Anthropogenically driven habitat formation by a tube dwelling diatom on the Northern Patagonian Atlantic coast

The tube dwelling diatom Berkeleya rutilans (Trentepohl) Grunow plays a key role as early colonizer and bloom former in coastal zones. Exuding large quantities of extracellular polymeric substances (EPS), it can form dense colonies in mucilaginous macroscopic branches, containing thousands of cells. Due to their pronounced three dimensional growths of its mucilaginous structures, it supports a variety of organisms and traps grains and detritus, which makes it an important habitat former and ecosystem engineer, contributing to sediment stabilization, which is a crucial issue in sedimentary areas. In the present study we investigated the identity and structural morphology of B. rutilans, blooming in a tidal channel in Northern Patagonia (S40° 43′ W64° 56′) and experimentally tested its potential physiological responses (e.g. growth rate) to nutrient elevation. The observed morphological plasticity and measured high growth rates under nutrient exposure make B. rutilans a likely indicator for eutrophication in sedimentary marine habitats. As to our knowledge the present study provides the first record of B. rutilans for Argentinean waters, we discussed the potential reasons for its occurrence and evaluated the ecological impacts of its presence. Due to the observed high colonization capability and rapid response to environmental alterations (e.g. eutrophication, substrate changes) it seems to benefit from human activities, which will consequently favor its further expansion within the disturbed area.     

Analyses of landuse change impacts on catchment runoff using different time indicators based on SWAT model

Previous researches mainly focused on the runoff responses to landuse change based on annual, seasonal or monthly time scales, there are few studies based on daily scale. We conducted a comprehensive investigation into runoff responses on the daily scale as well as annual and monthly time scales using SWAT, and compared the impacts of time scales with different time indicators quantitatively. Jinjiang, a coastal catchment of southeast China with a humid sub-tropical climate, was used for simulations. A calibrated SWAT model produced satisfactory reproduction of annual, monthly and daily runoff processes over a nine-year (2002–2010) period at three gauging stations. Runoff was then simulated and compared using the same meteorological input but two different landuse scenarios (1985 and 2006, with reduced forest and increased cropland and urbanized area). The results showed varying change in runoff among three time scales and three catchments. The annual runoff had the smallest increase between two scenarios, monthly runoffs had medium rates (increasing in all months except October–November), and daily runoff had the largest rates with the increase in flood peaks but decrease in drought flows, because of the variable influence on interception/evapotranspiration loss, percolation and antecedent soil water storage. Indicators of different time scales (annual runoff, monthly runoff, maximum 1-day and 5-day flood runoff, minimum 1-day and 7-day runoff) proved appropriate for analysing landuse change impacts.     

Both facilitation and limiting similarity shape the species coexistence in dry alkali grasslands

Facilitation is an important driver of community assembly, and often overwhelms the effect of competition in stressed habitats. Thus, net effect of biotic interactions is often positive in stressed grasslands, where dominant species and litter can protect the subordinate species. Besides facilitation, niche partitioning can also support species coexistence leading to limiting similarity between subordinate species. Our aim was to provide a detailed analysis of fine-scale biotic interactions in stressed alkali grasslands. We supposed, that there are positive relationships between the main biomass fractions and species richness. We expected the expansion of trait ranges and the increase of trait dissimilarity with increasing biomass scores (total litter, green biomass of dominant species) and species richness. We studied the relationships between main biomass fractions, species richness, functional diversity and functional trait indices (ranges, weighted means and Rao indices). We used fine-scale biomass sampling in nine stands of dry alkali grasslands dominated by Festuca pseudovina. The detected relationships were always positive between the main biomass fractions (green biomass of dominant species, total litter and green biomass of subordinate species) and species richness. We found that the green biomass of dominant species and total litter increased ranges and dissimilarity of functional traits. Our results suggest that in dry alkali grasslands facilitation is crucial in shaping vegetation composition. The green biomass of dominant species and total litter increased the biomass production of subordinate species leading to overyielding. We found that mechanisms of facilitation and limiting similarity were jointly shaping the species coexistence in stressed grasslands, such as alkali grasslands.     

Preventive supplementation with fresh and preserved peach attenuates CCl4-induced oxidative stress,inflammation and tissue damage

The present study was elaborated to comparatively evaluate the preventive effect of different peach-derived products obtained from preserved fruits (Syrup and Preserve Pulp Peach [PPP]) and from fresh peels and pulps (Peel and Fresh Pulp Peach [FPP]) in a model of liver/renal toxicity and inflammation induced by carbon tetrachloride (CCl₄) in rats. Tissue damage (carbonyl, thiobarbituric acid reactive species and sulfhydril), antioxidant enzymes activity (catalase and superoxide dismutase) and inflammatory parameters [tumor necrosis factor (TNF)-α and interleukin (IL)-1β levels, and receptor for advanced glycation end-products (RAGE) and nuclear factor (NF)κB-p65 immunocontent] were investigated. Our findings demonstrated that Peel, PPP and FPP (200 or 400 mg/kg) daily administration by oral gavage for 30 days conferred a significant protection against CCl₄-induced antioxidant enzymes activation and, most importantly, oxidative damage to lipids and proteins as well as blocked induction of inflammatory mediators such as TNF-α, IL-1β, RAGE and NFκB. This antioxidant/anti-inflammatory effect seems to be associated with the abundance of carotenoids and polyphenols present in peach-derived products, which are enriched in fresh-fruit-derived preparations (Peel and FPP) but are also present in PPP. The Syrup — which was the least enriched in antioxidants — displayed no protective effect in our experiments. These effects cumulated in decreased levels of transaminases and lactate dehydrogenase leakage into serum and maintenance of organ architecture. Therefore, the herein presented results show evidence that supplementation with peach products may be protective against organ damage caused by oxidative stress, being interesting candidates for production of antioxidant-enriched functional foods.     

Small molecule mimetics of an interferon-α receptor interacting domain

Small molecules that mimic IFN-α epitopes that interact with the cell surface receptor, IFNAR, would be useful therapeutics. One such 8-amino acid region in IFN-α2, designated IRRP-1, was used to derive 11 chemical compounds that belong to 5 distinct chemotypes, containing the molecular features represented by the key residues Leu30, Arg33, and Asp35 in IRRP-1. Three of these compounds exhibited potential mimicry to IRRP-1 and, in cell based assays, as predicted, effectively inhibited IFNAR activation by IFN-α. Of these, compound 3 did not display cell toxicity and reduced IFN-α-inducible STAT1 phosphorylation and STAT-DNA binding. Based on physicochemical properties’ analyses, our data suggest that moieties with acidic pKa on the small molecule may be a necessary element for mimicking the carboxyl group of Asp35 in IRRP-1. Our data confirm the relevance of this strategy of molecular mimicry of ligand–receptor interaction domains of protein partners for small molecule drug discovery.     

Differences in tissue-specific lipid composition between embryos of wild and captive breeding alligators (Alligator mississippiensis)

Fertile eggs obtained from alligators reared in captivity typically exhibit high rates of embryonic mortality. Also, the fatty acid composition of the yolk lipid of the captive eggs is markedly different from that observed in eggs from wild alligators, possibly as a result of differences in maternal diet in the two situations. The fatty acid compositions of tissue lipids during the embryonic development of wild and captive alligators were compared. The lipids of liver, adipose tissue and heart of the two types of embryo displayed fatty acid profiles which generally reflected the acyl compositions of the respective yolks. Thus the lipids from these tissues of the captive embryos contained markedly higher proportionate levels of linoleic and linolenic acids, lower levels of palmitoleic acid, and, in general, lower levels of docosahexaenoic acid and other C20 and C22 polyunsaturates, in comparison to the values for the wild embryos. In contrast, the fatty acid composition of the brain phosphoglycerides was very similar in the two types of embryo. Thus, at least in those embryos which had survived during the developmental period studied, the brain was able to maintain a relatively constant fatty acid composition, in spite of major differences between the wild and captive eggs in the proportions of the various fatty acids supplied from the yolk. It is suggested that a major cause of embryonic mortality in the captive embryos could be a failure to maintain an adequate level of docosahexaenoic acid in the developing brain.     

Mutational analysis of slyD, an Escherichia coli gene encoding a protein of the FKBP immunophilin family

slyD encodes a 196 amino acid polypeptide that is a member of the FKBP family of cis–trans peptidyl–prolyl isomerases (PPIases). slyD mutations affect plaque formation by the phage φX174 by blocking the action of the phage lysis protein E. Here we describe the selection of a set of spontaneous slyD mutations conferring resistance to the expression of gene E from a plasmid. These mutations occur disproportionately in residues of SlyD that, based on the structure of the prototype mammalian FKBP12, make ligand contacts with immunosuppressing drug molecules or are conserved in other FKBP proteins. A wide variation in the plating efficiency of φX174 on these E  ^R strains is observed, relative to the parental, indicating that these alleles differ widely in residual SlyD activity. Moreover, it is found that slyD mutations cause significant growth rate defects in Escherichia coli B and C backgrounds. Finally, overexpression of slyD causes filamentation of the host. Thus, among the FKBP genes found in organisms across the evolutionary spectrum, slyD is unique in having three distinct drug-independent phenotypes.