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1.
The regulation of intracellular Ca2 + triggers a multitude of vital processes in biological cells. Ca2 + permeable ryanodine receptors (RyRs) are the biggest known ion channels and play a key role in the regulation of intracellular calcium concentrations, particularly in muscle cells. In this study, we construct a computational model of the pore region of the skeletal RyR and perform molecular dynamics (MD) simulations. The dynamics and distribution of Ca2 + around the luminal pore entry of the RyR suggest that Ca2 + ions are channeled to the pore entry due to the arrangement of (acidic) amino acids at the extramembrane surface of the protein. This efficient mechanism of Ca2 + supply is thought to be part of the mechanism of Ca2 + conductance of RyRs. Viral myocarditis is predominantly caused by coxsackie viruses that induce the expression of the protein 2B which is known to affect intracellular Ca2 + homeostasis in infected cells. From our sequence comparison, it is hypothesized, that modulation of RyR could be due to replacement of its transmembrane domains (TMDs) by those domains of the viral channel forming protein 2B of coxsackie virus. This article is part of a Special Issue entitled: Viral Membrane Proteins — Channels for Cellular Networking. 相似文献
2.
Domenica Farci Matthew W. Bowler Joanna Kirkpatrick Sean McSweeney Enzo Tramontano Dario Piano 《生物化学与生物物理学报:生物膜》2014
We have analyzed the cell wall of the radio-resistant bacterium Deinococcus radiodurans. Unexpectedly, the bacterial envelope appears to be organized in different complexes of high molecular weight. Each complex is composed of several proteins, most of which are coded by genes of unknown function and the majority are constituents of the inner/outer membrane system. One of the most abundant complexes is constituted by the gene DR_0774. This protein is a type of secretin which is a known subunit of the homo-oligomeric channel that represents the main bulk of the type IV piliation family. Finally, a minor component of the pink envelope consists of several inner-membrane proteins. The implications of these findings are discussed. 相似文献
3.
Song Gao Yanling LiJiannan Zhang Hongman ChenDaming Ren Lijun ZhangYingfeng An 《Analytical biochemistry》2014
Here we describe a modified version of the digestion–ligation approach for efficient molecular cloning. In comparison with the original method, the modified method has the additional steps of gel purification and a second ligation after the first ligation of the linearized vector and DNA insert. During this process, the efficiency and reproducibility could be significantly improved for both stick-end cloning and blunt-end cloning. As an improvement of the very important molecular cloning technique, this method may find a wide range of applications in bioscience and biotechnology. 相似文献
4.
Internal Dynamics of Dynactin CAP-Gly Is Regulated by Microtubules and Plus End Tracking Protein EB1
Si Yan Huilan Zhang Guangjin Hou Shubbir Ahmed John C. Williams Tatyana Polenova 《The Journal of biological chemistry》2015,290(3):1607-1622
CAP-Gly domain of dynactin, a microtubule-associated activator of dynein motor, participates in multiple cellular processes, and its point mutations are associated with neurodegenerative diseases. Recently, we have demonstrated that conformational plasticity is an intrinsic property of CAP-Gly. To understand its origin, we addressed internal dynamics of CAP-Gly assembled on polymeric microtubules, bound to end-binding protein EB1 and free, by magic angle spinning NMR and molecular dynamics simulations. The analysis of residue-specific dynamics of CAP-Gly on time scales spanning nano- through milliseconds reveals its unusually high mobility, both free and assembled on polymeric microtubules. On the contrary, CAP-Gly bound to EB1 is significantly more rigid. Molecular dynamics simulations indicate that these motions are strongly temperature-dependent, and loop regions are surprisingly mobile. These findings establish the connection between conformational plasticity and internal dynamics in CAP-Gly, which is essential for the biological functions of CAP-Gly and its ability to bind to polymeric microtubules and multiple binding partners. In this work, we establish an approach, for the first time, to probe atomic resolution dynamic profiles of a microtubule-associated protein assembled on polymeric microtubules. More broadly, the methodology established here can be applied for atomic resolution analysis of dynamics in other microtubule-associated protein assemblies, including but not limited to dynactin, dynein, and kinesin motors assembled on microtubules. 相似文献
5.
3种滨藜属牧草苗期叶片解剖结构及生理特性对干旱的响应 总被引:1,自引:0,他引:1
通过盆栽控水试验,设置5个干旱胁迫水平,分别为最大田间持水量的80%(CK)、60%(轻度胁迫)、45%(中度胁迫)、30%(重度胁迫)、20%(极重度胁迫),并同步设计充足灌水后自然干旱实验,测定干旱胁迫对3种滨藜属牧草叶片形态解剖结构、叶片相对含水量、叶绿素含量、净光合速率、可溶性糖含量、质膜相对透性和丙二醛含量等生理生化指标的影响,以明确3种滨藜属牧草的抗旱特性,并探索其抗旱机理。结果表明:(1)3种滨藜属牧草均具有适应旱生环境的典型叶片结构特征,即在干旱胁迫条件下叶片组织结构形态表现为叶片栅栏组织逐渐变薄,而海绵组织在胁迫早期先变薄后增厚的现象,叶肉组织结构紧密度也出现了先降低后增高的规律。(2)随着干旱胁迫的加剧,叶片的可溶性糖含量增加,而其相对含水量减少,3种滨藜属牧草在土壤含水量很低的情况下叶片仍能保持高于52%的相对含水量。(3)在干旱胁迫下,3种滨藜属牧草叶片的叶绿素含量、净光合速率、气孔导度和蒸腾速率都发生显著变化,细胞膜受到的伤害程度有明显差异。(4)3种滨藜属牧草抗旱能力均较强,在干旱胁迫下其抗旱性综合表现为灰白滨藜变种1灰白滨藜变种2四翅滨藜。 相似文献
6.
《Bioorganic & medicinal chemistry》2014,22(11):2947-2954
A series of 2-styryl-5-nitroimidazole derivatives containing 1,4-benzodioxan moiety (3a–3r) has been designed, synthesized and their biological activities were also evaluated as potential antiproliferation and focal adhesion kinase (FAK) inhibitors. Among all the compounds, 3p showed the most potent activity in vitro which inhibited the growth of A549 with IC50 value of 3.11 μM and Hela with IC50 value of 2.54 μM respectively. Compound 3p also exhibited significant FAK inhibitory activity (IC50 = 0.45 μM). Docking simulation was performed for compound 3p into the FAK structure active site to determine the probable binding model. 相似文献
7.
In this paper, the author studies the quartic bioecology differential system:Here n and q are positive constants, l、m and p are constants. The author also proves some theorems of existence and uniqueness of limit cycles of this differential system. 相似文献
8.
Shukuro Araki Shigehiro Yi Tatsufumi Murakami Susumu Watanabe Shinichi Ikegawa Kiyoshi Takahashi Ken-ichi Yamarnura 《Molecular neurobiology》1994,8(1):15-23
To analyze the pathologic processes of amyloid deposition in type I familial amyloidotic polyneuropathy (FAP), mice were made
transgenic by introducing the human mutant transthyretin (TTR) gene(MT-hMet 30). An inbred strain of mouse, C57 BL/6, was
chosen. Transgenic mice were killed using ether anesthesia at 3-mo intervals up to 24 mo after birth. In these transgenic
mice, amyloid deposition started in the gastrointestinal tract, cardiovascular system, and kidneys and extended to various
other organs and tissues with advancing age. The pattern of amyloid deposition was similar to that observed in human autopsy
cases of FAP, except for its absence in the choroid plexus and in the peripheral and autonomic nervous systems.
We extracted the amyloid fibrils from kidneys of these mice with a human mutant TTR gene and analyzed them immunochemically
and electronmicroscopically. Deposited amyloid was shown to be composed of human mutant TTR and mouse serum amyloid P component.
Amyloid fibril from transgenic mice was morphologically and immunohistochemically similar to that of human FAP.
The most striking pathologic feature of the transgenic mice was the absence of amyloid deposition in the peripheral and autonomic
nervous tissues. Thus, other intrinsic factors may be involved in amyloid deposition in the nervous tissues of human FAP. 相似文献
9.
S. Salvadori R. Guerrini V. Forlani S. D. Bryant M. Attila L. H. Lazarus 《Amino acids》1994,7(3):291-304
Summary Analysis of deltorphin A position 4 analogues included: backbone constrained N
MeHis, spinacine (Spi), N
MePhe and the tetrahydroisoquinoline-3-carboxylic acid (Tic); spatially confined side-chain (Phg); and imidazole alkylation ofl- andd-His4 enantiomers. High selectivity was lost with the following replacements: N
MeHis4, N
MePhe4 and Phg4 reduced binding and the constrained residues also increasedµ binding; ring closure between the side-chain and amino group to yield Spi4 or Tic4 increasedµ affinity. Imidazole methylation of His4 marginally affected opioid binding and doubled selectivity; alkylatedd-His4-derivatives generally maintained selectivity in spite of decreased affinities. Thus, His4 imidazole preserves selectivity by facilitating high binding and by repulsion at theµ receptor. Several low energy conformers of deltorphin A indicated that the His4 imidazole preferred a spatial orientation parallel to the phenolic side-chain of Tyr1 suggestive that this conformation might contribute to high affinity and selectivity. 相似文献
10.
转基因微生物生态学及大田释放风险评价研究 总被引:15,自引:4,他引:11
向环境中释放转基因微生物可能会带来一系列的安全问题.在大面积释放之前必须对转基因微生物在环境中发生基因转移的潜力、存活能力、扩散能力及对生态系统的潜在影响等进行生态学研究和风险评价,同时还要探索有效的检测方法和风险评价策略.该研究有助于分子生态学的发展和生物技术的安全应用,具有重要的理论和实践意义. 相似文献