Disrupted phylogeographical microsatellite and chloroplast DNA patterns indicate a vicariance rather than long‐distance dispersal origin for the disjunct distribution of the Chilean endemic Dioscorea biloba (Dioscoreaceae) around the Atacama Desert

Aim The Chilean endemic Dioscorea biloba (Dioscoreaceae) is a dioecious geophyte that shows a remarkable 600 km north–south disjunction in the peripheral arid area of the Atacama Desert. Its restricted present‐day distribution and probable Neogene origin indicate that its populations have a history linked to that of the Atacama Desert, making this an ideal model species with which to investigate the biogeography of the region. Location Chile, Atacama Desert and peripheral arid area. Methods Two hundred and seventy‐five individuals from nine populations were genotyped for seven nuclear microsatellite loci, and plastid trnL–F and trnT–L sequences were obtained for a representative subset of these. Analyses included the estimation of genetic diversity and population structure through clustering, Bayesian and analysis of molecular variance analyses, and statistical parsimony networks of chloroplast haplotypes. Isolation by distance was tested against alternative dispersal hypotheses. Results Microsatellite markers revealed moderate to high levels of genetic diversity within populations, with those from the southern Limarí Valley showing the highest values and northern populations showing less exclusive alleles. Bayesian analysis of microsatellite data identified three genetic groups that corresponded to geographical ranges. Chloroplast phylogeography revealed no haplotypes shared between northern and southern ranges, and little haplotype sharing between the two neighbouring southern valleys. Dispersal models suggested the presence of extinct hypothetical populations between the southern and northern ranges. Main conclusions Our results are consistent with prolonged isolation of the northern and southern groups, mediated by the life‐history traits of the species. Significant isolation was revealed at both large and moderate distances as gene flow was not evident even between neighbouring valleys. Bayesian analyses of microsatellite and chloroplast haplotype diversity identified the southern area of Limarí as the probable area of origin of the species. Our data do not support recent dispersal of D. biloba from the southern range into Antofagasta, but indicate the fragmentation of an earlier wider range, concomitant with the Pliocene–Pleistocene climatic oscillations, with subsequent extinctions of the Atacama Desert populations and the divergence of the peripheral ones as a consequence of genetic drift.     

Utilization of food resources by small and medium‐sized mammals in the Monte Desert biome,Argentina

Theoretical models of species coexistence between desert mammals have generally been based on a combination of food and microhabitat selection by granivorous rodents. Although these models are applicable in various deserts of the world, they cannot explain resource use by mammals in Neotropical deserts. The present study examines diet composition in a mammal assemblage in the Monte desert, Argentina. The results show that two main strategies are used by these mammals: medium‐sized species (hystricognath rodents: Dolichotis patagonum, Lagostomus maximus, Microcavia australis and Galea musteloides; and an exotic lagomorph: Lepus europaeus) are herbivores, whereas small‐sized species (a marsupial: Thylamys pusillus; and sigmodontine rodents: Graomys griseoflavus, Akodon molinae, Calomys musculinus, Eligmodontia typus) are omnivorous. Small mammals also show a tendency towards granivory (C. musculinus), insectivory (A. molinae and T. pusillus) and folivory (G. griseoflavus).     

Characterization of the complete chloroplast genome of Zephyranthes phycelloides (Amaryllidaceae,tribe Hippeastreae) from Atacama region of Chile

Sporadic rains in the Atacama Desert reveal a high biodiversity of plant species that only occur there. One of these rare species is the “Red añañuca” (Zephyranthes phycelloides), formerly known as Rhodophiala phycelloides. Many species of Zephyranthes in the Atacama Desert are dangerously threatened, due to massive extraction of bulbs and cutting of flowers. Therefore, studies of the biodiversity of these endemic species, which are essential for their conservation, should be conducted sooner rather than later. There are some chloroplast genomes available for Amaryllidaceae species, however there is no complete chloroplast genome available for any of the species of Zephyranthes subgenus Myostemma. The aim of the present work was to characterize and analyze the chloroplast of Z. phycelloides by NGS sequencing. The chloroplast genome of the Z. phycelloides consists of 158,107 bp, with typical quadripartite structures: a large single copy (LSC, 86,129 bp), a small single copy (SSC, 18,352 bp), and two inverted repeats (IR, 26,813 bp). One hundred thirty-seven genes were identified: 87 coding genes, 8 rRNA, 38 tRNA and 4 pseudogenes. The number of SSRs was 64 in Z. phycelloides and a total of 43 repeats were detected. The phylogenetic analysis of Z. phycelloides shows a distinct subclade with respect to Z. mesochloa. The average nucleotide variability (Pi) between Z. phycelloides and Z. mesochloa was of 0.02000, and seven loci with high variability were identified: psbA, trnS^GCU-trnG^UCC, trnD^GUC-trnY^GUA, trnL^UAA-trnF^GAA, rbcL, psbE-petL and ndhG-ndhI. The differences between the species are furthermore confirmed by the high amount of SNPs between these two species. Here, we report for the first time the complete cp genome of one species of the Zephyranthes subgenus Myostemma, which can be used for phylogenetic and population genomic studies.     

Solitary male chacma baboons in a desert canyon

Solitary and paired adult (nine) and subadult (one) male chacma baboons, Papio ursinus, were observed over a period of years living in part of a wooded desert canyon not used by adjacent troops. These extratroop males were silent when alone and gave only one alarm vocalization, the “wa-hoo” call, when paired. The space occupied by them is unsuitable for use by troops according to criteria for adequate sleeping sites and access to water. But the foods available to them, especially figs, but also other fruits and fresh acacia seeds, were abundant. These foods are more highly preferred by baboons than those foods available to troop members. Troop members deplete these resources and shift to less preferred foods with lower water content and longer processing times. All of the adult members of the troop adjacent to these isolated males were infected with a skin disease. Isolated males were not so afflicted and so cannot have originated from, or ever been a part of, this troop. They probably moved to the space where they were observed from other inland troops, traveling to their current home range along the narrow canyon river course.     

Thermal responses and temperature tolerance of a dessert ant-lion larva

1. 1.Cueta trivirgata larvae construct pits in the dry Kuiseb River bed in the Namib Desert.

2. 2.An art, Ocymyrmex robustior comprises 65.4% of the biomass of prey consumed by the ant-lions.

3. 3.O. robustior is active between surface temperatures of 27–68°C.

4. 4.Ant-lions tolerate high body temperatures (LD₅₀ = 53.4°C).

5. 5.By exploiting the pit microclimate and by digging below the surface during extreme thermal loads, ant-lions can capture prey at surface temperatures of 13–63°C.

6. 6.These behavioural and physiological adaptations enable ant-lions to maximize the duration of vigilance and hence prey capture success.

Ecological resources for conservation and development in Wadi Allaqi,Egypt*

PULFORD, I. D., MURPHY, K. J., DICKINSON, G., BRIGGS, J. A. & SPRINGUEL, I., 1992. Ecological resources for conservation and development in Wadi Allaqi, Egypt. The creation of Lake Nasser behind the Aswan High Dam on the River Nile has brought about significant environmental changes in Upper Egypt. A multidisciplinary project was started in 1987 to assess the environmental changes associated with periodic inundation in desert ecosystems. The data presented here provide a baseline for studies aimed at assessing the potential for, and ecological impacts of, sustainable development in the target area, and may act as a blueprint for wider-scale development. Soil, water, vegetation, animal and human resources are being monitored. There has been a major increase in plant communities dominated by riverain species, at the expense of the original desert wadi vegetation. The water has attracted human settlement, with some 200–250 people now living in the wadi. The inherent high fertility of the soil has allowed them to grow a range of crops in small plots, using a system of shifting cultivation dictated by the lake water level. While this degree of development may be sustainable, larger-scale development of the fragile wadi ecosystem demands a full assessment of appropriate management techniques.     

Persistence of historical population structure in an endangered species despite near‐complete biome conversion in California's San Joaquin Desert

Genomic responses to habitat conversion can be rapid, providing wildlife managers with time‐limited opportunities to enact recovery efforts that use population connectivity information that reflects predisturbance landscapes. Despite near‐complete biome conversion, such opportunities may still exist for the endemic fauna and flora of California's San Joaquin Desert, but comprehensive genetic data sets are lacking for nearly all species in the region. To fill this knowledge gap, we studied the rangewide population structure of the endangered blunt‐nosed leopard lizard Gambelia sila, a San Joaquin Desert endemic, using restriction site‐associated DNA (RAD), microsatellite and mtDNA data to test whether admixture patterns and estimates of effective migration surfaces (EEMS) can identify land areas with high population connectivity prior to the conversion of native xeric habitats. Clustering and phylogenetic analyses indicate a recent shared history between numerous isolated populations and EEMS reveals latent signals of corridors and barriers to gene flow over areas now replaced by agriculture and urbanization. Conflicting histories between the mtDNA and nuclear genomes are consistent with hybridization with the sister species G. wislizenii, raising important questions about where legal protection should end at the southern range limit of G. sila. Comparative analysis of different data sets also adds to a growing list of advantages in using RAD loci for genetic studies of rare species. We demonstrate how the results of this work can serve as an evolutionary guidance tool for managing endemic, arid‐adapted taxa in one of the world's most compromised landscapes.     

干旱荒漠区生态环境质量遥感动态监测——以古尔班通古特沙漠为例

利用遥感生态指数(RSEI)对区域生态变化进行评价,可以快速、高效、客观地获取研究区生态环境变化状况.本研究以两期Landsat数据为数据源,计算研究区绿度、湿度、热度、干度4个生态因子的遥感生态指数,并基于主成分分析法确定其权重,对古尔班通古特沙漠2006—2017年间的生态环境时空格局进行定性和定量评价.结果表明: 湿度和绿度对古尔班通古特沙漠生态环境质量起正面作用,而热度和干度对生态环境质量起负面作用,其中代表绿度指标的归一化植被指数(NDVI)的贡献最大.2006—2017年间,古尔班通古特沙漠的RSEI有所下降,其均值从0.294下降至0.243,降幅达20.1%,研究区的生态环境状况呈现整体变差的趋势.古尔班通古特沙漠中部生态环境较为稳定,东北部植被覆盖密集区及南缘灌溉区生态环境质量变好,沙漠南部及西北部区域生态环境质量变差.