Flow intermittency decreases nestedness and specialisation of diatom communities in Mediterranean rivers

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Comparison of soil organic matter dynamics at five temperate deciduous forests with physical fractionation and radiocarbon measurements

Forest soils represent a significant pool for carbon sequestration and storage, but the factors controlling soil carbon cycling are not well constrained. We compared soil carbon dynamics at five broadleaf forests in the Eastern US that vary in climate, soil type, and soil ecology: two sites at the University of Michigan Biological Station (MI-Coarse, sandy; MI-Fine, loamy); Bartlett Experimental Forest (NH-BF); Harvard Forest (MA-HF); and Baskett Wildlife Recreation and Education Area (MO-OZ). We quantified soil carbon stocks and measured bulk soil radiocarbon to at least 60 cm depth. We determined surface (0–15 cm) soil carbon distribution and turnover times in free light (unprotected), occluded light (intra-aggregate), and dense (mineral-associated) soil fractions. Total soil carbon stocks ranged from 55 ± 4 to 229 ± 42 Mg C ha^?1 and were lowest at MI-Coarse and MO-OZ and highest at MI-Fine and NH-BF. Differences in climate only partly explained differences in soil organic matter ¹⁴C and mean turnover times, which were 75–260 year for free-light fractions, 70–625 year for occluded-light fractions, and 90–480 year for dense fractions. Turnover times were shortest at the warmest site, but longest at the northeastern sites (NH-BF and MA-HF), rather than the coldest sites (MI-Coarse and MI-Fine). Soil texture, mineralogy, drainage, and macrofaunal activity may be at least as important as climate in determining soil carbon dynamics in temperate broadleaf forests.     

Purification and in vitro refolding of maize chloroplast transglutaminase over-expressed in Escherichia coli

In contrast to mammalian transglutaminases (TGs), plant members of the superfamily are poorly characterized. In order to produce pure and active TG for its functional and structural studies, variants of maize chloroplast transglutaminase (TGZ, Patent WWO03102128) were sub-cloned into a pET28 vector and overexpressed in Escherichia coli BL21 (DE3) cells. The recombinant proteins were present mainly as insoluble inclusion bodies. The TGZ4p variant with four B-type repeats (M _r∼55 kDa), was affinity purified from urea-solubilized inclusion bodies. TGZ4p was refolded by rapid dilution in a Ca²⁺- and guanidine-containing buffer. Active TGZ4p shows the general catalytic characteristics described for other TGs. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Long term decomposition: the influence of litter type and soil horizon on retention of plant carbon and nitrogen in soils

How plant inputs from above- versus below-ground affect long term carbon (C) and nitrogen (N) retention and stabilization in soils is not well known. We present results of a decade-long field study that traced the decomposition of ¹³C- and ¹⁵N-labeled Pinus ponderosa needle and fine root litter placed in O or A soil horizons of a sandy Alfisol under a coniferous forest. We measured the retention of litter-derived C and N in particulate (>2 mm) and bulk soil (<2 mm) fractions, as well as in density-separated free light and three mineral-associated fractions. After 10 years, the influence of slower initial mineralization of root litter compared to needle litter was still evident: almost twice as much root litter (44% of C) was retained than needle litter (22–28% of C). After 10 years, the O horizon retained more litter in coarse particulate matter implying the crucial comminution step was slower than in the A horizon, while the A horizon retained more litter in the finer bulk soil, where it was recovered in organo-mineral associations. Retention in these A horizon mineral-associated fractions was similar for roots and needles. Nearly 5% of the applied litter C (and almost 15% of the applied N) was in organo-mineral associations, which had centennial residence times and potential for long-term stabilization. Vertical movement of litter-derived C was minimal after a decade, but N was significantly more mobile. Overall, the legacy of initial litter quality influences total SOM retention; however, the potential for and mechanisms of long-term SOM stabilization are influenced not by litter type but by soil horizon.     

Embryogenesis induction in petals of Araujia sericifera

The embryogenic capacity of Araujia sericifera petals and some of the factors involved in the induction of embryos was investigated. The influence of 6-benzyladenine and α-naphthalene acetic acid, light intensity (90 or 5 μmol m^-2 s^-1) and silver thiosulphate (inhibitor of ethylene action) were studied. It was found that petals are an easy system in which to induce somatic embryogenesis. Plants were recovered from somatic embryos. Although 6-benzyladenine is essential for inducing an efficient response, a high dosage increased callogenesis and reduced embryogenesis. The highest rate of embryogenesis is induced with high light intensity (90–100 μmol m^-2 s^-1), even though the presence of silver thiosulphate in the medium markedly reduced embryo induction. This revised version was published online in June 2006 with corrections to the Cover Date.     

Erosional redistribution of topsoil controls soil nitrogen dynamics

In recent years, the role of soil erosion on terrestrial carbon sequestration had been the focus of a growing number of studies. However, relatively little attention has been paid so far to the role of erosion on the lateral distribution of soil nitrogen (N) and the role of geomorphic processes on soil N dynamics. Here, we present primary data on the stock of nitrogen in soil and its rate of erosion at a relatively undisturbed, zero-order watershed in northern California. Erosion transports 0.26–0.47 g N m^?2 year^?1 from eroding slope positions (Summit and Slope), and about two-thirds of the eroded N enters depositional landform positions (Hollow and Plain). Our results show that depositional-position soil profiles contain up to 3 times more N than soil profiles in the eroding positions. More than 92% of all soil nitrogen was chemically bound to soil minerals in all the landform positions, compared to 2–4% each found in the free light and occluded light fractions. Nitrogen associated with the free light fraction in topsoil is particularly susceptible to loss by soil erosion. By comparison, soil N associated with the aggregate-protected occluded light fractions and the mineral-associated dense fractions is likely to be protected from gaseous and dissolved losses. On average, we found that soil N has mean residence time of 694 years in eroding landform positions, compared to 2951 years in depositional landform positions. Our results also show that microbial processing of organic matter exerts strong control on overall soil N storage and N stabilized through sorptive interactions with soil minerals only in poorly drained depositional landform positions. Soil erosion exerts important control on stock, distribution, and long-term fate of soil N in dynamic landscapes.     

Heart rate during exercise with leg vascular occlusion in spinal cord-injured humans.

Feed-forward and feedback mechanisms are both important for control of the heart rate response to muscular exercise, but their origin and relative importance remain inadequately understood. To evaluate whether humoral mechanisms are of importance, the heart rate response to electrically induced cycling was studied in participants with spinal cord injury (SCI) and compared with that elicited during volitional cycling in able-bodied persons (C). During voluntary exercise at an oxygen uptake of approximately 1 l/min, heart rate increased from 66 +/- 4 to 86 +/- 4 (SE) beats/min in seven C, and during electrically induced exercise at a similar oxygen uptake in SCI it increased from 73 +/- 3 to 110 +/- 8 beats/min. In contrast, blood pressure increased only in C (from 88 +/- 3 to 99 +/- 4 mmHg), confirming that, during exercise, blood pressure control is dominated by peripheral neural feedback mechanisms. With vascular occlusion of the legs, the exercise-induced increase in heart rate was reduced or even eliminated in the electrically stimulated SCI. For C, heart rate tended to be lower than during exercise with free circulation to the legs. Release of the cuff elevated heart rate only in SCI. These data suggest that humoral feedback is of importance for the heart rate response to exercise and especially so when influence from the central nervous system and peripheral neural feedback from the working muscles are impaired or eliminated during electrically induced exercise in individuals with SCI.