Soil properties differently influence estimates of soil CO2 efflux from three chamber-based measurement systems

Soil CO₂ efflux is a major component of net ecosystem productivity (NEP) of forest systems. Combining data from multiple researchers for larger-scale modeling and assessment will only be valid if their methodologies provide directly comparable results. We conducted a series of laboratory and field tests to assess the presence and magnitude of soil CO₂ efflux measurement system × environment interactions. Laboratory comparisons were made with a dynamic, steady-state CO₂ flux generation apparatus, wherein gas diffusion drove flux without creating pressure differentials through three artificial soil media of varying air-filled porosity. Under these conditions, two closed systems (Li-6400-09 and SRC-1) exhibited errors that were dependent on physical properties of the artificial media. The open system (ACES) underestimated CO₂ flux. However, unlike the two other systems, the ACES results could be corrected with a single calibration equation that was unaffected by physical differences in artificial media. Both scale and rank changes occurred among the measurement systems across four sites. Our work clearly shows that soil CO₂ efflux measurement system × environment interactions do occur and can substantially impact estimates of soil CO₂ efflux. Until reliable calibration techniques are developed and applied, such interactions make direct comparison of published rates, and C budgets estimated using such rates, difficult.     

Biochemical Origin and Refractory Properties of Humic Acid Extracted from the Maize Plant

Humic acids (HA) contribute to soil fertility because of their chemical, physical, and biological properties. The origin of HAs in soils has puzzled scientists for decades, and what HAs are and what their origin is remain unclear. The isolation of HAs in plants, which have characteristics close to soil HAs, suggests the probable origin of soil-HA is the preservation of plant tissue, indicating biochemical origin. In this paper HA from maize plant at different stages of maturity is isolated, from which it was found that the evolution of this fraction depends on and is derived from cell wall formation. Evidence was also found that HA was above all composed of lignin and cutin residues, and was characterized by low surface area. After 8 months of incubation in both mineral-artificial and natural soils, humic acid isolated form maize plant could be recovered intact.     

A Standardized Method for the Analysis of Liver Sinusoidal Endothelial Cells and Their Fenestrations by Scanning Electron Microscopy

Liver sinusoidal endothelial cells are the gateway to the liver, their transcellular fenestrations allow the unimpeded transfer of small and dissolved substances from the blood into the liver parenchyma for metabolism and processing. Fenestrations are dynamic structures - both their size and/or number can be altered in response to various physiological states, drugs, and disease, making them an important target for modulation. An understanding of how LSEC morphology is influenced by various disease, toxic, and physiological states and how these changes impact on liver function requires accurate measurement of the size and number of fenestrations. In this paper, we describe scanning electron microscopy fixation and processing techniques used in our laboratory to ensure reproducible specimen preparation and accurate interpretation. The methods include perfusion fixation, secondary fixation and dehydration, preparation for the scanning electron microscope and analysis. Finally, we provide a step by step method for standardized image analysis which will benefit all researchers in the field.     

Modifications of nonwoven polyethylene terephthalate fibrous matrices via NaOH hydrolysis: Effects on pore size, fiber diameter, cell seeding and proliferation

A simple NaOH treatment method was developed for fabricating nonwoven fibrous matrices of polyethylene terephthalate (PET) with predictable porosity, pore size, and fiber diameter. Matrices with various porosities (90–97%), fiber diameters (13.5–25 μm), and pore sizes (54–65 μm) were prepared by treating with 1N NaOH at 70 °C for up to 120 h, resulting in up to 70% hydrolysis of the PET polymer. The hydrolysis of PET polymer by NaOH was found to follow a second-order kinetics with respect to the fiber surface area. Accordingly, mathematical models were developed to predict matrix porosity, fiber diameter, and apparent pore size of the PET matrices. The exponential decay coefficient of PET polymer was found to be 0.0147 h⁻¹. The matrices were used to study the effects of pore size and fiber diameter on cell seeding and proliferation. The seeding study demonstrated that cell adhesion on PET fibers can be enhanced, largely due to the increased surface roughness of the PET fibers. Decreasing the fiber diameter increases the surface curvature of the fibers and decreases available surface area for cell attachment, which, however, only resulted in a small decrease in the cell growth rate.     

Effect of cross-linker and cross-linker concentration on porosity, surface morphology and thermal behavior of metal alginates prepared from algae (Undaria pinnatifida)

Alginic acid and metal alginates are prepared from fresh algae using extraction method. FTIR spectra indicate that alginic acid is converted into metal alginate. Asymmetric stretching of free carboxyl group of zinc alginate at 1596 cm⁻¹ is shifted to 1582 cm⁻¹ in cadmium alginate, due to the change of charge density, radius and atomic weight of the cation. Surface morphology changes by changing the cross-linker and cross-linker concentration at same magnification. Total intrusion volume, porosity (%) and pore size distribution also changes by changing cross-linker and cross-linker concentration. Thermal degradation results reveals that zinc and cadmium alginates started decomposing at 100 °C, but rapid degradation started around 300 °C and showed a stepwise weight loss during thermal sweep, indicating different types of reactions during degradation. Kinetic analysis was performed to fit with TGA data, where the entire degradation process has been considered as two or three consecutive 1st order reactions.     

The Functional Interrelationship between Gap Junctions and Fenestrae in Endothelial Cells of the Liver Organoid

Functional intact liver organoid can be reconstructed in a radial-flow bioreactor when human hepatocellular carcinoma (FLC-5), mouse immortalized sinusoidal endothelial M1 (SEC) and A7 (HSC) hepatic stellate cell lines are cocultured. The structural and functional characteristics of the reconstructed organoid closely resemble the in vivo liver situation. Previous liver organoid studies indicated that cell-to-cell communications might be an important factor for the functional and structural integrity of the reconstructed organoid, including the expression of fenestrae. Therefore, we examined the possible relationship between functional intact gap junctional intercellular communication (GJIC) and fenestrae dynamics in M1-SEC cells. The fine morphology of liver organoid was studied in the presence of (1) irsogladine maleate (IM), (2) oleamide and (3) oleamide followed by IM treatment. Fine ultrastructural changes were studied by transmission electron microscopy (TEM) and scanning electron microscopy (SEM) and compared with control liver organoid data. TEM revealed that oleamide affected the integrity of cell-to-cell contacts predominantly in FLC-5 hepatocytes. SEM observation showed the presence of fenestrae on M1-SEC cells; however, oleamide inhibited fenestrae expression on the surface of endothelial cells. Interestingly, fenestrae reappeared when IM was added after initial oleamide exposure. GJIC mediates the number of fenestrae in endothelial cells of the liver organoid.     

Preparation of a monolithic capillary column with immobilized alpha-mannose for affinity chromatography of lectins

A simple method for the preparation of an affinity monolithic (also called continuous bed) capillary column for alpha-mannose-specific lectins is described. 2-Hydroxyethyl methacrylate in combination with (+)-N,N -diallyltartardiamide (DATD) and piperazine diacrylamide (PDA, 1,4-bisacryloyl-piperazine) as crosslinkers, were used as monomers for the monolith. After oxidation of DATD with periodate, alpha-mannose with spacer was bound to the aldehyde groups of the polymeric skeleton via reductive amination to form an affinity column for the separation, enrichment or binding studies of mannose-specific lectins. The permeability of the column was excellent. The porosity of the monolith was investigated by scanning electron microscope (SEM) and inverse size exclusion chromatography (ISEC). The affinity of the monolith was evaluated by frontal analysis (FA) and fluorescence microscopy (FM) using fluorescently labeled concanavalin (Con A). Frontal affinity chromatography showed a specific interaction of two different lectins with the alpha-mannose-modified monolith. According to FM the affinity sites were evenly distributed over the monolithic bed.     

数字图像处理法确定林带疏透度随机误差研究

在分析以数字图像处理为测定法确定林带疏透度误差来源的基础上,对其中的随机误差进行研究,结果表明:林带整体疏透度的机误方差小于其冠部和干部的较大者;所研究的各类型林带各部位疏透度随机误差均遵从正态分布;林带整体疏透度随机误差的分布与树种和带内配置无关;北京杨、双阳快杨和其它类杂交杨的矩形或品字形配置林带各自冠部与干部疏透度机误方差之间无显著差异,而乡土杨林带干部的显著大于冠部的。本文还分别各类型林带的各部位确定了由林带疏透度测定值估计其总体实际值的随机误差限,并讨论了在测定林带疏透度过程中据该误差限计算样本量和划定测定范围的应用意义。最后总结提出:以增加测定同一林带不同样段像片数限定随机误差,通过模型计算订正疏透度测定值中的投影误差和影缩误差确定林带疏透度是建立完善的“数字图像处理法确定林带疏透度”新方法的可行途径。     

Quantitative Ultrasound Assessment of Cortical Bone Properties Beyond Bone Mineral Density

The development of quantitative ultrasound (QUS) technologies to measure bone is motivated by the need to overcome the limitations of X-ray based methods, measuring bone mineral density (BMD) which is the gold standard to date for the diagnosis of osteoporosis. Because it uses mechanical waves, the ultrasound modality is a particularly relevant means to probe bone mechanical resistance. The vast majority of QUS technologies commercialized to date merely aim to provide surrogate markers for BMD. During the past decade, innovative QUS approaches have emerged to assess bone beyond BMD. This may be achieved by (1) specifically assessing the cortical bone compartment, independently of trabecular bone, and (2) providing intrinsic bone properties such as cortical bone thickness and material properties. One specific motivation is to estimate intracortical porosity, a quantity reflected in material properties. This article aims at an overview of recent QUS developments to measure cortical bone properties. We also draw a picture of the current knowledge on bone material properties of interest for bone QUS. We discuss the potential of ultrasound to provide novel biomarkers of bone health through the assessment of material properties.     

Large shrubs partly compensate negative effects of grazing on hydrological function in a semi-arid savanna

Semiarid woodlands and savannas are globally important biomes that provide ecosystem goods and services such as habitat for biota and sinks for carbon, support millions of people that rely primarily on pastoralism, and supply livelihoods for about a third of the global human population. Savannas, however, are prone to degradation by overgrazing, and encroachment by woody plants, reducing their capacity to produce forage that pastoral enterprises depend on. We examined the impacts of livestock grazing and woody encroachment on soil hydrological processes, hypothesizing that heavy grazing by livestock would reduce hydrological function, whereas woody plants would increase hydrological function, therefore, partially offsetting any negative effects of overgrazing by livestock. Understanding the major drivers of soil hydrology in savanna ecosystems is important because water is a critical, yet limited resource in savannas. We found that livestock grazing reduced the early (sorptivity) and late (steady-state infiltration) stages of infiltration under both ponding and tension, and attributed this to a reduction in porosity caused by livestock trampling. Steady-state infiltration and sorptivity under ponding were greater under the canopies of woody shrubs than in open areas, partly compensating for any negative effect of grazing. Structural equation modeling revealed a direct positive effect of shrub height on hydrological functions, and an indirect effect via increases in litter cover. Our results suggest that woody plants can play important roles in driving hydrological function in savannas, counteracting the suppressive effect of livestock overgrazing on infiltration processes. Management strategies in semiarid savannas should aim to reduce trampling by livestock and retain large woody plants in order to maintain hydrological function.