationship broke down at low values of V since zero flow was associated with a finite value for C estimated to be 41 pmol ABA mmol^?1 H₂O. A simple static model is developed from the observations that is able to explain the data well, and the results are discussed in terms of the effects of ABA on stomatal conductance (g_sw).     

Functional tuning of the catalytic residue pKa in a de novo designed esterase

AlleyCatE is a de novo designed esterase that can be allosterically regulated by calcium ions. This artificial enzyme has been shown to hydrolyze p‐nitrophenyl acetate (pNPA) and 4‐nitrophenyl‐(2‐phenyl)‐propanoate (pNPP) with high catalytic efficiency. AlleyCatE was created by introducing a single‐histidine residue (His¹⁴⁴) into a hydrophobic pocket of calmodulin. In this work, we explore the determinants of catalytic properties of AlleyCatE. We obtained the pK_a value of the catalytic histidine using experimental measurements by NMR and pH rate profile and compared these values to those predicted from electrostatics pK_a calculations (from both empirical and continuum electrostatics calculations). Surprisingly, the pK_a value of the catalytic histidine inside the hydrophobic pocket of calmodulin is elevated as compared to the model compound pK_a value of this residue in water. We determined that a short‐range favorable interaction with Glu¹²⁷ contributes to the elevated pK_a of His¹⁴⁴. We have rationally modulated local electrostatic potential in AlleyCatE to decrease the pK_a of its active nucleophile, His¹⁴⁴, by 0.7 units. As a direct result of the decrease in the His¹⁴⁴ pK_a value, catalytic efficiency of the enzyme increased by 45% at pH 6. This work shows that a series of simple NMR experiments that can be performed using low field spectrometers, combined with straightforward computational analysis, provide rapid and accurate guidance to rationally improve catalytic efficiency of histidine‐promoted catalysis. Proteins 2017; 85:1656–1665. © 2017 Wiley Periodicals, Inc.     

Sample Size Determination for Grouped Exponential Observations: A Cost Function Approach

Calculating the required sample size for a desired power at a given type I error level, we often assume that we know the exact time of all subject responses whenever they occur during our study period. It is very common, however, in practice that we only monitor subjects periodically and, therefore, we know only whether responses occur or not during an interval. This paper includes a quantitative discussion of the effect resulting from data grouping or interval censoring on the required sample size when we have two treatment groups. Furthermore, with the goal of exploring the optimum in the number of subjects, the number of examinations per subject for test responses, and the total length of a study time period, this paper also provides a general guideline about how to determine these to minimize the total cost of a study for a desired power at a given α-level. A specified linear cost function that incorporates the costs of obtaining subjects, periodic examinations for test responses of subjects, and the total length of a study period, is assumed, primarily for illustrative purpose.     

东灵山辽东栎虫损种子调查

2000年8月底至9月底,在北京东灵山地区小龙门林场对2块辽东栎样地中虫损种子下落动态进行了调查.结果表明:2块样地辽东栎种子产量分别高达19.15和91.23颗·m-2,而2块样地虫损种子较多,分别为49.23和33.38个·m-2,所占种子库比例分别为36.93%和25.96%;1999年研究发现(阎文杰,2000),2样地辽东栎种子产量为13.09和7.24颗·m-2,其中虫损种子产量为10.87和5.90颗·m-2,虫损率高达82.22%和75.43%.2年的观察结果均证实虫损种子在种子雨早期迅速下落,且低产年份的虫损种子在种子库中的比例显著高于高产年份.高比例的虫损种子可能是导致辽东栎实生苗更新率低的重要因素.     

Physiological parameters correlated with Tomato Mosaic Virus inducing defensive response in Datura metel

Programed cell death resembles a real nature active defense in Datura metel against TMV after three days of virus infection. This adaptive plant immune response was quantitatively assessed against Tomato Mosaic Virus infection by the following physiological markers; Chlorophyll-a (mg/g), Chlorophyll-b (mg/g), total protein (mg/g), hydrogen peroxide H₂O₂ (μmol/100 mg), DNA (μg/100 mg), RNA (μg/100 mg), Salicylic acid (μg/g), and Comet Assays. Parameters were assessed for asymptomatic healthy and symptomatic infected detached leaves. The results indicated H₂O₂ and Chlorophyll-a as the most potential parameters. Chlorophyll-a was considered the only significant predictor variant for the H₂O₂ dependent variant with a P value of 0.001 and R-square of 0.900. The plant immune response was measured within three days of virus infection using the cutoff value of H₂O₂ (⩽1.095 μmol/100 mg) and (⩽3.201 units) for the tail moment in the Comet Assay. Their percentage changes were 255.12% and 522.40% respectively which reflects the stress of virus infection in the plant. Moreover, H₂O₂ showed 100% specificity and sensitivity in the symptomatic infected group using the receiver-operating characteristic (ROC). All tested parameters in the symptomatic infected group had significant correlations with twenty-five positive and thirty-one negative correlations where the P value was <0.05 and 0.01. Chlorophyll-a parameter had a crucial role of highly significant correlation between total protein and salicylic acid. Contrarily, this correlation with tail moment unit was (r = −0.930, P < 0.01) where the P value was <0.01. The strongest significant negative correlation was between Chlorophyll-a and H₂O₂ at P < 0.01, while moderate negative significant correlation was seen for Chlorophyll-b where the P value < 0.05. The present study discloses the secret of the three days of rapid transient production of activated oxygen species (AOS) that was enough for having potential quantitative physiological parameters for defensive plant response toward the virus.     

Responses of growth and litterfall production to nitrogen addition treatments from common shrublands in Mt. Dongling,Beijing, China

Aims The shrublands of northern China have poor soil and nitrogen (N) deposition has greatly increased the local soil available N for decades. Shrub growth is one of important components of C sequestration in shrublands and litterfall acts as a vital link between plants and soil. Both are key factors in nutrient and energy cycling of terrestrial ecosystems, which greatly affected by nitrogen (N) addition (adding N fertilizer to the surface soil directly). However, the effects and significance of N addition on C sequestration and litterfall in shrublands remain unclear. Thus, a study was designed to investigate how N deposition and related treatments affected shrublands growth related to C sequestration and litterfall production of Vitex negundo var. heterophylla and Spiraea salicifolia in Mt. Dongling region of China.
Methods A N enrichment experiment has been conducted for V. negundo var. heterophylla and S. salicifolia shrublands in Mt. Dongling, Beijing, including four N addition treatment levels (control (N₀, 0 kg N·hm^-2·a^-1), low N (N₁, 20 kg N·hm^-2·a^-1), medium N (N₂, 50 kg N·hm^-2·a^-1) and high N (N₃, 100 kg N·hm^-2·a^-1)). Basal diameter and plant height of shrub were measured from 2012-2013 within all treatments, and allometric models for different species of shrub’s live branch, leaf and root biomass were developed based on independent variables of basal diameter and plant height, which will be used to calculate biomass increment of shrub layer. Litterfall (litterfall sometimes is named litter, referring to the collective name for all organic matter produced by the aboveground part of plants and returned to the surface, and mainly includes leaves, bark, dead twigs, flowers and fruits.) also was investigated from 2012-2013 within all treatments.
Important findings The results showed 1) mean basal diameter of shrubs in the V. negundo var. heterophylla and S. salicifolia shrublands were increased by 1.69%, 2.78%, 2.51%, 1.80% and 1.38%, 1.37%, 1.59%, 2.05% every year; 2) The height growth rate (the shrub height relative growth rate is defined with the percentage increase of plant height) of shrubs in the V. negundo var. heterophylla and S. salicifolia shrublands were 8.36%, 8.48%, 9.49%, 9.83% and 2.12%, 2.86%, 2.36%, 2.52% every year, respectively. Thee results indicated that N deposition stimulated growth of shrub layer both in V. negundo var. heterophylla and S. salicifolia shrublands, but did not reach statistical significance among all nitrogen treatments. The above-ground biomass increment of shrub layer in the V. negundo var. heterophylla and S. salicifolia shrublands were 0.19, 0.23, 0.14, 0.15 and 0.027, 0.025, 0.032, 0.041 t C·hm^-2·a^-1 respectively, which demonstrated that short-term N addition had no significant effects on the accumulation of C storage of the two shrublands. The litter production of the V. negundo var. heterophylla and S. salicifolia communities in 2013 were 135.7 and 129.6 g·m^-2 under natural conditions, respectively. Nitrogen addition promoted annual production of total litterfall and different components of litterfall to a certain extent, but did not reach statistical significance among all nitrogen treatments. Above results indicated that short-term fertilization, together with extremely low soil moisture content and other related factors, lead to inefficient use of soil available nitrogen and slow response of shrublands to N addition treatments.