Restriction fragment length polymorphisms as genetic markers in soybean,Glycine max (L.) merrill

Summary Restriction Fragment Length Polymorphisms (RFLP) have been identified between widely distant cultivars (Minsoy and Noir 1 ) of soybean Glycine max (L.) Merrill. Using as probes randomly chosen clones of DNA, one in five probes revealed a polymorphism. More than half of these polymorphisms appear to result from rearrangements of the genomic DNA. Twenty seven markers were analyzed for linkage in F₂ plants. Eleven of these markers were contained in four linkage groups. Five cultivars were compared in a search for new alleles. When RFLP markers corresponding to low copy DNA were used to analyze three other cultivars — Sooty, Forrest and Mandarin (Ottawa) — few new alleles were found. Using these probes, five different markers could be used to differentiate the five cultivars. Complex probes, which correspond to repeated DNA, revealed different polymorphisms in different cultivars and a single such probe could be used to distinguish the five cultivars from each other.     

对小麦顶生小穗的初步研究

1.顶生小穗的护颖具有特殊的形态,第二护颖常为小花外稃状,腋内有时还保留着雌雄蕊或内稃残余。说明其不稳定和可变的本质。2.顶生小穗具特殊的坐落位置,其小穗轴与主穗轴一致。顶生小穗原始体发生在穗生长锥顶端,其下无苞原始体,长成后也无小穗领。其护颖和小花外稃与侧生小穗下的小穗领呈严格连续互生状态。说明其一次轴的渊源。3.顶生小穗护颖腋内可长出小穗,小花也可代之以小穗,护颖和小花外稃有时以苞片的形式保留于新侧生小穗外侧。新顶生小穗的护颖来自小花外稃。说明顶生小穗护颖腋内的退化花芽、外稃腋内的小花与侧生小穗都是花序一次轴上的二次轴分枝。4.顶生小穗产生小穗的变异严格按自下而上的顺序进行,与原侧生小穗有严格的连续性。5.事实证明,顶生小穗是一次轴花序,它属于穗状花序顶端的可变部分。     

Sampling strategies for using female gametophytes to estimate heterozygosity in conifers

Summary Unbiased estimators of genotype and allele frequencies and their respective variances are obtained for loci identified by mendelian segregation in haploid female gametophytes from individual trees. By a minimum sampling variance criterion, the allocation of experimental effort between the number of female gametophytes analysed per tree and the number of trees sampled per population is examined for a fixed total amount of experimental effort. For estimating heterozygosity, the optimum sampling design for many (generally most) cases is three female gametophytes per tree, but may be more than three depending upon the true genotype frequencies in the population. For estimating allele frequencies, the optimum sampling design is one female gametophyte per tree except in cases where a strong negative correlation exists between alleles within genotpyes. Guidelines are discussed for determining a suitable number of female gametophytes to be analysed per tree in order to estimate heterozygosity.     

Host Specificity and Morphometrics of Four Populations of Heterodera glycines (Nematoda: Heteroderidae)

Four populations of Heterodera glycines from four different states differed considerably in numbers of adult females developed on five resistant soybean cultivars, mungbean and lespedeza. Differences were observed also in body, tail and tail terminus lengths of second-stage larvae. No attempt was made to assign these populations to recognized races, and it is suggested that race designations should be applied only to representative samples of field populations and not to selected greenhouse populations or isolates.     

From footprint morphometrics to the stature of fossil hominins: A common but uncertain estimate

Hominin footprints are a particular remain in paleoanthropology representing brief moments of life of extinct individuals. Footprints not only provide information on the locomotor behavior of fossil taxa but also on their body characteristics such as their stature. This stature is usually estimated from the length of the footprints based on the well-known foot length to stature ratio. However, footprint length does not result only from the foot length but of a combination of factors. Therefore, it is necessary to investigate the relationships between footprint length and stature of individuals using experimental approaches. Secondly, recent discoveries of fossil footprints have led to the estimation of statures from isolated footprints. However, such estimates may be biased because of the intraindividual morphometric variation of the footprints. Moreover, footprints may also be incomplete making it impossible to measure the length and therefore the estimation of a stature. The search for relationships between stature and other morphometric variables is therefore necessary to have the most accurate picture possible of the individuals who left these tracks. In this context, this article reports the results of an experimental study that aims to determine the relationships between the stature of individuals and different morphometric variables and to quantify the intraindividual variation of each variable. Thus, 21 morphometric variables were measured on a total of 175 experimental footprints left by 20 individuals in an experimental area composed of loose sand. Statistical analyses show that footprint lengths are not only the variables most correlated with stature but also those with the least intraindividual variation. However, estimation of stature from footprints left by fossil hominins is subject to three types of uncertainties: residuals from linear regression, intraindividual variation that can be particularly large in soft substrates, and the application of relationships defined on modern populations to fossil taxa.     

Analysis of the tryptic search space in UniProt databases

In this article, we provide a comprehensive study of the content of the Universal Protein Resource (UniProt) protein data sets for human and mouse. The tryptic search spaces of the UniProtKB (UniProt knowledgebase) complete proteome sets were compared with other data sets from UniProtKB and with the corresponding International Protein Index, reference sequence, Ensembl, and UniRef100 (where UniRef is UniProt reference clusters) organism‐specific data sets. All protein forms annotated in UniProtKB (both the canonical sequences and isoforms) were evaluated in this study. In addition, natural and disease‐associated amino acid variants annotated in UniProtKB were included in the evaluation. The peptide unicity was also evaluated for each data set. Furthermore, the peptide information in the UniProtKB data sets was also compared against the available peptide‐level identifications in the main MS‐based proteomics repositories. Identifying the peptides observed in these repositories is an important resource of information for protein databases as they provide supporting evidence for the existence of otherwise predicted proteins. Likewise, the repositories could use the information available in UniProtKB to direct reprocessing efforts on specific sets of peptides/proteins of interest. In summary, we provide comprehensive information about the different organism‐specific sequence data sets available from UniProt, together with the pros and cons for each, in terms of search space for MS‐based bottom‐up proteomics workflows. The aim of the analysis is to provide a clear view of the tryptic search space of UniProt and other protein databases to enable scientists to select those most appropriate for their purposes.     

分子标记所揭示的人工合成小麦与推广品种杂交后代中出现的新变异

杂交和多倍化是小麦进化和遗传分化的重要途径,新变异的产生为人工选育小麦新品种提供了物质基础。本文选用了分布于小麦A、B、D基因组的92个SSR标记对硬粒小麦-节节麦人工合成小麦衍生材料川W5436（CW5436）及其双亲人工合成小麦Syn786（♀）和绵阳26（My26（♂））进行了遗传分析,结果表明：人工合成小麦的各等位基因并不是按盂德尔遗传的规律传递到后代中;川W5436与双亲比较在1个SSR位点上发生了川W5436所特有的新变异,主要表现在新型DNA片段的增加,即W5436出现了双亲不具有的特殊条带。表明人工合成小麦与普通小麦杂交过程中通过人工选择的压力使双亲的遗传物质产生了偏态分离而且微卫星序列发生了改变。本文对杂交转育中SSR位点遗传分化在小麦进化中的作用等问题进行了讨论。     

我国麻疹病毒流行株的H和N基因变异速率探讨

从GenBank检索并下载了我国近40年的麻疹病毒血凝素蛋白(H)和核蛋白(N)的全基因组序列,用Bioedit7.0软件对参考株和代表株进行序列比对,并进行氨基酸进化树的构建,进一步从氨基酸层面分析麻疹流行株的变化速率。结果显示麻疹病毒H蛋白发生的变异,表现为近十年的变异率(1.33×10-3)大约为前三十年变异率(0.95×10-3)的1.4倍,而N蛋白发生的变异,表现为近些年的变异率(1.90×10-3)大约为前三十年变异率(1.01×10-3)的1.8倍。本研究结果提示麻疹病毒近年变异率有增快的趋势,今后需加强对麻疹病毒基因型变异和演变的监测。     

Demographic stochasticity versus spatial variation in the competition between fast and slow dispersers

Dispersal is an important strategy that allows organisms to locate and exploit favorable habitats. The question arises: given competition in a spatially heterogeneous landscape, what is the optimal rate of dispersal? Continuous population models predict that a species with a lower dispersal rate always drives a competing species to extinction in the presence of spatial variation of resources. However, the introduction of intrinsic demographic stochasticity can reverse this conclusion. We present a simple model in which competition between the exploitation of resources and stochastic fluctuations leads to victory by either the faster or slower of two species depending on the environmental parameters. A simplified limiting case of the model, analyzed by closing the moment and correlation hierarchy, quantitatively predicts which species will win in the complete model under given parameters of spatial variation and average carrying capacity.     

Discriminative proprieties of Vary and Repeat contingencies

Pigeons were trained on an arbitrary matching-to-sample task in which Vary and Repeat contingencies served as sample stimuli. During the sample component, two keys were lit red and a four-peck sequence was reinforced if its frequency was less than a certain threshold (Vary sample) or if it comprised one of two target sequences (Repeat sample). During the comparison component, two keys were lit white and green, and correct choices depended on the previous sample contingency. Pigeons learned to emit high and low variability levels during the sample, and correct matching choices were obtained. In two discrimination testing phases, the requirement of variation (Vary sample) or of repetition (Repeat sample) was parametrically manipulated such that behavioral variability became undifferentiated between samples (low sample disparity) and then differentiated (high sample disparity) again. Accurate choices fell to chance under low sample disparity conditions, but improved under high disparity conditions. The results provide evidence that high and low variability levels can be produced in the absence of antecedent cues and that pigeons can accurately report whether they had experienced a Vary or a Repeat contingency, thus indicating that those contingencies may serve discriminative functions.