EVOLUTION OF SCAPULA SIZE AND SHAPE IN DIDELPHID MARSUPIALS (DIDELPHIMORPHIA: DIDELPHIDAE)

The New World family Didelphidae, the basal lineage within marsupials, is commonly viewed as morphologically conservative, yet includes aquatic, terrestrial, scansorial, and arboreal species. Here, I quantitatively estimated the existing variability in size and shape of the Didelphidae scapula (1076 specimens from 56 species) using geometric morphometrics, and compared size and shape differences to evolutionary and ecologic distances. I found considerable variation in the scapula morphology, most of it related to size differences between species. This results in morphologic divergence between different locomotor habits in larger species (resulting from increased mechanical loads), but most smaller species present similarly shaped scapulae. The only exceptions are the water opossum and the short-tailed opossums, and the functional explanations for these differences remain unclear. Scapula size and shape were mapped onto a molecular phylogeny for 32 selected taxa and ancestral size and shapes were reconstructed using squared-changed parsimony. Results indicate that the Didelphidae evolved from a medium- to small-sized ancestor with a generalized scapula, slightly more similar to arboreal ones, but strikingly different from big-bodied present arboreal species, suggesting that the ancestral Didelphidae was a small scansorial animal with no particular adaptations for arboreal or terrestrial habits, and these specializations evolved only in larger-bodied clades.     

Deep Learning-Based Multi-Label Tissue Segmentation and Density Assessment from Mammograms

Objectives: Breast cancer is the most commonly diagnosed type of cancer among women and a common cause of cancer-related deaths. Early diagnosis and treatment of breast cancer is critical in disease prognosis. Breast density is known to have a correlation with breast cancer. In recent years, there has been an increasing interest in the investigation of computer-aided methods for early diagnosis of breast cancer. In this study, a new fully-automated deep learning-based cascaded model was proposed for breast density assessment. In the first stage, the segmentation of adipose, fibroglandular, and pectoral muscle tissues from the digitized film mammograms of the Digital Database for Screening Mammography (DDSM) was investigated using various types of U-nets. Features extracted from the breast tissue segmentation predictions were then used to assess breast density in the second stage. Material and methods: 66 and 296 mediolateral oblique mammograms were selected from DDSM dataset for segmentation and breast density assessment systems, respectively. Different U-nets with varying number of layers and filters were implemented and the model having the highest performance was determined. U-net performance was investigated using categorical cross-entropy, Dice, Tversky, Focal Tversky, and logarithmic cosine-hyperbolic Dice loss functions. The performances of U-nets having different types of connections were investigated. The performances of U-nets having pre-trained weights from VGG16, VGG19, and ResNet50 networks in the encoding path were also investigated. Segmentation results were improved by using an image processing pipeline based on morphological operators. Segmentation performance was presented in terms of accuracy, balanced accuracy, intersection over union, and Dice's similarity coefficient (DSC) metrics. The segmentation system predictions were then used to estimate mammographic density using a machine learning pipeline by extracting features related to the fibroglandular tissue percentage. Results: Using ResNet50-U-net on the test data, average DSC scores of 82.71%, 73.39%, and 95.30% were obtained for adipose, fibroglandular, and pectoral muscle tissue segmentation, respectively. The mammogram segmentation results are 3%-12% better than the current state-of-the-art DSC in the literature when considering all of the foreground tissues concurrently. A breast density classification accuracy of 76.01% was achieved on a separate mammogram dataset, which is comparable to the recent studies in the literature. Conclusion: The proposed system can be used for automatic segmentation of mammogram into adipose, fibroglandular, and pectoral muscle tissues. The segmentation model enables the estimation of the fibroglandular-adipose tissue interface, which is recently found to be an important region for breast cancer investigations. The proposed fully-automatic breast density assessment system has a comparable performance to the ones in the literature.     

倭蛙属(无尾目:蛙科)肩带研究

对倭蛙属（Nanorana）已知3种：高山倭蛙（Nanorana parkeri）、倭蛙（N. pleskei）和腹斑倭蛙（N. ventripunctata）的肩带作了连续切片后进行Masson染色,发现其上喙骨（epicoracoid）的融合与重叠的状况与虎纹蛙（Rana rugulosa）较相似,而与无尾目中其它物种已知的肩带形态存在较大的差异.倭蛙属和虎纹蛙等与已知肩带类型的蛙亚科其它的物种在系统进化中可能来源于不同的最近共同祖先.     

对渤海藻类的新认识

本文阐述了对渤海藻类的新认识。主要指明其为由顶和前间系组成的( 3Ia 或 3I)联合古口的性质,腰凸的数量(2—4个)和分布(2个位腹面,0—2个位背面)及腰褶的次生性质。据此,讨论了该类在多甲藻亚目中的系统位置。除修订本亚科所属的老属、种外,本文还描述了该亚科的2个新种和3个新形态型。并在回顾世界上非海相沟鞭藻的历史、阐述渤海藻亚科在地层中的产出及共生分子的基础上,结合其他地质、古生物证据,探讨了本亚科的古生态及它为多甲藻亚目中一支向淡水环境迁侈的先祖的可能性。     

四种鹤的胸骨和肩带骨比较

本文对国家一类保护动物丹顶鹤、白枕鹤、白头鹤、白鹤的胸骨与肩带骨进行了比较,阐明白鹤与鹤属的3种鹤在骨胳特征上的重要差别,进一步论证把白鹤从鹤属分离出来与肉垂鹤合为一个属是正确的。本文首次就胸骨和肩带骨特征提出4种鹤的检索表。文中附有胸骨和肩带骨的量度和12幅鹤的胸骨图。     

The role of the forelimb in prey capture in the Late Triassic reptile Megalancosaurus (Diapsida,Drepanosauromorpha)

The pectoral girdle and forelimb of the Late Triassic drepanosauromorph reptile Megalancosaurus are redescribed and their function reinterpreted. The whole skeleton of this diapsid is highly specialised for arboreal life, and also the peculiarities of the shoulder girdle and forelimb were interpreted as adaptations for a limb-based locomotion using gap-bridging to move from one support to another, as in chameleons. Re-examination of the pectoral girdle and forelimb revealed the presence of clavicles fused into a furcula-like structure, a saddle-shaped glenoid and a tight connection between the radius and ulna that strengthened the forearm but hindered pronation and supination movements at that joint. The new information plus a reconstruction of the pectoral and forelimb musculature suggests that the forelimb was also specialised for grasping and raking in addition to climbing and thus prey capture may have been an important function for the forelimb. The new functional interpretation fits well with the overall body architecture of Megalancosaurus’ skeleton, suggesting that this reptile was an ambush predator that may have assumed a stable tripodal position, secured by the hooked tail and hind limbs, freeing its forelimbs to catch prey by sudden extension of the arm and firm grasping with the pincer-like digits.     

A STRESS‐INDUCED PROTEIN ASSOCIATED WITH THE GIRDLE BAND REGION OF THE DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYTA)1

We report the characterization of a cell‐surface protein isolated from the centric diatom Thalassiosira pseudonana Hasle and Heimdal. This protein has an apparent molecular weight of 150 kDa, is highly acidic, and is intimately associated with the cell wall. Although originally identified in cells experiencing copper toxicity, it is also induced by silicon and iron limitation but not by phosphate or nitrate limitation. Using immunofluorescence techniques, the 150‐kDa protein was localized to the girdle band region and covered the elongated girdle band region of morphologically aberrant cells suffering from copper toxicity. Although having biochemical similarities to girdle band associated proteins identified in pennate diatoms known as pleuralins, the 150‐kDa protein is not a sequence homolog and is predicted to have a number of unique features, such as chitin binding domains and a possible RGD cell attachment motif. Results presented here suggest that this protein is normally cell cycle regulated and may be involved in stabilizing cells during the division process.     

SYNCHRONIZED GROWTH OF THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE) PROVIDES NOVEL INSIGHTS INTO CELL‐WALL SYNTHESIS PROCESSES IN RELATION TO THE CELL CYCLE1

Cell‐cycle effects in phytoplankton have both general and specific influences over a variety of cellular processes. Understanding these effects requires that the majority of cells in a culture are progressing through the same cell‐cycle stage, which requires synchronous growth. We report the development of a silicon starvation–recovery synchrony for the first diatom with a sequenced genome, Thalassiosira pseudonana Hasle et Heimdale, which provides several novel insights into the process of cell‐wall formation. After 24 h of silicate starvation, flow cytometry measurements indicated that 80% of the cells were arrested in the early G1 phase of the cell cycle and then upon silicate replenishment progressed synchronously through the cycle. An early G1‐arrest point was not previously documented in diatoms. After silicate replenishment, girdle‐band synthesis was confined to a particular period in G1, and cells did not lengthen in accordance with each girdle band added, which has implications related to cell growth and separation processes in diatoms. Measurements of silicic acid uptake, intracellular pools, and silica incorporation into the cell wall, coupled with fluorescence visualization of newly synthesized cell‐wall structures, provide the first direct measurements of silica amounts in individual girdle bands and valves in a diatom. Fluorescence imaging indicated why valves in T. pseudonana do not have to reduce in size with each generation and enabled visualization of intermediates in structure formation. The development of a synchrony procedure for T. pseudonana enables correlation of cellular events with the cell cycle, which should facilitate the use of genomic information.     

Postcranial remains of Baphetes and their bearing on the relationships of the Baphetidae (= Loxommatidae)

The first unequivocal postcranial remains of baphetids (= loxommatids) associated with skull roof and lower jaw material are reported from a specimen of Baphetes from the English Upper Carboniferous, Duckmantian. Characters of the mandible, including the incorporation in the symphysis of paired parasymphysial plates, permit the identification of a previously indeterminate jaw from the Langsettian (Westphalian A) of Nova Scotia, as baphetid. The postcranial remains include vertebrae, pectoral and pelvic limb and limb girdle elements that present a combination of unique characters extending the diagnosis of the family Baphetidae, together with plesiomophic and derived characters which suggest that baphetids are primitive stem group tetrapods.