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排序方式: 共有5193条查询结果,搜索用时 15 毫秒
1.
It is a long-standing question as to which genes define the characteristic facial features among different ethnic groups. In this study, we use Uyghurs, an ancient admixed population to query the genetic bases why Europeans and Han Chinese look different. Facial traits were analyzed based on high-dense 3D facial images; numerous biometric spaces were examined for divergent facial features between European and Han Chinese, ranging from inter-landmark distances to dense shape geometrics. Genome-wide association studies(GWAS) were conducted on a discovery panel of Uyghurs. Six significant loci were identified, four of which, rs1868752, rs118078182, rs60159418 at or near UBASH3B, COL23A1, PCDH7 and rs17868256 were replicated in independent cohorts of Uyghurs or Southern Han Chinese. A prospective model was also developed to predict 3D faces based on top GWAS signals and tested in hypothetic forensic scenarios.  相似文献   
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Protein docking is essential for structural characterization of protein interactions. Besides providing the structure of protein complexes, modeling of proteins and their complexes is important for understanding the fundamental principles and specific aspects of protein interactions. The accuracy of protein modeling, in general, is still less than that of the experimental approaches. Thus, it is important to investigate the applicability of docking techniques to modeled proteins. We present new comprehensive benchmark sets of protein models for the development and validation of protein docking, as well as a systematic assessment of free and template-based docking techniques on these sets. As opposed to previous studies, the benchmark sets reflect the real case modeling/docking scenario where the accuracy of the models is assessed by the modeling procedure, without reference to the native structure (which would be unknown in practical applications). We also expanded the analysis to include docking of protein pairs where proteins have different structural accuracy. The results show that, in general, the template-based docking is less sensitive to the structural inaccuracies of the models than the free docking. The near-native docking poses generated by the template-based approach, typically, also have higher ranks than those produces by the free docking (although the free docking is indispensable in modeling the multiplicity of protein interactions in a crowded cellular environment). The results show that docking techniques are applicable to protein models in a broad range of modeling accuracy. The study provides clear guidelines for practical applications of docking to protein models.  相似文献   
4.
Modeling soil detachment rates at the regional scale is important for better understanding of the processes of erosion and the development of erosion models. Soil erodibility is an important factor for predicting soil loss, but its direct measurement at the watershed scale is difficult, time-consuming and costly. This study used stepwise multiple-linear regression (MLR) and artificial neural networks (ANNs) to model Water Erosion Prediction Project (WEPP) soil erodibility parameters, including the baseline inter-rill erodibility (Kib), baseline rill erodibility (Krb) and critical shear stress (τcb) of cropland conditions in calcareous soils of northwest Iran. Simulated inter-rill and rill erosion experiments were conducted at 100 locations with three replications. Kib, Krb and τcb and basic soil properties were measured at each location. Auxiliary variables related to soil erodibility were derived from a Landsat 7 satellite image and a 30 m × 30 m digital elevation model (DEM). MLR and ANN models were employed to predict Kib, Krb and τcb using two groups of input variables: i) more easily measurable basic soil properties (pedo-transfer functions (PTFs)) and ii) more easily measurable basic soil properties and auxiliary data (soil spatial prediction functions (SSPFs)). The results indicated that the WEPP models performed poorly in comparison to the derived models. PTFs and SSPFs generated from ANN models provided more reliable predictions than the MLR models. ANN-based SSPF models yielded the best results (with the highest R2 and lowest RMSE values) for predicting Kib and Krb. ANN-based PTF model performed reasonably well for predicting τcb. These results show that information from terrain attributes and remote sensing data are potential auxiliary variables for improving prediction of soil erodibility parameters.  相似文献   
5.
  • Relative growth rate (RGR) plays an important role in plant adaptation to the light environment through the growth potential/survival trade‐off. RGR is a complex trait with physiological and biomass allocation components. It has been argued that herbivory may influence the evolution of plant strategies to cope with the light environment, but little is known about the relation between susceptibility to herbivores and growth‐related functional traits.
  • Here, we examined in 11 evergreen tree species from a temperate rainforest the association between growth‐related functional traits and (i) species’ shade‐tolerance, and (ii) herbivory rate in the field. We aimed at elucidating the differential linkage of shade and herbivory with RGR via growth‐related functional traits.
  • We found that RGR was associated negatively with shade‐tolerance and positively with herbivory rate. However, herbivory rate and shade‐tolerance were not significantly related. RGR was determined mainly by photosynthetic rate (Amax) and specific leaf area (SLA). Results suggest that shade tolerance and herbivore resistance do not covary with the same functional traits. Whereas shade‐tolerance was strongly related to Amax and to a lesser extent to leaf mass ratio (LMR) and dark respiration (Rd), herbivory rate was closely related to allocation traits (SLA and LMR) and slightly associated with protein content.
  • The effects of low light on RGR would be mediated by Amax, while the effects of herbivory on RGR would be mediated by SLA. Our findings suggest that shade and herbivores may differentially contribute to shape RGR of tree species through their effects on different resource‐uptake functional traits.
  相似文献   
6.
Assigning functional information to hypothetical proteins in virus genomes is crucial for gaining insight into their proteomes. Human adenoviruses are medium sized viruses that cause a range of diseases. Their genomes possess proteins with uncharacterized function known as hypothetical proteins. Using a wide range of protein function prediction servers, functional information was obtained about these hypothetical proteins. A comparison of functional information obtained from these servers revealed that some of them produced functional information, while others provided little functional information about these human adenovirus hypothetical proteins. The PFP, ESG, PSIPRED, 3d2GO, and ProtFun servers produced the most functional information regarding these hypothetical proteins.  相似文献   
7.
Genotypes with extreme phenotypes are valuable for studying ‘difficult’ quantitative traits. Genomic prediction (GP) might allow the identification of such extremes by phenotyping a training population of limited size and predicting genotypes with extreme phenotypes in large sequences of germplasm collections. We tested this approach employing seedling root traits in maize and the extensively genotyped Ames Panel. A training population made up of 384 inbred lines from the Ames Panel was phenotyped by extracting root traits from images using the software program aria . A ridge regression best linear unbiased prediction strategy was used to train a GP model. Genomic estimated breeding values for the trait ‘total root length’ (TRL) were predicted for 2431 inbred lines, which had previously been genotyped by sequencing. Selections were made for 100 extreme TRL lines and those with the predicted longest or shortest TRL were validated for TRL and other root traits. The two predicted extreme groups with regard to TRL were significantly different (= 0.0001). The difference in predicted means for TRL between groups was 145.1 cm and 118.7 cm for observed means, which were significantly different (= 0.001). The accuracy of predicting the rank between 1 and 200 of the validation population based on TRL (longest to shortest) was determined using a Spearman correlation to be ρ = 0.55. Taken together, our results support the idea that GP may be a useful approach for identifying the most informative genotypes in sequenced germplasm collections to facilitate experiments for quantitative inherited traits.  相似文献   
8.
中国梧桐属(Firmiana)在世界梧桐属中占比较大,且除梧桐外其余种均为中国特有且分布范围狭窄的植物种,灭绝风险大,研究气候变化对中国梧桐属树种的影响对于维护生物多样性具有重要的意义。结合多时期第六次国际气候耦合模式比较计划(CMIP6)气候变量数据和中国八种梧桐属树种的分布数据,基于R语言kuenm程序包优化的最大熵(Maxent)模型模拟分析中国八种梧桐属树种在多尺度下的潜在适生区,得出梧桐属最适宜的模拟尺度、潜在适生区的面积变化和迁移方向、梧桐属多样性保护关键区域及保护空缺。结果表明:(1)梧桐属最适宜的模拟尺度为亚洲;(2) Maxent模型的接收者操作特征曲线下面积(AUC)值均大于0.9,表明模型对梧桐属潜在适生区预测结果具有较高准确度;(3)气候变化影响下除云南梧桐(Firmiana major)外其它树种的潜在适生区都将在未来有所扩大;(4)中国八种梧桐属树种潜在适生区迁移方向主要为东西向,南北向大跨度迁移较少,纬度变化不大;(5)丹霞梧桐(Firmiana danxiaensis)的稳定潜在适生区最小;(6)中国梧桐属多样性保护关键区域主要分布于广西壮族自治区及云南、广东、海南等省区;(7)中国梧桐属多样性保护空缺区域主要分布于广西壮族自治区中部及海南省北部;(8)梧桐属多样性保护关键区域正在为人造地表所侵蚀。研究分析气候变化对中国八种梧桐属树种的影响及其潜在适生区变化、中国梧桐属多样性保护状态,可为中国梧桐属建立多样性保护廊道提供相关建议,为制定多样性保护规划及相应措施提供参考。  相似文献   
9.
大尺度估算森林生物量一直是人们关注的焦点,而构建林分水平的生物量模型是一种估算森林乔木层生物量的方法。本研究基于聚合法1、聚合法2、平差法、分解法构建红松人工林林分生物量模型,并对比分析4种可加性方法的预测精度,为黑龙江省红松人工林的生物量预测提供科学依据。各模型均使用权函数来消除各模型的异方差,并以留一交叉验证法(LOOCV)作为各模型的检验方法。结果表明: 平差法的整体预测能力略优于聚合法1、聚合法2和分解法,预测精度排序为平差法>聚合法1>聚合法2>分解法;分别对比不同林分断面积的预测能力时,4种可加性方法的预测精度不一致。当红松人工林的林分断面积分布于0~10或50~60 m2·hm-2区间时,建议采用分解法的参数估计值,而林分断面积分布于其他区间时,建议采用平差法的参数估计值。  相似文献   
10.
1. Semi-arid rangeland productivity is limited by precipitation, and yet droughts are projected to increase in frequency and duration with unknown impacts on insect populations. As some katydids prolong diapause and remain in an egg bank as a blastoderm for multiple growing seasons, is it possible that drought could prolong diapause and promote outbreaks by synchronising embryonic development and hatching of Mormon crickets, Anabrus simplex, after moisture is restored? 2. In this study, a high-elevation Wyoming population (WY) was compared with a mid-elevation Idaho (ID) and a low-elevation Oregon population (OR). It was predicted that eggs from the drier ID and OR habitats would be more tolerant of desiccation. Developmental state and water loss of eggs were measured after drought treatments, and when moisture was restored. 3. The two drier treatments had significantly more WY eggs prolonging diapause until after drought ended compared with the two wetter treatments. Whether WY eggs developed in the second or subsequent warm periods was independent of drought treatments. Significantly fewer OR embryos developed in the driest treatment compared with the others, whereas almost all ID eggs developed irrespective of the drought treatment. 4. In conclusion, Mormon crickets can delay embryonic development to improve drought tolerance. Although drought did not synchronise development and hatching, diapause plasticity allowed insects to cope and await more favourable conditions. 5. Unexpectedly, eggs from WY (the highest, wettest site) were more tolerant, because postponing development resulted in less water loss than in developed embryos. OR egg loss was also reduced by prolonging diapause, relative to ID, which developed in even the driest conditions.  相似文献   
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