Livestock-driven land use change to model species distributions: Egyptian vulture as a case study

Species distribution models (SDMs) are increasingly used to predict species ranges and their shifts under future scenarios of global environmental change (GEC). SDMs are thus incorporating key drivers of GEC (e.g. climate, land use) to improve predictions of species’ habitat suitability (i.e. as an indicator of species occurrence). Yet, most SDMs incorporating land use only consider dominant land cover types, largely ignoring other key aspects of land use such as land management intensity and livestock. We developed SDMs including main land use components (i.e. land cover, livestock and its management intensity) to assess their relative importance in shaping habitat suitability for the Egyptian vulture, an endangered raptor linked to livestock presence. We modelled current and future (2020 and 2050) habitat suitability for this vulture using an organism-centred approach. This allowed us to account for basic species’ habitat needs (i.e. nesting cliff) while gaining insight into our variables of interest (i.e. livestock and land cover). Once nest-site requirements were fulfilled, land use variables (i.e. openland and sheep and goat density) were the main factors determining species’ habitat suitability. Current suitable area could decrease by up to 6.81% by 2050 under scenarios with rapid economic growth but no focus on environmental conservation and rural development. Local solutions to environmental sustainability and rural development could double current habitat suitability by 2050. Land use is expected to play a key role in determining Egyptian vulture's distribution through land cover change but also through changes in livestock management (i.e. species and stocking density). Change in stocking densities (sheep and goats/km²) becomes thus an indicator of habitat suitability for this vulture in our study area. Abandonment of agro-pastoral practises (i.e. below ∼15–20 sheep and goats/km²) will negatively influence the species distribution. Nonetheless, livestock densities above these values will not further increase habitat suitability. Given the widespread impacts of livestock on ecosystems, the role of livestock and its management intensity in SDMs for other (non-livestock-related) species should be further explored.     

An association between a lymphocyte antigen in sheep and the response to vaccination against the parasite Trichostrongylus colubriformis

Lymphocyte antigens were tested in sheep which had been selected for responsiveness to vaccination against the intestinal nematode Trichostrongylus colubriformis. These sheep had been bred in an assortative mating programme which produced offspring designated as either “high responders” or “low responders”, with highly heritable resistance or susceptibility.Ovine lymphocyte antigen (OLA) typing antisera were obtained from parous ewes in the course of matings which produced the high and low responder flocks. A particular antigen (SY1) was found to be present in high frequency on the lymphocytes of high responder (72·2%) and in lower frequency (21·9%) on the lymphocytes of low responder rams. In ewes, the frequency for high responders was 65·7% and for low responders it was 33·5%. A similar association between the SY1 antigen and low faecal egg count was found in random-bred sheep which had been vaccinated with irradiated larvae and challenged with normal larvae. The conclusion was drawn that this lymphocyte antigen was likely to be part of the sheep major histocompatibility complex which influenced the immune response of sheep to vaccination against the parasite.     

Using RT-PCR and glutathione level to study the effect of follicular fluid on in vitro maturation and gene expression of sheep oocytes

The aim of this study is to evaluate the effect of sheep follicular fluid (SFF) supplementation of the in vitro maturation (IVM) media of sheep oocytes on the resumption of meiosis, glutathione (GSH) level, and expression of apoptosis (Bax, Bcl-2) as well as heat shock protein beta-1 (HSPB1) genes. Sheep ovaries were collected from the central slaughterhouse of Riyadh city, KSA. Oocytes were aspirated from 3 to 8 mm follicles. Sheep oocytes were cultured in maturation medium with different concentrations of sheep follicular fluid: 0% (control), 10%, 20% and 40% for 24 h. The results indicated that the maturation rate of oocytes was significantly (p ≤ .05) decreased in 40% SFF (36.87%) versus the control (61.3%), 10% SFF (63.95%) and 20% SFF (64.08%). The supplementation of the IVM medium with 10% SFF induced an intra-oocyte GSH concentration that was significantly higher than in sheep oocytes cultured with 20% and 40% SFF and similar to the GSH content in oocytes cultured without SFF. Real-time polymerase chain reaction analysis of gene expression revealed no significant differences in the Bax and HSPB1 genes between the control and 10% SFF, whereas they were significantly higher in 40% FF (p ≤ .05) compared to the control. The expression of Bax:Bcl-2 was significantly higher in 20% and 40% SFF compared to the control group. In conclusion, the addition of SFF to the IVM culture of sheep oocytes is recommended to support nuclear maturation and increase oocyte competence.     

Establishment of a 4650-year-long eigenvalue chronology based on tree-ring cores from Qilian junipers (Juniperus przewalskii Kom.) in Western China

This paper describes a tree-ring width chronology that spans the past 4650 years, established using the recently developed eigenanalysis technique. The aim is to show whether this eigenanalysis method enables the extraction of long-term tree-growth variations that are due to climatic changes, from a large dataset comprising 1263 tree-ring width records sampled from the highlands of Western China. In order to exclude the so-called growth rate/life span association effect, tree-ring width records were sorted into six subsets, based on the life spans of the trees sampled: 200–400, 400–600, 600–800, 800–1000, 1000–1500 years old, and trees older than 1500 years. Some partial chronologies were created, by pairing the set of all tree samples (living, dead, archaeological remains) with the living trees belonging to each subset. We computed the contours of tree-growth variations (on both 100-year and longer time scales) for each subset, ending with six pairs of these partial subset chronologies. Two sums of all these partial chronologies thus yielded a record of precipitation variations over a period ranging from 2627 BCE up to 2012 CE. It was found that this record shows a high degree of similarity to the existing chronology produced using the regional curve standardization (RCS) method applied to the same dataset, indicating that the eigenvalue chronology is capable of faithfully extracting long-term climatic variations. This also confirms that the first eigenvector represents the growth pattern that is characteristic of each biologically unique tree as well as the micro-environment of each tree stand. The variations observed over the last millennium seem to be connected to a cycle of solar activity with a period of ∼200 years. However, a clear lack of correspondence between solar activity and tree growth prior to 1000 CE indicates that the recent consistency may be coincidental. We believe that the eigenanalysis technique is readily applicable to other kinds of tree-ring datasets from different parts of the world.     

Evaluating the role of livelihood assets in suitable livelihood strategies: Protocol for anti-poverty policy in the Eastern Tibetan Plateau,China

Although numerous studies have been conducted on the relationship between livelihood assets and strategies, only a few quantitative studies exist on the topic for anti-poverty policies with regard to the Tibetan Plateau. This study investigated 357 households in the upper reaches of the Dadu River watershed in the Eastern Tibetan Plateau, China, using the participatory rural appraisal method. Then, applying a multinomial logistic regression model, we quantitatively analyzed the relationship between livelihood assets and livelihood strategies, the findings of which have implications for local agricultural policy interventions. The preliminary results indicate that of the four classifications of livelihood strategies used in this study, the main livelihood strategy is that of the non-farming-dependent household type (i.e., Type III in our study) that combines agricultural and non-farm activities or practices self-employment for wages. There are significant differences in the livelihood assets owned by households with different livelihood strategies. Human, natural, and financial assets have significant influences on livelihood strategies, and the choice of livelihood strategy varies by livelihood assets. Further, with improvements in household labor capacity and cash income per capita, the livelihood strategies of non-agricultural and non-farming households may shift away from agriculture, while an increase in farmland cultivated per capita, cash income per capita, and household labor capacity may encourage households to adopt agriculture-dependent livelihood strategies. These findings contribute to research on livelihood and related development strategies and anti-poverty policies in not only the Eastern Tibetan Plateau but also other regions with similar livelihood strategies.     

Divergent adaptation to Qinghai-Tibetan Plateau implicated from transciptome study of Gymnocypris dobula and Schizothorax nukiangensis

The Schizothoracine fishes are widely distributed in the Qinghai-Tibetan Plateau (QTP) area and its peripheral regions, which provide a prime example of adaptation in highland aquatic environments. Recent progresses have revealed various genetic adaptations of these fishes by comparing to distantly related lowerland species, however, comparative studies on closely-related species of different altitudes are still lacking. In this study, we sequenced and annotated a primitive Schizothoracine fish Schizothorax nukiangensis Tsao and a highly specialized one Gymnocypris dobula. We performed evolutionary analyses to investigate the candidate genes and signaling pathways involved QTP highland adaptation in both Schizothoracine fishes. Analysis of the 11,007 one-copy orthologs to the primitive cyprinid species, Danio rerio, revealed that both G. dobula and S. nukiangensis showed elevated evolutionary rates. A large number of genes related to hypoxia, including genes involved metabolic processes and cardiovascular system development, exhibited signatures of positive selection in both Schizothoracine fishes, but very few positively selected genes were found overlapping among these Schizothoracines. Our results indicated divergent genetic adaptation to highland environment for aquatic species living in QTP.     

Characterisation of terminal sire sheep farm systems,based on a range of environmental factors: a case study in the context of genotype by environment interactions using Charollais lambs

The objective of this study was to define different terminal sire flock environments, based on a range of environmental factors, and then investigate the presence of genotype by environment interactions (G×E) between the environments identified. Data from 79 different terminal sire flocks (40 Texel, 21 Charollais and 18 Suffolk), were analysed using principal coordinate and non-hierarchical cluster analyses, the results of which identified three distinct environmental cluster groups. The type of grazing, climatic conditions and the use of vitamins and mineral supplements were found to be the most important factors in the clustering of flocks. The presence of G×E was then investigated using data from the Charollais flocks only. Performance data were collected for 12 181 lambs, between 1990 and 2010, sired by 515 different sires. Fifty six of the sires had offspring in at least two of the three different cluster groups and pedigree information was available for a total of 161 431 animals. Traits studied were the 21-week old weight (21WT), ultrasound muscle depth (UMD) and log transformed backfat depth (LogUFD). Heritabilities estimated for each cluster, for each trait, ranged from 0.32 to 0.45. Genetic correlations estimated between Cluster 1 and Cluster 2 were all found to be significantly lower than unity, indicating the presence of G×E. They were 0.31 (±0.17), 0.68 (±0.14) and 0.18 (±0.21) for 21WT, UMD and LogUFD, respectively. Evidence of sires re-ranking across clusters was also observed. Providing a suitable strategy can be identified, there is potential for the optimisation of future breeding programmes, by taking into account the G×E observed. This would enable farmers to identify and select animals with an increased knowledge as to how they will perform in their specific farm environment thus reducing any unexpected differences in performance.     

A note on the circadian rhythm and feeding behaviour of sheep fitted with a lightweight GPS collar

The circadian rhythm and feeding behaviour (bite rate) of 16 Scottish Blackface ewes of which eight were fitted with a lightweight (863 g) GPS collar were examined. The collar consisted of a leather harness and a 0.5 l aluminium box and represented 2.2% of the average body mass of the study ewes. No differences in circadian rhythm and bite rate were found between ewes fitted with the collars and ewes that were not. The relevance of using collar weight as a proportion of body mass as a guide to gauge its impact on the feeding behaviour of small ruminant (35–75 kg) herbivores is questioned.     

Sheep antibody response to cell wall antigens expressed in vivo by Pasteurella haemolytica serotype A2

Abstract Cells of Pasteurella haemolytica A2 were harvested directly from the pleural fluid of sheep with pneumonic pasteurellosis and the protein composition of their envelopes was examined by SDS-PAGE. Several high molecular-weight proteins expressed in pleural fluid were absent when the same isolate was grown in nutrient broth, but were produced during culture in iron restricted media. When the cell wall envelopes were examined by immunoblotting with sera and lung washes of lambs recovering from pneumonic pasteurellosis, antibodies to the major outer membrane proteins, the iron-regulated proteins and one other 'in vivo'-expressed antigen were present. These results have implications for the formulation of effective vaccines against pasteurellosis in sheep.