The effects of manipulation of sedimentary iron and organic matter on sediment biogeochemistry and seagrasses in a subtropical carbonate environment

The microbial metabolism of organic matter (OM) in seagrass beds can create sulfidic conditions detrimental to seagrass growth; iron (Fe) potentially has ameliorating effects through titration of the sulfides and the precipitation of iron-sulfide minerals into the sediment. In this study, the biogeochemical effects of Fe availability and its interplay with sulfur and OM on sulfide toxicity, phosphorous (P) availability, seagrass growth and community structure were tested. The availability of Fe and OM was manipulated in a 2 × 2 factorial experiment arranged in a Latin square, with four replicates per treatment. The treatments included the addition of Fe, the addition of OM, the addition of both Fe and OM as well as no addition. The experiment was conducted in an oligotrophic, iron-deficient seagrass bed. Fe had an 84.5% retention efficiency in the sediments with the concentration of Fe increasing in the seagrass leaves over the course of the experiment. Porewater chemistry was significantly altered with a dramatic decrease in sulfide levels in Fe addition plots while sulfide levels increased in the OM addition treatments. Phosphorus increased in seagrass leaves collected in the Fe addition plots. Decreased sulfide stress was evidenced by heavier δ³⁴S in leaves and rhizomes from plots to which Fe was added. The OM addition negatively affected seagrass growth but increased P availability; the reduced sulfide stress in Fe added plots resulted in elevated productivity. Fe availability may be an important determinant of the impact that OM has on seagrass vitality in carbonate sediments vegetated with seagrasses.     

Seasonal growth of Atlantic cod: effects of temperature, feeding and reproduction

Growth of 2659 Atlantic cod Gadus morhua aged 4 to 9 years examined in Placentia Bay, Newfoundland, peaked in most cases in June and was at a minimum in October or November. Water temperature, partial fullness index ( I _P) and gonado‐somatic index ( I _G) explained between 31 and 52% of the monthly variability in growth. Temperature and I _P of capelin Mallotus villosus had significant effects on growth of all age groups and explained most of the variance for ages 6–8 and 4–5 years, respectively. The I _P of large invertebrates (ages 4 to 7 years), sandlance ( Ammodytes sp. age 6 years) and demersal fishes (age 9 years) had age‐specific effects in the model. Overall, amphipods, decapods and echinoderms dominated the Atlantic cod diet in most seasons, but fish consumption by Atlantic cod was high in June and July, particularly on capelin. The rapid increase in somatic mass during June and July occurred despite cold water temperatures ( < 3° C at 50 m) and moderate to high gonado‐somatic index. The findings of this study suggest that when food was not a limiting factor, growth tended to increase even when Atlantic cod occupied colder waters, but when food was limiting, the opposite may have occured.     

Mercury contamination and stable isotopes reveal variability in foraging ecology of generalist California gulls

Environmental contaminants are a concern for animal health, but contaminant exposure can also be used as a tracer of foraging ecology. In particular, mercury (Hg) concentrations are highly variable among aquatic and terrestrial food webs as a result of habitat- and site-specific biogeochemical processes that produce the bioaccumulative form, methylmercury (MeHg). We used stable isotopes and total Hg (THg) concentrations of a generalist consumer, the California gull (Larus californicus), to examine foraging ecology and illustrate the utility of using Hg contamination as an ecological tracer under certain conditions. We identified four main foraging clusters of gulls during pre-breeding and breeding, using a traditional approach based on light stable isotopes. The foraging cluster with the highest δ¹⁵N and δ³⁴S values in gulls (cluster 4) had mean blood THg concentrations 614% (pre-breeding) and 250% (breeding) higher than gulls with the lowest isotope values (cluster 1). Using a traditional approach of stable-isotope mixing models, we showed that breeding birds with a higher proportion of garbage in their diet (cluster 2: 63–82% garbage) corresponded to lower THg concentrations and lower δ¹⁵N and δ³⁴S values. In contrast, gull clusters with higher THg concentrations, which were more enriched in ¹⁵N and ³⁴S isotopes, consumed a higher proportion of more natural, estuarine prey. δ³⁴S values, which change markedly across the terrestrial to marine habitat gradient, were positively correlated with blood THg concentrations in gulls. The linkage we observed between stable isotopes and THg concentrations suggests that Hg contamination can be used as an additional tool for understanding animal foraging across coastal habitat gradients.     

Recovery of the Chesapeake Bay Bald Eagle Nesting Population

Abstract We conducted annual aerial surveys throughout the tidal reach of the Chesapeake Bay, USA, between 1977 and 2001 to estimate population size and reproductive performance for bald eagles (Haliaeetus leucocephalus). The population increased exponentially from 73 to 601 pairs with an average doubling time of 8.2 years. Annual population increase was highly variable and exhibited no indication of any systematic decline. A total of 7,590 chicks were produced from 5,685 breeding attempts during this period. The population has exhibited tremendous forward momentum such that >50% of young produced over the 25-year period were produced in the last 6 years. Rapid population growth may reflect the combined benefits of eliminating persistent biocides and active territory management. Reproductive rate along with associated success rate and average brood size increased throughout the study period. Average reproductive rate (chicks/breeding attempt) increased from 0.82 during the first 5 years of the survey to 1.50 during the last 5 years. Average success rate increased from 54.4% to >80.0% during the same time periods. The overall population will likely reach saturation within the next decade. The availability of undeveloped waterfront property has become the dominant limiting factor for bald eagles in the Chesapeake Bay. Maintaining the eagle population in the face of a rapidly expanding human population will continue to be the greatest challenge faced by wildlife biologists.     

珠江口伶仃洋中华白海豚栖息地利用对海岸线等变迁的响应

沿岸鲸豚类栖息地易受人类活动的干扰，导致其分布和核心栖息地发生变化。珠江口-漠阳江口中华白海豚种群是目前所知全球范围内最大的种群，其中伶仃洋水域是其重要的栖息地。近年来，珠江口伶仃洋周边城市发展带来的人类活动增加，白海豚的生存压力日益增大，分析伶仃洋中华白海豚对栖息地环境变化的响应，研究对应的保护策略显得非常迫切。以多源陆地资源卫星Landsat为数据源，通过影像分析近43年珠江口伶仃洋围填海造成的海域流失，结合近20年来采用截线抽样法收集的海豚观测数据，运用含障碍核插值（Kernel interpolation with barriers）方法，分析白海豚的分布及核心栖息地的变化。结果显示：1986-2015年期间，研究区域内流失的海域面积为344.08km²；目击分布离人工海岸线的平均距离大于自然海岸线的平均距离，目击分布到自然海岸线和人工海岸线的平均距离均在减小，表明过去20年白海豚的栖息地使用选择发生了一些变化，被迫适应人类活动的干扰；1997-2016年白海豚的分布范围呈现先增加后减小，白海豚栖息地使用的重心偏向伶仃洋东部水域，核心栖息地趋向主航道和无人海岛附近水域萎缩，可能是海豚因海域食物资源减少而迫不得已的选择。不同时期，珠江口中华白海豚国家级自然保护区所覆盖的核心栖息地比例呈递减趋势，占比由79.9%下降到49.4%，当前有必要对保护区范围和功能区作出一些优化调整，以适应栖息地使用的变化格局。     

Morphological indices and otolith microstructure of Atlantic croaker,Micropogonias undulatus,as indicators of habitat quality along an estuarine pollution gradient

Synopsis Atlantic croaker, Micropogonias undulatus, sampled from a transect along a pollution gradient show a trend of declining growth and physical condition. This trend is apparent in the mean size of 0-group croaker, in their recent growth rate measured by marginal otolith increment widths, in longer term growth rate as indicated by relative otolith weights, and in general physical condition as measured by an index of condition of the caudal fin. We suggest that these measures are indicators of stress associated with environmental conditions. Because croaker from different positions along the pollution gradient were distinguishable, it appears that they remain for extended periods within areas of degraded environmental quality.     

Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation

Monterey Bay, CA is an Eastern boundary upwelling system that is nitrogen limited much of the year. In order to resolve population dynamics of microorganisms important for nutrient cycling in this region, we deployed the Environmental Sample Processor with quantitative PCR assays targeting both ribosomal RNA genes and functional genes for subclades of cyanobacteria (Synechococcus) and ammonia-oxidizing Archaea (Thaumarchaeota) populations. Results showed a strong correlation between Thaumarchaea abundances and nitrate during the spring upwelling but not the fall sampling period. In relatively stratified fall waters, the Thaumarchaeota community reached higher numbers than in the spring, and an unexpected positive correlation with chlorophyll concentration was observed. Further, we detected drops in Synechococcus abundance that occurred on short (that is, daily) time scales. Upwelling intensity and blooms of eukaryotic phytoplankton strongly influenced Synechococcus distributions in the spring and fall, revealing what appear to be the environmental limitations of Synechococcus populations in this region. Each of these findings has implications for Monterey Bay biogeochemistry. High-resolution sampling provides a better-resolved framework within which to observe changes in the plankton community. We conclude that controls on these ecosystems change on smaller scales than are routinely assessed, and that more predictable trends will be uncovered if they are evaluated within seasonal (monthly), rather than on annual or interannual scales.     

Method for the appraisal of anthropogenic disturbance of macrozoobenthic communities of soft substrata

A method for quantitative appraisal of disturbances of macrobenthic communities of soft substrata caused by anthropogenic pollution is proposed. This method is based on the establishment of the dependence of various parameters characterizing the abundance and structure of communities (biomass, population density, number of species, Shannon-Weaver and Pielou indices, etc.) on the level of total contamination of bottom sediments. Using the percentage of deviation of abundance parameters and ecological indices from the norm (the initial horizontal segment of model curves), as well as ERL _q and ERM _q values, which limit the area of progressive degradation of bottom communities (an almost linear drop in abundance and structure characters), is suggested as a numerical characteristic of such deformations. Mapping of aqueous areas on the basis of these characteristics enabled us to obtain a synoptic view of the extent and spatial scale of anthropogenic impacts. An example of the application of this method for assessment of the state of benthic communities in the Peter the Great Bay (Sea of Japan) is shown for the end of the 1980s. The method is verified on the basis of comparison with the results obtained by standard methods of appraisal of the ecological status of macrozoobenthic communities.     

Distribution of Karlodinium veneficum in the coastal region of Xiangshan Bay in the East China Sea,as detected by a real-time quantitative PCR assay of ribosomal ITS sequence

Athecate dinoflagellate Karlodinium veneficum is a universal toxic species possessing karlotoxins recognized especially as ichthyotoxic as well as cytotoxic and hemolytic. Blooms of K. veneficum, both single-species or accompanied with other species, occurred more frequently worldwide in recent years, including the coastal region of China. Normally, K. veneficum present in relatively low abundance in phytoplankton communities in estuary regions. Being small and difficult to identify with light microscopy, it has been ignored for a long time till its blooming and toxins being confirmed. How it presents in background level and what is its relationship with critical geological and hydrological environment factors are basically not clear. In this study, the paper reports the application of a real-time quantitative PCR (qPCR) method to investigate the abundance and distribution of K. veneficum in the coastal waters of Xiangshan Bay in the East China Sea (ECS), a typical bay area of harmful algae blooms and heavily affected by anthropogenic activities. The real-time qPCR assay came out being an efficient method at detecting even low cell densities of K. veneficum of different genotypes. A total of 38 field samples of surface (0.5 m) and bottom water (9–100 m in depth) were analyzed and 12 samples were found positive for K. veneficum. At least 3 genotypes of K. veneficum present in this region. Temperatures in sites of K. veneficum positive ranged from 21.7 to 23.4 °C, and salinity levels were between 21.1 and 26.3. The K. veneficum distributed quite extensively in the waters of Xiangshan Bay, cell abundance varied from a low of 4 cells/L to a maximum of 170 cells/L. Most of the samples containing K. veneficum were collected from bottom water in different sites. At three of the 19 sampling sites, K. veneficum was detected in both surface and bottom water samples. Especially at sampling site near Beilun port, where the water is typically muddy with low transparency, relative high cell numbers of K. veneficum were found in both surface and bottom waters. Mixotrophy and vertical migration of K. veneficum could be important eco-physiological factors to consider in terms of understanding these distribution characteristics. The ideal conditions for K. veneficum growth and aggregation in this area still needs further study.     

Trends in Dinophysis abundance and diarrhetic shellfish toxin levels in California mussels (Mytilus californianus) from Monterey Bay,California

Diarrhetic shellfish toxins (DSTs) are produced by the marine dinoflagellate, Dinophysis, as well as select species of benthic Prorocentrum. The DSTs can bioaccumulate in shellfish and cause gastrointestinal illness when humans consume high levels of this toxin. Although not routinely monitored throughout the U.S., recent studies in Washington, Texas, and New York suggest DSTs may be widespread throughout U.S. coastal waters. This study describes a four-year time series (2013–2016) of Dinophysis concentration and DST level in California mussels (Mytilus californianus) from Santa Cruz Municipal Wharf (SCMW) in Monterey Bay, California. Results show a maximum Dinophysis concentration of 9404 cells/L during this study and suggest Dinophysis persists as a member of the background phytoplankton community throughout the year. In California mussels, DSTs were found at persistent low levels throughout the course of this study, and exceeded the FDA guidance level of 160 ng/g 19 out of 192 weeks sampled. Concentrations of Dinophysis alone are a positive but weak predictor of DST level in California mussels, and basic environmental variables (temperature, salinity, and nutrients) do not sufficiently explain variation in Dinophysis concentration at SCMW. This study demonstrates that Dinophysis in Monterey Bay are producing DSTs that accumulate in local shellfish throughout the year, occasionally reaching levels of concern.