Shade tolerance and herbivory are associated with RGR of tree species via different functional traits

• Relative growth rate (RGR) plays an important role in plant adaptation to the light environment through the growth potential/survival trade‐off. RGR is a complex trait with physiological and biomass allocation components. It has been argued that herbivory may influence the evolution of plant strategies to cope with the light environment, but little is known about the relation between susceptibility to herbivores and growth‐related functional traits.
• Here, we examined in 11 evergreen tree species from a temperate rainforest the association between growth‐related functional traits and (i) species’ shade‐tolerance, and (ii) herbivory rate in the field. We aimed at elucidating the differential linkage of shade and herbivory with RGR via growth‐related functional traits.
• We found that RGR was associated negatively with shade‐tolerance and positively with herbivory rate. However, herbivory rate and shade‐tolerance were not significantly related. RGR was determined mainly by photosynthetic rate (A_max) and specific leaf area (SLA). Results suggest that shade tolerance and herbivore resistance do not covary with the same functional traits. Whereas shade‐tolerance was strongly related to A_max and to a lesser extent to leaf mass ratio (LMR) and dark respiration (R_d), herbivory rate was closely related to allocation traits (SLA and LMR) and slightly associated with protein content.
• The effects of low light on RGR would be mediated by A_max, while the effects of herbivory on RGR would be mediated by SLA. Our findings suggest that shade and herbivores may differentially contribute to shape RGR of tree species through their effects on different resource‐uptake functional traits.

     

Physiological function as regulation of large transcriptional programs: the cellular response to genotoxic stress

The responses to ionizing radiation and other genotoxic environmental stresses are complex and are regulated by a number of overlapping molecular pathways. One such stress signaling pathway involves p53, which regulates the expression of over 100 genes already identified. It is also becoming increasingly apparent that the pattern of stress gene expression has some cell type specificity. It may be possible to exploit these differences in stress gene responsiveness as molecular markers through the use of a combined informatics and functional genomics approach. The techniques of microarray analysis potentially offer the opportunity to monitor changes in gene expression across the entire set of expressed genes in a cell or organism. As an initial step in the development of a functional genomics approach to stress gene analysis, we have recently demonstrated the utility of cDNA microarray hybridization to measure radiation-stress gene responses and identified a number of previously unknown radiation-regulated genes. The responses of some of these genes to DNA-damaging agents vary widely in cell lines from different tissues of origin and different genetic backgrounds. While this again highlights the importance of a cellular context to genotoxic stress responses, it also raises the prospect of expression-profiling of cell lines, tissues, and tumors. Such profiles may have a predictive value if they can define regions of ‘expression space’ that correlate with important endpoints, such as response to cancer therapy regimens, or identification of exposures to environmental toxins.     

funrar: An R package to characterize functional rarity

Emphasis has been put in recent ecological research on investigating phylogenetic, functional and taxonomic facets of biological diversity. While a flourishing number of indices have been proposed for assessing functional diversity, surprisingly few options are available to characterize functional rarity. Functional rarity can play a key role in community and ecosystem dynamics. We introduce here the funrar R package to quantify functional rarity based on species trait differences and species frequencies at local and regional scales. Because of the increasing availability of big datasets in macroecology and biogeography, we optimized funrar to work with large datasets of thousands of species and sites. We illustrate the use of the package to investigate the functional rarity of North and Central American mammals.     

Distribution of plant functional types along gradients of disturbance intensity and resource supply in an agricultural landscape

Abstract. In this study, plant functional types are understood as groups of plants with similar biological traits displaying significant optima or maxima on a gradient plane of resource supply and disturbance intensity. The biological traits refer to expansion, vegetative regeneration, generative reproduction, dispersal and seed bank longevity. 129 vegetation samples were taken in an agricultural landscape in southwestern Germany, covering a wide range of terrestrial vegetation types – but with the exception of forests and wetlands. For each site, also soil data were recorded. Mean daily soil moisture was estimated with a simple model. Soil moisture, balanced nitrogen supply and available phosphorus were combined into a factor ‘resource supply’. In addition, disturbance intensity was estimated for each site. This factor was based on (1) frequency of disturbance, (2) disturbance depth below or above the soil surface, and (3) proportion of the area affected by a discrete disturbance event. 30 plant groups with similar biological characteristics resulted from a cluster analysis, based on a compilation of 19 biological traits for a regional species pool. Logistic regression on a gradient plane of disturbance intensity and resource supply yielded response curves for 28 groups. The dependent variable was defined as the probability of encountering all members of a group in a sample. 17 groups display a significant response curve on the gradient plane. Plants with a potential for long- range dispersal are concentrated on sites with low or high disturbance intensities (e.g. fallow land, fields, lawns). On sites with medium disturbance intensity (e.g. meadows) and low to medium resource supply, small-range dispersal predominates. There are no distinct trends concerning seed bank longevity. The potential for vertical and lateral expansion increases with decreasing disturbance intensity. Only at medium disturbance intensities does vertical expansion correlate positively with resource supply. Rapid detachment of daughter individuals occurs more often on productive sites than on less productive sites. Diversity of groups with similar biological traits is highest on sites with medium disturbance intensities.