Distribution of plant functional types along gradients of disturbance intensity and resource supply in an agricultural landscape

Abstract. In this study, plant functional types are understood as groups of plants with similar biological traits displaying significant optima or maxima on a gradient plane of resource supply and disturbance intensity. The biological traits refer to expansion, vegetative regeneration, generative reproduction, dispersal and seed bank longevity. 129 vegetation samples were taken in an agricultural landscape in southwestern Germany, covering a wide range of terrestrial vegetation types – but with the exception of forests and wetlands. For each site, also soil data were recorded. Mean daily soil moisture was estimated with a simple model. Soil moisture, balanced nitrogen supply and available phosphorus were combined into a factor ‘resource supply’. In addition, disturbance intensity was estimated for each site. This factor was based on (1) frequency of disturbance, (2) disturbance depth below or above the soil surface, and (3) proportion of the area affected by a discrete disturbance event. 30 plant groups with similar biological characteristics resulted from a cluster analysis, based on a compilation of 19 biological traits for a regional species pool. Logistic regression on a gradient plane of disturbance intensity and resource supply yielded response curves for 28 groups. The dependent variable was defined as the probability of encountering all members of a group in a sample. 17 groups display a significant response curve on the gradient plane. Plants with a potential for long- range dispersal are concentrated on sites with low or high disturbance intensities (e.g. fallow land, fields, lawns). On sites with medium disturbance intensity (e.g. meadows) and low to medium resource supply, small-range dispersal predominates. There are no distinct trends concerning seed bank longevity. The potential for vertical and lateral expansion increases with decreasing disturbance intensity. Only at medium disturbance intensities does vertical expansion correlate positively with resource supply. Rapid detachment of daughter individuals occurs more often on productive sites than on less productive sites. Diversity of groups with similar biological traits is highest on sites with medium disturbance intensities.     

The potential for and constraints on the evolution of compensatory ability in Asclepias syriaca

To investigate the potential for and constraints on the evolution of compensatory ability, we performed a greenhouse experiment using Asclepias syriaca in which foliar damage and soil nutrient concentration were manipulated. Under low nutrient conditions, significant genetic variation was detected for allocation patterns and for compensatory ability. Furthermore, resource allocation to storage was positively, genetically correlated both with compensatory ability and biomass when damaged, the last two being positively, genetically correlated with each other. Thus, in the low nutrient environment, compensatory ability via resource allocation to storage provided greater biomass when damaged. A negative genetic correlation between compensatory ability and plant biomass when undamaged suggests that this mechanism entailed an allocation cost, which would constrain the evolution of greater compensatory ability when nutrients are limited. Under high nutrient conditions, neither compensatory ability nor allocation patterns predicted biomass when damaged, even though genetic variation in compensatory ability existed. Instead, plant biomass when undamaged predicted biomass when damaged. The differences in outcomes between the two nutrient treatments highlight the importance of considering the possible range of environmental conditions that a genotype may experience. Furthermore, traits that conferred compensatory ability did not necessarily contribute to biomass when damaged, demonstrating that it is critical to examine both compensatory ability and biomass when damaged to determine whether selection by herbivores can favor the evolution of increased compensation. Received: 2 April 1999 / Accepted: 21 September 1999     

MicroID2: A Novel Biotin Ligase Enables Rapid Proximity-Dependent Proteomics

Identifying protein–protein and other proximal interactions is central to dissecting signaling and regulatory processes in cells. BioID is a proximity-dependent biotinylation method that uses an “abortive” biotin ligase to detect proximal interactions in cells in a highly reproducible manner. Recent advancements in proximity-dependent biotinylation tools have improved efficiency and timing of labeling, allowing for measurement of interactions on a cellular timescale. However, issues of size, stability, and background labeling of these constructs persist. Here we modified the structure of BioID2, derived from Aquifex aeolicus BirA, to create a smaller, highly active, biotin ligase that we named MicroID2. Truncation of the C terrminus of BioID2 and addition of mutations to alleviate blockage of biotin/ATP binding at the active site of BioID2 resulted in a smaller and highly active construct with lower background labeling. Several additional point mutations improved the function of our modified MicroID2 construct compared with BioID2 and other biotin ligases, including TurboID and miniTurbo. MicroID2 is the smallest biotin ligase reported so far (180 amino acids [AAs] for MicroID2 versus 257 AAs for miniTurbo and 338 AAs for TurboID), yet it demonstrates only slightly less labeling activity than TurboID and outperforms miniTurbo. MicroID2 also had lower background labeling than TurboID. For experiments where precise temporal control of labeling is essential, we in addition developed a MicroID2 mutant, termed lbMicroID2 (low background MicroID2), that has lower labeling efficiency but significantly reduced biotin scavenging compared with BioID2. Finally, we demonstrate utility of MicroID2 in mass spectrometry experiments by localizing MicroID2 constructs to subcellular organelles and measuring proximal interactions.     

Studies on the population dynamics of the assassin bug,Agriosphodrus dohrni Signoret,in relation to resting site utilization

Population Ecology -     

Measuring dominance and diversity in ecological communities: choosing the right variables

Abstract. Although there are many studies in searching for the most useful community diversity index, the importance of choosing an appropriate parameter has been neglected. Here, we examined dominance and diversity in early post-fire chaparral communities using different variables, i.e. plant density, cover and biomass. Significant different results were produced by applying different parameters and the difference may be caused by the inconsistency in density, cover, and biomass allocated in each life form. Among the three parameters, biomass was most successful in detecting differences among communities because the apportionment of biomass among species was more variable than that of density. Although the three species variables represent different aspects of community properties and their relative performance may vary among communities, we recommend the use of biomass or productivity data as the most appropriate variable because it can best represent per capita resource use and resource partitioning among organisms in competitive situations.     

Feeding of an Iberian stream cyprinid assemblage: seasonality of resource use in a highly variable environment

Food resource use by seven cyprinids from an Iberian stream was analysed over 9 months. Differences in food resource use were found both between species and within species between seasons. Plant material was a more important food for carp, nase, goldfish and barbel than for gudgeon, roach and chub, irrespective of the season. Chironomid larvae were the staple animal food for the former five species throughout the year. Roach and chub, especially the latter, displayed large seasonal variations in prey use, with chironomid larvae only being important during autumn. Ephemerellid nymphs and ephemeropteran imagos dominated the animal diet of chub during spring and summer, respectively. Dipteran adults and Formicidae were the most important prey for roach during spring and summer, with other common prey being ephemerellid nymphs and hydropsychid larvae. Food resource overlap among the three dominant species (roach, barbel and chub) displayed a large seasonal variation. High overlaps were observed during autumn when these species used the same resources. During summer overlaps were much lower with each species specialising on different prey. The remaining less abundant species had large diet overlaps amongst themselves and with barbel, over all seasons. It is suggested that morphological constraints, habitat partitioning and temporal changes in food resource limitation may be involved in producing these patterns of food resource use.     

Resource utilization of wood decomposers: mycelium nuclear phases and host tree species affect wood decomposition by Dacrymycetes

Throughout evolution, wood-decaying fungi have adapted to different woody plants, resulting in wide species diversity. Dacrymycetes, which are brown-rot fungi and include host-recurrent species, are useful for studying fungal adaptation to host trees. When estimating the decay abilities of basidiomycetes, the nuclear phases of the mycelium should be considered, since dikaryons are thought to be more efficient wood-decayers than monokaryons; however, the difference in their physiological performances remains largely untested. In this study, we verified the decay capabilities of dikaryotic and monokaryotic mycelia and tested the hypothesis that the host tree-recurrence of wood-decaying fungi results from their resource utilization in each host wood. The mass loss caused by eight dacrymycetous species from wood of four tree species was investigated in pure cultures. The decomposition ability of dikaryons was greater than that of monokaryons in these experiments. Dikaryotization is expected to raise certain physiological parameters, such as the quantity and variety of wood-decomposing enzymes, thus enhancing the decomposition rate of wood decomposers. The high decomposition ability of dikaryons suggests their superiority over monokaryons to survive under natural conditions. All dacrymycetous strains caused high mass loss from Pinus wood, the main host tree of Dacrymycetes. However, most of the individual tested strains did not cause the greatest mass loss from the wood of their original host group. This result suggested that host-recurrence can be partly explained by resource utilization, but it is likely that other micro-organisms and abiotic factors also affect host-recurrence in the field environment.     

Do nutrient-competition models predict nutrient availabilities in limnetic ecosystems?

Recent theory on resource competition, predicated on the importance of hypothesized trade-offs between minimum requirements for nutrient resources, predicts that there should be negative correlations between the supply rate of major limiting nutrients and the availability of at least some secondary nutrients and/or among the availabilities of different limiting nutrients. However, an analysis of four data sets from large-scale surveys of lakes shows mostly positive correlations among the availabilities and supplies of nutrients. In contrast, a fifth data set, obtained in an area of high acidification, does show several important negative correlations that are consistent with the nutrient competition models. Further analyses suggest two possible explanations for the preponderance of positive correlation. Negative correlations between nutrients and light indicate that an important trade-off among species regulating phytoplankton may involve low light requirements versus low nutrient requirements. The existence of negative correlations in nutrient availabilities in acidic lakes (where herbivory appears less important than in buffered lakes) also suggests that another important trade-off may involve an ability to minimize loss rates (especially due to grazing) versus an overall ability to exploit nutrient resources. Received: 23 February 1996 / Accepted: 30 September 1996     

Scarcity-weighted global land and metal footprints

Resource scarcity poses an increasing threat to the supply security of modern economies. Some grand challenges ahead are the limits to agricultural expansion and the geologic scarcity of metals. To better understand the drivers behind land and metal depletion, footprint-type indicators are gaining importance. Such indicators, however, fail to differentiate between vastly different degrees of resource availability across regions. Using crop suitability areas and metal reserve base data, we calculate scarcity-weighted land and metal footprints for the major economies with the EXIOBASE global multi-regional input-output model. Scarcity-weighting causes a significant reordering of the global rankings of countries for both land and metal footprints. Land scarcity focuses mostly on cereals (∼54% from the total agricultural land used) and oil crops (∼15%), the former being notably affected by water scarcity issues in Asia and the Middle East. Metal scarcity focuses on copper ores (∼69%) and iron (∼11%), the former being a globally scarce metal impacting multiple economies. The large impact of scarcity-weighting suggests that, while non-weighted resource footprints are a valid proxy of resource use, these are not always aligned with further implications of resource depletion and supply security. In this sense, scarcity-weighting can offer an initial overview of those countries where analyses at finer scales may be more valuable. Our results also show that international trade is a major driver of land and metal depletion in some developing regions. This highlights the intersection of environmental justice and globalization, as the burden of resource depletion often falls into poorer regions which critically rely on exports.     

Assessment of sustainable development: A case study of Wuhan as a pilot city in China

Building resource-conserving and environmental-friendly society (referred to as “two-oriented society”, TOS) is an important way proposed by the Chinese government to achieve sustainable development. In this paper, a pilot city of constructing TOS in China-Wuhan is taken as a case to evaluate the performance of TOS from 2005 to 2012. Treating the indicators of TOS as multi-dimensional vectors, this paper proposes a methodological framework by integrating the methods of vector angle and Euclidean distance to measure the angle and distance between the vector of annual status of TOS and the vector of planning target of TOS. Based on this, the paper employs coordination (the angle between the two vectors) and effectiveness (the distance between the two vectors) to describe the performance of TOS and its subsystems, including economic development (ED), social and people's well-being (SW), resource consumption (RC), resource recycling (RR), environmental quality (EQ) and pollution control (PC). Moreover, grey relational analysis approach is used to analyse the core factors influencing TOS construction. Results reveal that the performance of TOS in Wuhan is continually improved in the study period while the performance of its subsystems shows several differences: (1) both coordination and effectiveness of TOS, ED and SW keep on improving, while those of EQ fluctuate; (2) the effectiveness of both RR and PC shows a downward trend while the coordination of them fluctuates; (3) the actual value of RC indicators reaches the planning targets. Based on the analysis of determinants, we suggest that strengthening technological ability and adding investment are extremely important to improve the performance of RC and PC. For the sake of improving RR, it is critical to provide more government public expenditure and encourage financial institutions to provide more loans to stimulate and support the businesses. Moreover, increasing the amount of R&D funding and maintaining steady external economic environment are proved to be effective to improve all subsystems of TOS.