Development of a genetic linkage map and identification of homologous linkage groups in sweetpotato using multiple-dose AFLP markers

Sweetpotato genomic research is minimal compared to most other major crops despite its worldwide importance as a food crop. The development of a genetic linkage map in sweetpotato will provide valuable information about the genomic organization of this important species that can be used by breeders to accelerate the introgression of desired traits into breeding lines. We developed a mapping population consisting of 240 individuals of a cross between ‘Tanzania’, a cream-fleshed African landrace, and ‘Beauregard’, an orange-fleshed US sweetpotato cultivar. The genetic linkage map of this population was constructed using Amplified Fragment Length Polymorphism (AFLP) markers. A total of 1944 (‘Tanzania’) and 1751 (‘Beauregard’) AFLP markers, of which 1511 and 1303 were single-dose markers respectively, were scored. Framework maps consisting of 86 and 90 linkage groups for ‘Tanzania’ and ‘Beauregard’ respectively, were developed using a combination of JoinMap 3.0 and MAPMAKER/EXP 3.0. A total of 947 single-dose markers were placed in the final framework linkage map for ‘Tanzania’. The linkage map size was estimated as 5792 cM, with an average distance between markers of 4.5 cM. A total of 726 single-dose markers were placed in the final framework map for ‘Beauregard’. The linkage map length was estimated as 5276 cM, with an average distance between markers of 4.8 cM. Duplex and triple-dose markers were used to identify the corresponding homologous groups in the maps. Our research supports the hypothesis that sweetpotato is an autopolyploid. Distorted segregation in some markers of different dosages in this study suggests that some preferential pairing occurs in sweetpotato. However, strict allopolyploid inheritance in sweetpotato can be ruled out due to the observed segregation ratios of the markers, and the proportion of simplex to multiple-dose markers. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. This paper is a portion of a dissertation submitted by Jim C. Cervantes-Flores.     

枣不同基因型在体愈伤芽再生能力评价与同质多倍体新种质创制

枣树田间在体愈伤途径同质多倍体诱导新技术可有效避免倍性嵌合体产生,快速获得纯多倍体。在体愈伤芽再生是该技术成功应用的基础。利用该技术,对115个枣和4个酸枣基因型的田间愈伤芽再生能力进行了评价,并对4个枣基因型进行了多倍体诱导。结果表明:94.78%的枣基因型和100%的酸枣基因型可诱导出愈伤组织,80%的枣基因型和100%的酸枣基因型实现了芽再生。不同枣基因型间出愈率存在显著差异,变幅为0~100%,平均出愈率为76.48%,变异系数为37%;基于出愈率将供试基因型分为5类,即易出愈伤、较易出愈伤、较难出愈伤、难出愈伤和不出愈伤基因型。不同基因型的平均单枝截面出芽数差异显著(0~10.33个),平均出芽数为1.84;据出芽率也可将供试基因型分为5类,即易出芽、较易出芽、较难出芽、难出芽和不出芽基因型。出愈率和出芽率没有显著相关性,易出愈伤的基因型不一定易出芽。利用田间愈伤途径同质多倍体诱导新技术,获得了乐金1号、宁夏长枣、运城婆婆枣3个枣品种的纯四倍体新种质和磨盘枣的纯三倍体新种质。     

中国葱属单生组4种植物的核型研究

对葱属单生组Allium sect.Haplostemon Boiss.的4种8个地方居群的核型进行了研究,其中3个种的核型属首次报道。研究结果表明：除在棱叶韭内同时具二倍体、三倍体和四倍体居群外,所研究的其余种的居群均为二倍体。以本研究为基础,结合国内外对该组已有的细胞学研究,得出以下结论：（1）单生组的染色体基数为8,在组内存在1A和2A两种核型类型;（2）组内随体染体类型丰富,在该组物种的生存适应方面可能起重要作用;（3）有些种（如薤白A.macrostemohn,棱叶韭A.caeruleum等）表明出现明显的种内核型分化,有的种甚至在外部形态上也有分化;（4）高度不育的三倍体（棱杏韭）和和五倍体（薤白）居群靠小鳞茎和珠芽进行无性繁殖,以此保持群的稳定和扩大。另外,从生境、繁育制度、多倍化以及这三者之间的关系等方面分析,认为 在单生组中不同的生境有利于诱发染色体的结构作数目变异。多倍化和兼性无融合生殖繁殖制度并存,则有利于克服染色色体变异所带来的育性降低这一繁育障碍,同时使居群中所发生的染色体变异得以保存,因此,多倍化和普性无融合生殖繁育制度并存是该组中多倍体类群进化的重要机制之一。     

Cytological and Reproductive Studies of Japanese Diplazium (Woodsiaceae; Pteridophyta). III. The Cytological Complexity of Species Groups with Simply Pinnate to Bipinnatifid Leaves

Diplazium with simply pinnate or bipinnatifid leaves. Diplazium wichurae var. wichurae, D. wichurae var. amabile, D. okudairae, and D. pin-faense are sexual diploids (2n=82; n=41II); D.× kidoi and D. × okudairaeoides are sterile diploids (2n= 82; meiosis irregular); D. donianum var. donianum is an apomictic triploid (2n=123; n=123II); D. donianum var. aphanoneuron is a sterile triploid (2n=123; meiosis irregular); D. crassiusculum, D. cavalerianum, D. incomptum, D. longicarpum, and D. pullingeri are sexual tetraploids (2n= 164; n=82II); and D. lobatum is an apomictic tetraploid (2n=164; n=164II). This is the first report of the chromosome numbers of D. lobatum, D. crassiusculum, D. incomptum, D. longicarpum, D. pullingeri, and D. × okudairaeoides, as well as the mitotic chromosome numbers of D. wichurae var. amabile, D. okudairae, D. pinfaense, and D. ×kidoi. The mitotic chromosome number, meiotic behavior, sterility, and allozyme analysis confirm that D. × kidoi and D. × okudairaeoides are hybrids between D. pin-faense and D. wichurae var. wichurae and D. okudairae and D. wichurae var. wichurae, respectively. Diplazium with simply pinnate to bipinnatifid leaves displayed an extraordinary cytological and reproductive complexity: a polyploidal series with diploids to hexaploids, sexual and apomictic reproduction, and natural hybridization. Received 14 August 2001/ Accepted in revised form 1 October 2001     

Detecting and mapping repulsion-phase linkage in polyploids with polysomic inheritance

It has been suggested that ratios of coupling- to repulsion-phase linked markers can be used to distinguish between allopolyploids and autopolyploids, because repulsion-phase linkages are much more difficult to detect in autopolyploids with polysomic inheritance than allopolyploids with disomic inheritance. In this report, we analyze the segregation pattern of repulsion-phase linked markers in polyploids without complete preferential pairing. The observed repulsion-phase recombination fraction (R) in such polyploids is composed of a fraction due to crossing-over (R_c) and another fraction due to independent assortment (R_i). R_i is the minimum distance that can be detected between repulsion-phase linked markers. Because R_i is high in autopolyploids (0.3373, 0.4000, 0.4286 and 0.4444) for autopolyploids of 2n=4x, 6x, 8x and 10x), large population sizes are required to reliably detect repulsion linkages. In addition, the default linkage used in mapping-programs must be greater than the corresponding R_i to determine whether a polyploid is a true autopolyploid. Unfortunately, much lower default linkages than the R_is have been used in recent polyploid studies to determine polyploid type, and markers have been incorporated into polyploid maps based on the R values. Herein, we describe how mapping repulsion linkages can result in spurious results, and present methods to accurately detect the degree of preferential pairing in polyploids using repulsion linkage analysis. Received: 29 February 2000 / Accepted: 17 July 2000     

17号染色体不同倍体与乳腺癌临床病理特征的相关性

摘要 目的：探讨17号染色体不同倍体与乳腺癌临床病理特征的相关性。方法：选取2018年1月至2019年12月确诊为乳腺癌的患者78例(乳腺癌组)与乳腺良性肿瘤患者78例(良性组),采用原位荧光杂交检测所有患者的病灶组织染色体不同倍体情况,分析患者的临床病理特征并进行相关性分析。结果：乳腺癌组17号染色体的多倍体率为85.9 %,显著高于良性组(3.8 %,P<0.05)。不同年龄、性别、发病位置、病理类型乳腺癌患者的17号染色体多倍体率对比差异无统计学意义(P>0.05),不同淋巴结转移、组织学分化、临床分期、ER阳性、PR阳性患者的17号染色体多倍体率对比差异具有统计学意义(P<0.05)。Pearson分析显示17号染色体多倍体率与乳腺癌患者的淋巴结转移、组织学分化、临床分期、ER阳性、PR阳性存在显著相关性(P<0.05);多因素Logistic回归分析显示淋巴结转移、组织学分化、临床分期、ER阳性、PR阳性都为17号染色体多倍体的主要危险影响因素(P<0.05)。结论：乳腺癌患者多伴随有17号染色体多倍体,与其患者的淋巴结转移、组织学分化、临床分期、ER阳性、PR阳性等临床病理特征显著相关。     

Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae)

The evolutionary pattern of the myc-like anthocyanin regulatory gene antR-Cor was examined in the dwarf dogwood species complex (Cornus Subgenus Arctocrania) that contains two diploid species (C. canadensis and C. suecica), their putative hybrids with intermediate phenotypes, and a tetraploid derivative (C. unalaschkensis). Full-length sequences of this gene (∼4 kb) were sequenced and characterized for 47 dwarf dogwood samples representing all taxa categories from 43 sites in the Pacific Northwest. Analysis of nucleotide diversity indicated departures from neutral evolution, due most likely to local population structure. Neighbor-joining and haplotype network analyses show that sequences from the tetraploid and diploid intermediates are much more strongly diverged from C. suecica than from C. canadensis, and that the intermediate phenotypes may represent an ancestral group to C. canadensis rather than interspecific hybrids. Seven amino acid mutations that are potentially linked to myc-like anthocyanin regulatory gene function correlate with petal colors differences that characterize the divergence between two diploid species and the tetraploid species in this complex. The evidence provides a working hypothesis for testing the role of the gene in speciation and its link to the petal coloration. Sequencing and analysis of additional nuclear genes will be necessary to resolve questions about the evolution of the dwarf dogwood complex.     

QTL analysis of leaf morphology in tetraploid Gossypium (cotton)

Molecular markers were used to map and characterize quantitative trait loci (QTLs) determining cotton leaf morphology and other traits, in 180 F₂ plants from an interspecific cross between a Gossypium hirsutum genotype carrying four morphological mutants, and a wild-type Gossypium barbadense. The prominent effects of a single region of chromosome 15, presumably the classical ”Okra-leaf” locus, were modified by QTLs on several other chromosomes affecting leaf size and shape. For most traits, each parent contained some alleles with positive effects and others with negative effects, suggesting a large potential for adapting leaf size and shape to the needs of particular production regimes. Twenty one QTLs/loci were found for the morphological traits at LOD≥3.0 and P≤0.001, among which 14 (63.6%) mapped to D-subgenome chromosomes. Forty one more possible QTLs/loci were suggested with 2.0≤LOD<3.0 and 0.001<P≤0.01. Among all of the 62 possible QTLs (found at LOD≥2.0 and P≤0.01) for the 14 morphological traits in this study, 38 (61.3%) mapped to D-subgenome chromosomes. This reinforces the findings of several other studies in suggesting that the D-subgenome of tetraploid cotton has been subject to a relatively greater rate of evolution than the A-subgenome, subsequent to polyploid formation. Received: 26 April 1999 / Accepted: 30 July 1999     

Protein synthesis in mouse embryos with experimentally produced asynchrony between chromosome replication and cell division

Summary The cleavage of fertilized mouse eggs was prevented during cytochalasin B incubation and consequently these eggs became tetraploid the following day during in vitro culture. When the eggs were cultured further in normal medium, they cleaved and gave rise to tetraploid blastocysts. Protein synthesis was analysed in these embryos at different developmental stages using two-dimensional polyacrylamide gel electrophoresis. The protein synthesis pattern of one-cell tetraploid eggs was intermediate between those of normal one- and two-cell embryos. Tetraploid two-cell embryos expressed protein sets equivalent to those of untreated four-cell embryos, and tetraploid four-cell embryos synthesized proteins similar to those of four- to eight-cell controls. At subsequent pre-implantation stages the asynchrony was no longer detectable. When fertilized eggs were cultured continuously in the presence of cytochalasin B, they became tetraploid, octoploid and more and more polyploid without cleavage occurring. The protein synthesis patterns expressed by these one-cell polyploid eggs did not resemble that of normal fertilized eggs, but were similar to those of cleaving control embryos and blastocysts of equivalent age and nuclear division. These results strongly suggest that in early mouse embryos stage-specific translation is temporally correlated with chromosome replication (karyokinesis) and independent of cell division (cytokinesis) or cell interaction.Some of these results were presented at the IX Congress of the International Society of Developmental Biologists in Basle, Switzerland, August 28–September 1, 1981     

菘蓝多倍体育种的研究

本文报道药用植物菘蓝(Isatis indigotica Foft.)同源四倍体的诱发、鉴定、选育的研究。用0.05-0.5％浓度的秋水仙碱水溶液处理萌发的种子,或用0.05-0.3％浓度的此溶液处理幼苗的生长点,均可以获得四倍体植株。最适宜的处理时间为6-12小时。除用直接的细胞学技术鉴定多倍体植株外,一些重要的间接鉴定特征,如叶表皮保卫细胞中叶绿体数,花粉沟数可作为鉴定本种多倍体植株的可靠指标。比较了四倍体植株和二倍体亲本的生物学特性。经过数代选育,获得了性状稳定、繁殖力正常、根与叶中活性成分均有较大幅度提高、生产性能良好的品系。