Cloning, sequencing and mutational analysis of the cytochrome c552 gene (cycB) from Bradyrhizobium japonicum strain 110

We report the cloning and nucleotide sequence analysis of the cytochrome c552 gene (cycB) of Bradyrhizobium japonicum strain 110. The gene was identified with help of an oligonucleotide that was designed on the basis of the amino acid sequence determined for purified cytochrome c552 of B. japonicum strain CC705. The cycB gene product has an N-terminal 23-amino acid signal peptide that is missing in the mature cytochrome c552 protein. A B. japonicum cycB insertion mutant was constructed which had no observable phenotypic defects in denitrification and symbiotic nitrogen fixation. Thus, the function of c552 remains unknown.     

Biomass allocation and nutrient use in fast-growing woody and herbaceous perennials used for phytoremediation

This study assessed the suitability of two deciduous woody perennials (Salix spp. and Populus spp.) and two summer green herbaceous perennials (Phragmites australis and Urtica dioica) for purification of nutrient enriched wastewater. The main hypothesis tested was that species with a particular trait combination of high relative growth rate (RGR), low nutrient productivity (A) and high mean residence time (MRT) of nutrients would be most effective in accumulating nutrients. The nitrogen and phosphorus use efficiency at the whole plant level was analysed. Four treatments comprising two possible phytoremediation substrates (municipal wastewater and landfill leachate) and two control plant nutrition situations (balanced nutrient solution and pure water) were applied in four replications to the four plant species. Generally, all four species studied showed a high RGR and a low P productivity in the balanced nutrient solution treatment, while the opposite (low RGR and high P productivity) was seen in the phytoremediation substrate and pure water treatments. The general conclusion is that if P is present in marginal proportions in the wastewater, a vegetation filter with Phragmites would have an advantage since biomass and nutrient accumulation in Phragmites does not decrease as much during phytoremediation as that in deciduous woody perennials.     

Pollen productivity estimates and relevant source area of pollen for selected plant taxa in a pasture woodland landscape of the Jura Mountains (Switzerland)

Relevant source area of pollen (RSAP) and pollen productivity for 11 key taxa characteristic of the pasture woodland landscape of the Jura Mountains, Switzerland, were estimated using pollen assemblages from moss polsters at 20 sites. To obtain robust pollen productivity estimates (PPEs), we used vegetation survey data at a fine spatial-resolution (1 × 1 m²) and randomized locations for sampling sites, techniques rarely used in palynology. Three Extended R value (ERV) submodels and three distance-weighting methods for plant abundance calculation were applied. Different combinations of the submodels and distance-weighting methods provide slightly different estimates of RSAP and PPEs. Although ERV submodel 1 using 1/d (d = distance in meters) best fits the dataset, PPE values for heavy pollen types (e.g. Abies) were sensitive to the method used for distance-weighting. Taxon-specific distance-weighting methods, such as Prentice’s model, emphasize the intertaxonomic differences in pollen dispersal and deposition, and are thus theoretically sound. For the dataset obtained in this project, Prentice’s model was more appropriate than other distance-weighting methods to estimate PPEs. Most of the taxa have PPEs equal to (Fagus, Plantago media and Potentilla-type), or higher (Abies, Picea, Rubiaceae and Trollius europaeus) than Poaceae (PPE = 1). Acer, Cyperaceae, and Plantago montana-type are low pollen producers. This set of PPEs will be useful for reconstructing heterogeneous, mountainous pasture woodland landscapes from fossil pollen records. The RSAP for moss polsters in this semi-open landscape region is ca. 300 m.     

Influence of learning on range expansion and adaptation to novel habitats

Learning has been postulated to ‘drive’ evolution, but its influence on adaptive evolution in heterogeneous environments has not been formally examined. We used a spatially explicit individual‐based model to study the effect of learning on the expansion and adaptation of a species to a novel habitat. Fitness was mediated by a behavioural trait (resource preference), which in turn was determined by both the genotype and learning. Our findings indicate that learning substantially increases the range of parameters under which the species expands and adapts to the novel habitat, particularly if the two habitats are separated by a sharp ecotone (rather than a gradient). However, for a broad range of parameters, learning reduces the degree of genetically‐based local adaptation following the expansion and facilitates maintenance of genetic variation within local populations. Thus, in heterogeneous environments learning may facilitate evolutionary range expansions and maintenance of the potential of local populations to respond to subsequent environmental changes.     

Nutrient concentrations in tidal creeks as indicators of the water quality role of mangrove wetlands in Southwest Florida

Coastal mangroves have the potential to improve the water quality of urban and rural runoff before it is discharged into adjacent coastal bays and oceans; but they also can be impaired by excessive pollutants from upstream. Nutrients (phosphorus and nitrogen), salinity, and other water quality parameters were measured in five mangrove tidal creeks in different hydrogeomorphic and urbanization settings during high and low tides over a calendar year of wet (June and August 2015) and dry (February and April 2016) seasons in the Greater Naples Bay area in Southwest Florida, USA. Nutrient concentrations (ave. ± std error) in the tidal creeks were 0.055 ± 0.008 mg-P/L for total phosphorus (TP) and 0.610 ± 0.020 mg-N/L for total nitrogen (TN), with an average N:P ratio of 11.4:1. Average wet season TP (0.075 ± 0.010 mg-P/L) was significantly higher than the dry season TP (0.033 ± 0.003 mg-P/L; p < 0.01, f = 15.17, f_crit = 3.89) and the average wet season TN (0.75 ± 0.03 mg-N/L) was significantly higher than dry season TN (0.52 ± 0.02 mg/L; p < 0.01, f = 64.14, f_crit = 3.89), suggesting that urban stormwater runoff is directly or indirectly affecting the nutrient conditions in these mangroves. Significant differences in nutrient concentrations between low tide and high tide were not found for either TP (p = 0.43, f = .63, f_crit = 3.88) or TN (p = 0.20, f = 1.66, f_crit = 3.89). These differences were confirmed by a PCA and cluster analyses, which found differences to be seasonal. We could not conclude from these results whether these five mangrove wetlands were sources nor sinks of nutrients based simply on the measurement of nutrient concentrations. But we illustrated that nutrient concentrations were indicators of the mangroves’ hydrogeomorphic settings, their tidal fluxes from Naples Bay, and the Bay's upstream watersheds, and less by direct urban runoff.     

人工湿地脱除富营养化水体氮磷的研究进展

水体中氮磷营养物质不断积累,部分藻类及水生生物的过度繁殖,导致了水体的富营养化。水体富营养化防治的关键是减小水中氮、磷的含量。人工湿地是一项新型的废水处理技术,近年来在脱除富营养化水体氮磷中获得广泛研究和应用。本文在简述脱氮除磷机理的基础上,较系统地阐述了影响人工湿地脱除氮磷的因素及工艺的在改善水体富营养化的研究进展,以便在构建人工湿地中对各项因素综合考虑及兼顾利用,提高人工湿地修复富营养化水体的综合效能。     

烟气脱硫石膏对滨海农耕土壤磷素形态组成的影响

为探明不同烟气脱硫石膏施用量对滨海农耕土壤中的全磷、有效磷、无机磷组分等的影响,通过田间试验的方式,分别在试验区土壤中施加0t/hm~2、15t/hm~2、30t/hm~2、45t/hm~2烟气脱硫石膏。研究结果表明:与对照组相比,各处理组的土壤全磷含量无显著差异,而土壤中的有效磷和渗滤液中的可溶性磷含量则随着烟气脱硫石膏施入量的增加而降低;施入烟气脱硫石膏后农耕土壤中无机磷含量显著增加,其中又以磷酸钙盐含量的增加为主,磷酸钙盐中的Ca2-P、Ca_8-P和Ca_10-P含量分别增加了30.8%—68.9%、35.2%—66.3%和7.3%—17.8%。烟气脱硫石膏的施用促进了植物的生长发育,有效磷的降低和无机磷组分中磷酸钙盐的增加并未影响到植物对磷素的吸收。因此,烟气脱硫石膏能有效地固定滨海农耕土壤中的溶解态磷,控制土壤过量磷素向水体迁移,降低附近水体富营养化发生的机率,保障区域水体生态系统环境安全。     

Ferricyanide reductase of rose plasma membranes is regulated by nitrogen supply

Summary The ability of suspension-cultured rose (Rosa damascena Mill. cv Gloire de Guilan) cells to reduce ferricyanide is decreased by 50% during an overnight incubation in a low-nutrient (1 mM CaCl₂, 0.1 mM KCl) solution. This loss is not observed when nitrate and/or glutamate is added to the low-nutrient medium, but it occurs in medium containing all the components needed for normal growth except nitrate plus glutamate. Thus, the cells possess both constitutive and inducible enzymes for the reduction of ferricyanide, and nitrate or glutamate is both necessary and sufficient to stimulate the production of the inducible enzyme.     

Reversible coupling of individual phycobiliprotein isoforms during state transitions in the cyanobacterium Trichodesmium analysed by single-cell fluorescence kinetic measurements

In the non-heterocyst, marine cyanobacterium Trichodesmium nitrogen fixation is confined to the photoperiod and occurs coevally with oxygenic photosynthesis although nitrogenase is irreversibly inactivated by oxygen. In previous studies it was found that regulation of photosynthesis for nitrogen fixation involves Mehler reaction and various activity states with reversible coupling of photosynthetic components. We now investigated these activity states in more detail. Spectrally resolved fluorescence kinetic measurements of single cells revealed that they were related to alternate uncoupling and coupling of phycobilisomes from and to the photosystems, changing the effective cross-section of PSII. Therefore, we isolated and purified the phycobiliproteins of Trichodesmium via ion exchange chromatography and recorded their UV/VIS absorption, fluorescence excitation and fluorescence emission spectra. After describing these spectra by mathematical equations via the Gauss-Peak-Spectra method, we used them to deconvolute the in vivo fluorescence spectra of Trichodesmium cells. This revealed that the contribution of different parts of the phycobilisome antenna to fluorescence quenching changed during the daily activity cycle, and that individual phycobiliproteins can be reversibly coupled to the photosystems, while the expression levels of these proteins did not change much during the daily activity cycle. Thus we propose that variable phycobilisome coupling plays a key role in the regulation of photosynthesis for nitrogen fixation in Trichodesmium.     

Evidence for increases in vegetation species richness across UK Environmental Change Network sites linked to changes in air pollution and weather patterns

We analysed trends in vegetation monitored at regular intervals over the past two decades (1993–2012) at the twelve terrestrial Environmental Change Network (ECN) sites. We sought to determine the extent to which flora had changed and link any such changes to potential environmental drivers. We observed significant increases in species richness, both at a whole network level, and when data were analysed within Broad Habitat groupings representing the open uplands, open lowlands and woodlands. We also found comparable increases in an indicator of vegetation response to soil pH, Ellenberg R. Species characteristic of less acid soils tended to show more consistent increases in frequency across sites relative to species with a known tolerance for strongly acidic soils. These changes are, therefore, broadly consistent with a response to increases in soil solution pH observed for the majority of ECN sites that, in turn, are likely to be driven by large reductions in acid deposition in recent decades. Increases in species richness in certain habitat groupings could also be linked to increased soil moisture availability in drier lowland sites that are likely to have been influenced by a trend towards wetter summers in recent years, and possibly also to a reduction in soil nitrogen availability in some upland locations. Changes in site management are also likely to have influenced trends at certain sites, particularly with respect to agricultural practices. Our results are therefore indicative of widescale responses to major regional-scale changes in air pollution and recent weather patterns, modified by local management effects. The relative consistency of management of ECN sites over time is atypical of much of the wider countryside and it is therefore not appropriate to scale up these observations to infer national scale trends. Nevertheless the results provide an important insight into processes that may be operating nationally. It will now be necessary to test for the ubiquity of these changes using appropriate broader spatial scale survey data.