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This paper introduces the vectorial Kappa (κv) that one can utilize to assess congruence between two vectorial mosaics. The vectorial Kappa extends for vectorial mosaics the approach of the so-called Cohen's Kappa index, commonly used to compare raster mosaics. By comparing both approaches, we aim to demonstrate how efficient and convenient a vector-based congruence may be when working on vectorial mosaics. 相似文献
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Maria Tereza C. Thomé Kelly R. Zamudio Célio F. B. Haddad João Alexandrino 《Molecular ecology》2014,23(24):6152-6164
In this study, we investigated the relative contribution of geographic barriers and Pleistocene refuges in the diversification of the Rhinella crucifer species complex, a group of endemic toads with a widespread distribution in the Brazilian Atlantic Forest (AF). We used intensive sampling and multilocus DNA sequence data to compare nucleotide diversity between refuge and nonrefuge areas, investigate regional demographic patterns, estimate demographic parameters related to genetic breaks and test refuge versus barrier scenarios of diversification using approximate Bayesian computation. We did not find higher levels of genetic diversity in putative refuge areas, either at regional or biome scale. Rather, the demographic history of the species complex supports regional differences with moderate population growth in the north and central regions and stability in southern AF. Genetic breaks were dated to the Plio–Pleistocene; however, our analyses rejected the role of refuges in creating a northern and central divergence, supporting a recent colonization scenario at a smaller scale within the central AF. Overall, our data rule out massive climatically driven fragmentation and large‐scale recolonization events for populations across the biome. We confirmed the importance of geographic barriers in creating main divergences and underscored the importance of searching for cryptic discontinuities in the landscape. Comparison of our results with those of other AF taxa indicates organismal specific responses to moderate shifts in habitat and that multiple refuges may constitute a more realistic model for diversification of Atlantic Forest biota. 相似文献
4.
Douglas T. Bolger Karen H. Beard rew V. Suarez Ted J. Case 《Diversity & distributions》2008,14(4):655-665
Habitat fragmentation and invasive species often contribute to the decline of native taxa. Since the penetration of non‐native species into natural habitat may be facilitated by habitat fragmentation, it is important to examine how these two factors interact. Previous research documented that, in contrast to most other arthropod taxa, spiders increased in density and morphospecies richness with decreasing fragment area and increasing fragment age (time since insularization) in urban habitat fragments in San Diego County, California, USA. We tested whether a specific mechanism, an increase in non‐native species with fragmentation, is responsible for this pattern. We found that both native and non‐native taxa contributed to the pattern. Abundance of native spiders per pitfall trap sample increased significantly with decreasing fragment size (i.e. a negative density–area relationship) and abundance of non‐natives increased significantly with increasing fragment age. The proportion of non‐native individuals also increased significantly with age. One non‐native species, Oecobius navus, comprised the majority of non‐native individuals (82.2%) and a significant proportion of total individuals (25.1%). Richness of spider families per sample (family density) increased with fragment age due to an increase in the occurrence of non‐natives in older fragments, however, native family richness did not vary with age or area. Due to increasing dominance by non‐native and some native families, family evenness declined with decreasing fragment size and increasing fragment age. Native and non‐native abundance covaried positively arguing against strong negative interactions between the two groups. O. navus had a strong positive association with another common non‐native arthropod, the Argentine ant (Linepitheme humile), suggesting a possible direct interaction. In contrast, abundance of native spiders was negatively correlated with Argentine ant abundance. We hypothesize that fragmentation in this semiarid habitat increases productivity in smaller and older fragments enhancing the density of both native and non‐native taxa. 相似文献
5.
Loss of mitofusin 2 links beta‐amyloid‐mediated mitochondrial fragmentation and Cdk5‐induced oxidative stress in neuron cells 下载免费PDF全文
Junghyung Park Hoonsung Choi Ju‐Sik Min Bokyung Kim Sang‐Rae Lee Jong Won Yun Myung‐Sook Choi Kyu‐Tae Chang Dong‐Seok Lee 《Journal of neurochemistry》2015,132(6):687-702
Mitochondrial dysfunction is implicated in age‐related degenerative disorders such as Alzheimer's disease (AD). Maintenance of mitochondrial dynamics is essential for regulating mitochondrial function. Aβ oligomers (AβOs), the typical cause of AD, lead to mitochondrial dysfunction and neuronal loss. AβOs have been shown to induce mitochondrial fragmentation, and their inhibition suppresses mitochondrial dysfunction and neuronal cell death. Oxidative stress is one of the earliest hallmarks of AD. Cyclin‐dependent kinase 5 (Cdk5) may cause oxidative stress by disrupting the antioxidant system, including Prx2. Cdk5 is also regarded as a modulator of mitochondrial fission; however, a precise mechanistic link between Cdk5 and mitochondrial dynamics is lacking. We estimated mitochondrial morphology and alterations in mitochondrial morphology‐related proteins in Neuro‐2a (N2a) cells stably expressing the Swedish mutation of amyloid precursor protein (APP), which is known to increase AβO production. We demonstrated that mitochondrial fragmentation by AβOs accompanies reduced mitofusin 1 and 2 (Mfn1/2) levels. Interestingly, the Cdk5 pathway, including phosphorylation of the Prx2‐related oxidative stress, has been shown to regulate Mfn1 and Mfn2 levels. Furthermore, Mfn2, but not Mfn1, over‐expression significantly inhibits the AβO‐mediated cell death pathway. Therefore, these results indicate that AβO‐mediated oxidative stress triggers mitochondrial fragmentation via decreased Mfn2 expression by activating Cdk5‐induced Prx2 phosphorylation.
6.
The alteration of natural tree species composition is defined as the deviation of the current tree species composition from that of the natural state. It can be used as a measure of human influence on forest vegetation, and thus as an indicator of the naturalness of forest vegetation. The aim of the study was to develop a standard procedure for estimating the alteration of natural tree species composition, to explain factors driving alteration and to examine its significance for susceptibility of forest stands to natural disturbances. The alteration of natural tree species composition was estimated for the Dinaric region (5556 km2, Slovenia) by the Robič Index of Dissimilarity (RID), ranging from 0 (completely natural) to 100 (completely altered). The index was calculated on the compartment level (24 ha each on average) with data on current and potential natural forest vegetation. The influence of human activities on tree species alteration was examined by using topographic and accessibility variables. The susceptibility of forest stands to natural disturbances was analysed with data on sanitary felling. In the study area, the natural tree species composition of forest stands is moderately preserved; the average value of RID was 50.05, ranging from 1.76 to 100, and the coefficient of variation was 0.49. The alteration of the natural tree species composition of forest stands is primarily the result of forest management and past land use, conditioned either by topography or accessibility of forests. The degree of alteration of tree species composition decreased along the gradients of rockiness, inclination and elevation. A greater degree of alteration appeared on the slopes of intermediate and south facing aspects than on north facing slopes, and in areas that were closer to the forest edge. A higher level of alteration significantly increases the susceptibility of forest stands to natural disturbances. The procedure represents a novel approach in modelling the alteration (naturalness) of tree species composition of forest vegetation. It is applicable at different spatial scales and fosters an understanding of the patterns of tree species composition under the influence of human activity across forest landscapes. 相似文献
7.
The effects of historical fragmentation on major histocompatibility complex class II β and microsatellite variation in the Aegean island reptile,Podarcis erhardii 下载免费PDF全文
Trent Santonastaso Jackie Lighten Cock van Oosterhout Kenneth L. Jones Johannes Foufopoulos Nicola M. Anthony 《Ecology and evolution》2017,7(13):4568-4581
The major histocompatibility complex (MHC) plays a key role in disease resistance and is the most polymorphic gene region in vertebrates. Although habitat fragmentation is predicted to lead to a loss in MHC variation through drift, the impact of other evolutionary forces may counter this effect. Here we assess the impact of selection, drift, migration, and recombination on MHC class II and microsatellite variability in 14 island populations of the Aegean wall lizard Podarcis erhardii. Lizards were sampled from islands within the Cyclades (Greece) formed by rising sea levels as the last glacial maximum approximately 20,000 before present. Bathymetric data were used to determine the area and age of each island, allowing us to infer the corresponding magnitude and timing of genetic bottlenecks associated with island formation. Both MHC and microsatellite variation were positively associated with island area, supporting the hypothesis that drift governs neutral and adaptive variation in this system. However, MHC but not microsatellite variability declined significantly with island age. This discrepancy is likely due to the fact that microsatellites attain mutation‐drift equilibrium more rapidly than MHC. Although we detected signals of balancing selection, recombination and migration, the effects of these evolutionary processes appeared negligible relative to drift. This study demonstrates how land bridge islands can provide novel insights into the impact of historical fragmentation on genetic diversity as well as help disentangle the effects of different evolutionary forces on neutral and adaptive diversity. 相似文献
8.
Planning connectivity at multiple scales for large mammals in a human-dominated biodiversity hotspot
Connectivity for large mammals across human-altered landscapes results from movement by individuals that can be described via nested spatial scales as linkages (or zones or areas) with compatible land use types, constrictions that repeatedly funnel movement (as corridors) or impede it (as barriers), and the specific paths (or routes) across completely anthropogenic features (such as highways). Mitigation to facilitate animal movement through such landscapes requires similar attention to spatial scale, particularly when they involve complex topography, diverse types of human land use, and transportation infrastructure. We modeled connectivity for Asian elephant (Elephas maximus) and gaur (Bos gaurus) in the Shencottah Gap, a multiple-use region separating two tiger reserves in the Western Ghats, India. Using 840 km of surveys for animal signs within a region of 621 km2, we modeled landscape linkages via resource selection functions integrated across two spatial resolutions, and then potential dispersal corridors within these linkages using circuit theoretical models. Within these corridors, we further identified potential small-scale movement paths across a busy transportation route via least-cost paths and evaluated their viability. Both elephants and gaur avoided human-dominated habitat, resulting in broken connectivity across the Shencottah Gap. Predicted corridor locations were sensitive to analysis resolution, and corridors derived from scale-integrated habitat models correlated best with habitat quality. Less than 1% of elephant and gaur detections occurred in habitat that was poorer in quality than the lowest-quality component of the movement path across the transportation route, suggesting that connectivity will require habitat improvement. Only 28% of dispersal corridor area and 5% of movement path length overlapped with the upper 50% quantile of the landscape linkage; thus, jointly modeling these three components enabled a more nuanced evaluation of connectivity than any of them in isolation. 相似文献
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Semi-natural habitats in agricultural landscapes are generally assumed to enhance the biological control of insect pests based on native beneficial insects, by providing alternative prey and hosts, resources and refuges for overwintering. We hypothesized that natural enemies of winter wheat aphids should arrive sooner in fields near semi-natural habitats. We compared aphid, hoverfly (larvae and eggs) and parasitized aphid (mummies) abundances in 54 winter wheat fields located in southern France from 2003 to 2007. Six surveys were recorded each spring and were split into the early period (defined as the period before the peak of aphid growth) and the late period (after the peak). The wheat fields differed by their surrounding landscape composition measured as the proportion of semi-natural habitats (woods, hedges and grasslands), at three different spatial scales: 200 m, 500 m, and 1200 m. Despite great variability in abundance data between years, the abundance of hoverflies appeared more sensitive to landscape composition than aphid abundance was. Early abundance for both aphids and hoverflies was positively related to wood cover, but not late abundance in spring. The abundance of hoverflies was positively related to hedge and grassland cover at all spatial scales and both periods considered. Aphid parasitism was higher near hedges at the small spatial scale late in the spring. Our results confirmed that higher proportions of semi-natural habitats in agricultural landscapes enhance the biological control of pests, but this effect depends on the spatial scale, the time period in the spring and the natural enemies considered. 相似文献