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Programmed ribosomal frameshifting allows the synthesis of alternative, N-terminally coincident, C-terminally distinct proteins from the same RNA. Many viruses utilize frameshifting to optimize the coding potential of compact genomes, to circumvent the host cell's canonical rule of one functional protein per mRNA, or to express alternative proteins in a fixed ratio. Programmed frameshifting is also used in the decoding of a small number of cellular genes. Recently, specific ribosomal − 1 frameshifting was discovered at a conserved U_UUU_UUA motif within the sequence encoding the alphavirus 6K protein. In this case, frameshifting results in the synthesis of an additional protein, termed TF (TransFrame). This new case of frameshifting is unusual in that the − 1 frame ORF is very short and completely embedded within the sequence encoding the overlapping polyprotein.The present work shows that there is remarkable diversity in the 3′ sequences that are functionally important for efficient frameshifting at the U_UUU_UUA motif. While many alphavirus species utilize a 3′ RNA structure such as a hairpin or pseudoknot, some species (such as Semliki Forest virus) apparently lack any intra-mRNA stimulatory structure, yet just 20 nt 3′-adjacent to the shift site stimulates up to 10% frameshifting. The analysis, both experimental and bioinformatic, significantly expands the known repertoire of − 1 frameshifting stimulators in mammalian and insect systems.  相似文献   
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Autophagy refers to the conserved, multi-step mechanism that delivers cytosolic cargoes to vesicles of the endo-lysosomal system for degradation. It maintains cellular homeostasis by ensuring the continuous degradation of misformed/senescent intracellular components and the associated recycling of nutrients. Autophagy also represents an important cell-intrinsic defense mechanism against invasion by intracellular pathogens, including viruses. Autophagy might oppose viral invasion by targeting viral particles or viral components for degradation. It can also promote the interaction of viral constituents with receptors specialized in the activation of innate immunity pathways or facilitate the activation of anti-viral adaptive immunity. In response to such pressures, viruses have evolved various sophisticated strategies to avoid anti-viral autophagic responses or to manipulate the autophagic machinery to promote their own replication. This review focuses on our current knowledge of autophagy-related events that take place at early stages during interaction of viruses with host cells as well as on their associated consequences in terms of virus replication and cell fate.  相似文献   
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A three-dimensional reconstruction of Sindbis virus at 7.0 Å resolution presented here provides a detailed view of the virion structure and includes structural evidence for key interactions that occur between the capsid protein (CP) and transmembrane (TM) glycoproteins E1 and E2. Based on crystal structures of component proteins and homology modeling, we constructed a nearly complete, pseudo-atomic model of the virus. Notably, this includes identification of the 33-residue cytoplasmic domain of E2 (cdE2), which follows a path from the E2 TM helix to the CP where it enters and exits the CP hydrophobic pocket and then folds back to contact the viral membrane. Modeling analysis identified three major contact regions between cdE2 and CP, and the roles of specific residues were probed by molecular genetics. This identified R393 and E395 of cdE2 and Y162 and K252 of CP as critical for virus assembly. The N-termini of the CPs form a contiguous network that interconnects 12 pentameric and 30 hexameric CP capsomers. A single glycoprotein spike cross-links three neighboring CP capsomers as might occur during initiation of virus budding.  相似文献   
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本研究通过基因替换和重组等技术构建重组病毒解释XJ-160病毒单方向血清学反应的分子基础。以实验室构建的XJ-160病毒全感染性克隆为基础获得XJ-160病毒和辛德毕斯病毒(SINV)糖蛋白基因单独和同时相互替换的重组病毒。首先研究重组病毒对细胞及动物感染性和致病性,同时利用微量细胞中和试验方法鉴定引起XJ-160病毒单方向血清学反应的基因区段。研究结果显示XJ-160病毒E2糖蛋白是影响病毒在细胞中的生长速率,空斑形态及对乳鼠致病性的主要因素。中和试验结果显示SIN病毒E2糖蛋白对决定引起XJ-160病毒单方向血清学反应起着重要作用。本研究确定了引起XJ-160病毒单方向血清学反应的基因区段,并为进一步研究XJ-160病毒基因组结构与功能打下了基础。  相似文献   
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蜜蜂是重要的传粉昆虫,在农业生产和生态平衡中起着重大作用。近年来蜜蜂数量大幅下降,由于农药使用、生态污染、气候变化等原因,以及受到天敌如胡蜂Vespidae的影响,更重要的是受到病原如真菌、细菌以及各种病毒的危害。其中蜜蜂病毒病是造成蜜蜂数量减少的重要原因之一。为了调查贵州省越夏期和越冬期中华蜜蜂感染病毒病的情况,利用RT-PCR技术对贵州省兴义市、息烽县、台江县、龙里县采集的样本进行检测。结果显示:贵州省越夏期以红火蚁Solenopsis invicta Buren病毒Sindbis virus(SINV)为主要流行病毒,而越冬期以囊状幼虫病毒Sacbrood virus(SBV)和黑蜂王台病毒Black queen cell virus(BQCV)为主要流行病毒。本研究初步调查了贵州省主要中蜂饲养区在两个重要饲养阶段发生蜜蜂病毒病情况,这将在一定程度上为防治蜜蜂病毒病提供理论依据。  相似文献   
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