Horned lizard (Phrynosoma) phylogeny inferred from mitochondrial genes and morphological characters: understanding conflicts using multiple approaches

The genus Phrynosoma includes 13 species of North American lizards characterized by unique and highly derived morphologies and ecologies. Understanding interspecific relationships within this genus is essential for testing hypotheses about character evolution in this group. We analyzed mitochondrial ND4 and cytochrome b gene sequence data from all species of Phrynosoma in conjunction with a previously published dataset including 12S and 16S rRNA gene sequences and morphological characters. We used multiple phylogenetic methods and diagnostic tests for data combinability and taxonomic congruence to investigate the data in separate and combined analyses. Separate data partitions resulted in several well-supported lineages, but taxonomic congruence was lacking between topologies from separate and combined analyses. Partitioned Bremer support analyses also reveals conflict between data partitions in certain tree regions. When taxa associated with well-supported clades were removed from analyses, phylogenetic signal was lost. Combined, our results initially suggest conflict between data partitions, but further tests show the data are only appropriate for phylogenetic reconstruction of those parts of the topology that were well resolved. Nonetheless, our data analyses reveal five well-supported clades: (1) Phrynosoma ditmarsi and Phrynosoma hernandesi, (2) P. ditmarsi, P. hernandesi, and Phrynosoma douglasii, (3) P. ditmarsi, P. hernandesi, P. douglasii, and Phrynosoma orbiculare, (4) Phrynosoma mcallii and Phrynosoma platyrhinos, and (5) Phrynosoma braconnieri and Phrynosoma taurus.     

有鳞目动物鳞片表面超微结构的适应性进化

爬行动物鳞片的微结构是对环境的一种适应。本研究运用扫描电子显微镜观察了北草蜥(Takydromus septentrionalis)、脆蛇蜥(Dopasia harti)和王锦蛇(Elaphe carinata)头部、背部和腹部鳞片的微皮纹结构及感受器特征。结果表明,3个物种的微皮纹和感受器存在种间差异。北草蜥和王锦蛇背部及腹部微皮纹均为狭长带状,脆蛇蜥为不规则多边形。北草蜥和王锦蛇颔片上有感受器,北草蜥无。脆蛇蜥腹部微皮纹上无小齿状凸起,北草蜥和王锦蛇有,与北草蜥相比王锦蛇的小齿状凸起更宽更长。王锦蛇的眼部微皮纹为向上竖起的脊,而其他部位的鳞片为具有小齿状凸起的狭长带状结构。本研究共收集整理17科99种的背鳞微皮纹数据和8科25种的感受器数据,对微皮纹特征和感受器形态进行祖先重建发现,狭长带状背鳞微皮纹主要存在于蜥蜴科(Lacertidae)、游蛇科(Colubridae)和石龙子科(Scincidae)中,而鬛蜥科(Agamidae)、蛇蜥科(Anguidae)、蟒蛇科(Boidae)以及蝰蛇科(Viperidae)的大多为多边形;较原始的感受器形态为无感觉毛的透镜状,这一结构在有鳞目动物进化中发生多次演化。本研究发现蛇蜥的鳞片表面微结构更接近于蛇类动物。因此,有鳞类动物鳞片微皮纹特征和皮肤感受器的形态是对其所处环境多重压力的优化选择。     

Energy consumption by embryos of a viviparous lizard, Eulamprus tympanum, during development

Energy consumption during development has been measured in many oviparous lizards, but not in viviparous lizards in utero. It has always been assumed that energy consumption by embryos of viviparous lizards during development is similar to that of oviparous species. Estimation of energy consumption of viviparous lizards in vivo are confounded by the possible influence of pregnancy on maternal metabolism. Here we separated maternal and embryonic metabolism in measurements of pregnant Eulamprus tympanum throughout pregnancy. Our data support the hypothesis that the energetic cost of development in viviparous lizards (19.8 kJ g⁻¹) is similar to that in oviparous lizards (mean 16.2 kJ g⁻¹), at least for a species with a simple placenta. An increase in maternal metabolism of 29% above that for non-pregnant E. tympanum goes to maintain pregnancy, and represents an important component of the reproductive effort in E. tympanum.     

Species-specific evolution of class I MHC genes in iguanas (Order: Squamata; Subfamily: Iguaninae)

Over the last few decades, the major histocompatibility complex (MHC) has emerged as a model for understanding the influence of natural selection on genetic diversity in populations as well as for investigating the genetic basis of host resistance to pathogens. However, many vertebrate taxa remain underrepresented in the field of MHC research, preventing its application to studies of disease, evolution, and conservation genetics in these groups. This is particularly true for squamates, which are by far the most diversified order of non-avian reptiles but have not been the subject of any recent MHC studies. In this paper, we present MHC class I complementary DNA data from three squamate species in the subfamily Iguaninae (iguanas): the Galápagos marine iguana (Amblyrhynchus cristatus), the Galápagos land iguana (Conolophus subcristatus), and the green iguana (Iguana iguana). All sequences obtained are related to the few published class I genes from other squamates. There is evidence for multiple loci in each species, and the conserved alpha-3 domain appears to be evolving in a species-specific manner. Conversely, there is some indication of shared polymorphism between species in the peptide-binding alpha-1 and alpha-2 domains, suggesting that these two regions have different phylogenetic histories. The great similarity between alpha-3 sequences in marine iguanas in particular suggests that concerted evolution is acting to homogenize class I loci within species. However, while less likely, the data are also compatible with a birth and death model of evolution.     

The vitamin D system in iguanian lizards

The apparent plasma concentration of vitamin D binding protein (DBP) in an iguanian lizard, Pogona barbata, and the affinity of this protein for 25-hydroxyvitamin D₃ (25(OH)D₃), 25-hydroxyvitamin D₂ (25(OH)D₂), and 1,25-dihydroxyvitamin D₃ (1,25(OH)D₃) was found to resemble more closely that of the domestic hen than that of the human. The characteristics of Pogona DBP, the pattern of vitamin D metabolites derived from injected radioactive vitamin D₃ and the plasma concentrations of endogenous 25-hydroxyvitamin D (25(OH)D) in a range of iguanian lizards have been examined. The findings suggest that 25-hydroxyvitamin D (25(OH)D) is the major metabolite of vitamin D, and that it may represent the storage form of vitamin D in these species in the same way as in mammals. High concentrations of vitamin D within iguanian embryos and egg yolks suggest a role for this compound in embryogenesis in these species, and perhaps indicates that there is a mechanism for vitamin D delivery to eggs comparable to that found in the domestic chicken.     

大壁虎线粒体基因组全序列及其结构(英文)

采用长PCR扩增、克隆和引物步行等方法,测定了大壁虎(Gekkogecko)线粒体基因组全序列。序列全长16435bp,共有13个蛋白质编码基因、2个rRNA基因和22个tRNA基因。基因组的组成、顺序、编码链的选择、tRNA的结构、较低的碱基G含量、对碱基T的偏好以及GC和AT偏斜,都与大部分脊椎动物相同或相近。但有些特征揭示了壁虎类的原始性蛋白质编码基因密码子第3位表现为对碱基A的偏好,更接近两栖类和鱼类而不是羊膜动物;标准终止密码子(TAA)只出现于3个蛋白质编码基因中,比大部分脊椎动物少。tRNA基因核苷酸长度为63～76nt,除了tRNACys和tRNASer(AGY)缺少D臂,其余的二级结构均呈典型的三叶草状。     

A network of Wnt, hedgehog and BMP signaling pathways regulates tooth replacement in snakes

Most dentate vertebrates, from fish to humans, replace their teeth and yet the molecular basis of tooth replacement is poorly understood. Canonical Wnt signaling regulates tooth number in mice and humans, but it is unclear what role it plays in tooth replacement as it naturally occurs. To clarify this, we characterized Wnt signaling activity in the dental tissues of the ball python Python regius. This species replaces teeth throughout life (polyphyodonty) and in the same manner as in humans, i.e., sequential budding of teeth from the tip of the dental lamina. From initiation stage onwards, canonical Wnt read-out genes (Lef1 and Axin2) are persistently expressed by cells in the dental lamina tip and surrounding mesenchyme. This implies that molecular signaling at work during dental initiation carries over to tooth replacement. We show that canonical Wnt signaling promotes cell proliferation in python dental tissues and that by confining Wnt activity in the dental lamina the structure extends instead of thickens. Presumably, lamina extension creates space between successive tooth buds, ensuring that tooth replacement occurs in an ordered manner. We suggest that hedgehog signaling confines Wnt activity in the dental epithelium by direct planar repression and, during tooth replacement stages, by negatively regulating BMP levels in the dental mesenchyme. Finally, we propose that Wnt-active cells at the extending tip of the python dental lamina represent the immediate descendents of putative stem cells housed in the lingual face of the lamina, similar to what we have recently described for another polyphyodont squamate species.     

The bony labyrinth of Platecarpus (Squamata: Mosasauria) and aquatic adaptations in squamate reptiles

Mosasaurs were among the last marine reptiles that lived before the Cretacesous–Paleogene extinction. Little is known about the sensory evolution of mosasaurs in relation to their aquatic lifestyle. In this study, the braincase of Platecarpus was CT-scanned and virtual models were constructed showing the bony labyrinth — or the inner ear — a sensory apparatus for balance and hearing. The virtual inner ear consists of the semicircular canals, vestibule, and cochlea. Compared with extant squamates, Platecarpus resembles sea snakes in having a small vestibule with a flat dorsal surface, but it differs from non-mosasaurian squamates in having rounded semicircular canals. Phylogenetic linear regression analysis supports a linear relationship, independent from phylogeny, between the length of the three semicircular canals and the length of the skull. The semicircular canals of Platecarpus are shorter than predicted, but the fossil data fell within the 95% prediction interval calculated from the extant data and the skull length of Platecarpus. Although size reduction of the bony labyrinth has been associated with aquatic adaptions in mammals, our results suggest that in squamates, semicircular canal size is related to skull size rather than habitat preference.