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1.
Both leica microscopic camera system and scanning electron microscopy was used to observe and characterize the feet, back, abdomen, antennae and mouthparts of the Pseudoregma bambucicola from the bamboo, Bambusa multiplex. The possible functions of all the external morphological characteristics of the P. bambucicola were described and discussed in detail, which offers a basis for further enriching the biology, phylogeny and ecological niche of the P. bambucicola. Moreover, the morphological results should contribute to morphological identification and differentiation of the P. bambucicola from other aphids in the same family.  相似文献   
2.

Background

The study of nuclear architecture using Chromosome Conformation Capture (3C) technologies is a novel frontier in biology. With further reduction in sequencing costs, the potential of Hi-C in describing nuclear architecture as a phenotype is only about to unfold. To use Hi-C for phenotypic comparisons among different cell types, conditions, or genetic backgrounds, Hi-C data processing needs to be more accessible to biologists.

Results

HiCdat provides a simple graphical user interface for data pre-processing and a collection of higher-level data analysis tools implemented in R. Data pre-processing also supports a wide range of additional data types required for in-depth analysis of the Hi-C data (e.g. RNA-Seq, ChIP-Seq, and BS-Seq).

Conclusions

HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic and epigenomic features, and on comparative studies. It uses simple input and output formats and can therefore easily be integrated into existing workflows or combined with alternative tools.

Electronic supplementary material

The online version of this article (doi:10.1186/s12859-015-0678-x) contains supplementary material, which is available to authorized users.  相似文献   
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Summary Chickpea was micropropagated by axillary shoot proliferation (ASP) and modified single node culture (MSNC) methods. Maximum propagule proliferation occurred on Murashige and Skoog (MS) medium enriched with 1–10 μM N6-benzyladenine and 0.01 μM α-naphthaleneacetic acid. The propagules were rooted on MS medium containing 1 μM 3-indolebutyric acid and B5 vitamins. Regenerated plants were fertile and phenotypically similar to control plants grown from seed. The MSNC method was four times more efficient than the ASP method in terms of the number of plants produced per explant.  相似文献   
5.
李语晨  程金花  李明峰  王宇 《生态学报》2019,39(6):1908-1916
以三种(杉木+少量栎类、杉木+栎类+光皮桦、杉木+栎类+光皮桦+马尾松)不同树种配置的杉阔混交林为研究对象,计算了角尺度、大小比数、混交度三个林分空间结构指标,全面分析了湖北省九华山林场不同树种配置杉阔混交防护林林分空间结构特征,结果表明:优势树种主要有杉木(Cunninghamia lanceolata(Lamb.)Hook.)、栎类(Quercus L.)及光皮桦(Betula luminifera)三种,并有少量马尾松(Pinus massoniana)散生于林内,生长优势也较弱。不同树种配置所呈现的林分空间结构也不相同。树种配置Ⅰ(杉木+少量栎类)的角尺度平均值为0.42,大小比数平均值为0.31,混交度平均值为0.18,林木空间分布格局和生长优势度均较好,但混交程度较弱,近乎杉木纯林,对应的生物多样性也会较小。树种配置Ⅱ(杉木+栎类+光皮桦)的角尺度平均值为0.5,大小比数平均值0.32,混交度平均数0.48,空间分布格局整体呈现随机分布;林木主要处于亚优势生长状态,混交度以中度-强度混交为主;而树种配置Ⅲ(杉木+栎类+光皮桦+马尾松)的角尺度平均值为0.58,大小比数平均值0.51,混交度平均数0.54,林木空间格局呈现聚集分布,生长优势水平中庸,为中度混交。全面分析林分空间结构,可以明确林分空间结构中存在的不合理情况,为合理择伐以及近自然经营提供科学依据,使该地区的杉阔混交林的多种功能得到可持续发挥。  相似文献   
6.
The Drosophila PROS-28.1 gene is a member of the proteasome gene family   总被引:4,自引:0,他引:4  
In the present communication, we report the identification of a new gene family which encodes the protein subunits of the proteasome. The proteasome is a high-Mr complex possessing proteolytic activity. Screening a Drosophila λgt11 cDNA expression library with the proteasome-specific antibody N19-28 we isolated a clone encoding the 28-kDa No. 1 proteasome protein subunit. In accordance with the nomenclature of proteasome subunits in Drosophila, the corresponding gene is designated PROS-28.1, and it encodes an mRNA of 1.1 kb with an open reading frame of 249 amino acids (aa). Genomic Southern-blot hybridization shows PROS-28.1 to be a member of a family of related genes. Analysis of the predicted aa sequence reveals a potential nuclear targeting signal, a potential site for tyrosine kinase and a potential cAMP/cGMP-dependent phosphorylation site. The aa sequence comparison of the products of PROS-28.1 and PROS-35 with the C2 proteasome subunit of rat shows a strong sequence similarity between the different proteasome subunits. The data suggest that at least a subset of the proteasome-encoding genes belongs to a family of related genes (PROS gene family) which may have evolved from a common ancestral PROS gene.  相似文献   
7.
This study aimed to create an evidence base for detection of stance-phase timings from motion capture in horses. The objective was to compare the accuracy (bias) and precision (SD) for five published algorithms for the detection of hoof-on and hoof-off using force plates as the reference standard.  相似文献   
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9.
We have analyzed the conformations of EF‐lobes, adjacent pairs of EF‐hand domains, in a coordinate system based on the approximate two‐fold (z) axis that relates the two EF‐hands. Two parameters ‐ dE(ø), the azimuthal angle between the y‐axis and the projection of the offset vector to helix E onto the yz‐plane, and δdF(ø), the difference angle between the two helices (F1 and F2) of odd and even domains—characterize the openness of a single EF‐hand domain and of an EF‐lobe, respectively. We describe and compare values of dE(ø) and of δdF(ø) for EF‐hand proteins of five subfamilies—CTER, CPV, S100, PARV, CALP—in calci‐ and apo‐ forms, with and without bound target proteins. Each subfamily has characteristic changes associated with binding calcium and/or target proteins. Proteins 2014; 82:2915–2924. © 2014 Wiley Periodicals, Inc.  相似文献   
10.
Various crystal forms of the single-stranded DNA, feline panleukopenia virus (FPV), a parvovirus, have been grown of both full virions and empty particles. The structure of empty particles crystallized in an orthorhombic space group P212121, with unit cell dimensions a = 380.1 Å, b = 379.3 Å, and c = 350.9 Å, has been determined to 3.3 Å resolution. The data were collected using oscillation photography with synchrotron radiation. The orientations of the empty capsids in the unit cell were determined using a self-rotation function and their positions were obtained with an R-factor search using canine parvovirus (CPV) as a model. Phases were then calculated, based on the CPV model, to 6.0 Å resolution and gradually extended to 3.3 Å resolution by molecular replacement electron density averaging. The resultant electron density was readily interpreted in terms of the known amino acid sequence. The structure is contrasted to that of CPV in terms of host range, neutralization by antibodies, hemagglutination properties, and binding of genomic DNA. © Wiley-Liss, Inc.  相似文献   
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