Trichopodiella faurei n. sp. (Ciliophora,Phyllopharyngea, Cyrtophoria): Morphological Description and Phylogenetic Analyses Based on SSU rRNA and Group I Intron Sequences

ABSTRACT. A new marine cyrtophorian ciliate Trichopodiella faurei n. sp., which belongs to the order Dysteriida, family Hartmannulidae, was investigated at the morphological and molecular levels. A combination of morphological features of the organism including the oval body shape, 2–3 contractile vacuoles, 22–28 nematodesmal rods in the cytopharyngeal basket, and 31–39 somatic kineties, distinguishes it from all other known congeners. In reconstructed small subunit (SSU) rRNA phylogenies, T. faurei groups with Isochona, a representative genus of the subclass Chonotrichia. The similarity of the infraciliature between hartmannulids and several chonotrichian examples also suggests that these taxa should be closely related. A new S943 intron belonging to group IC1 was identified in the SSU rRNA gene of this species. This intron is phylogenetically related to the S891 introns previously found in the suctorians Acineta sp. and Tokophrya lemnarum, and their internal guide sequences share four nucleotides, indicating that these introns were vertically inherited from a common phyllopharyngean ancestor and that reverse splicing might have been involved in the transposition.     

A comparison of bacteria and benthic invertebrates as indicators of ecological health in streams

1. We set out to evaluate the reliability of bacterial communities as an indicator of freshwater ecological health.
2. Samples of epilithic biofilm were taken over a 1-year period from four streams, each impacted by varying degrees of human modification. The bacteria within each sample were characterised using a whole community DNA fingerprinting technique (automated ribosomal intergenic spacer analysis). Spatial and temporal differences in community structure between samples were visualised using multi-dimensional scaling and quantified using permutational multivariate anova . Macrobenthic invertebrates, which are commonly used as indicators of stream ecological health, were also sampled for comparison.
3. Multivariate analysis revealed a clear gradient in macroinvertebrate community structure between sites exposed to increased human impact. Bacterial communities, however, could only distinguish the most impacted site from the remainder.
4. Additional research is required to increase the sensitivity of bacterial community analyses before endorsing their use as an indicator of freshwater ecological health.     

Stream ecosystem responses to the 2007 spring freeze in the southeastern United States: unexpected effects of climate change

Some expected changes in climate resulting from human greenhouse gas emissions are clear and well documented, but others may be harder to predict because they involve extreme weather events or heretofore unusual combinations of weather patterns. One recent example of unusual weather that may become more frequent with climate change occurred in early spring 2007 when a large Arctic air mass moved into the eastern United States following a very warm late winter. In this paper, we document effects of this freeze event on Walker Branch, a well‐studied stream ecosystem in eastern Tennessee. The 2007 spring freeze killed newly grown leaf tissues in the forest canopy, dramatically increasing the amount of light reaching the stream. Light levels at the stream surface were sustained at levels considerably above those normal for the late spring and summer months due to the incomplete recovery of canopy leaf area. Increased light levels caused a cascade of ecological effects in the stream beginning with considerably higher (two–three times) rates of gross primary production (GPP) during the late spring and summer months when normally low light levels severely limit stream GPP. Higher rates of stream GPP in turn resulted in higher rates of nitrate (NO₃^?) uptake by the autotrophic community and lower NO₃^? concentrations in stream water. Higher rates of stream GPP in summer also resulted in higher growth rates of a dominant herbivore, the snail Elimia clavaeformis. Typically, during summer months net NO₃^? uptake and snail growth rates are zero to negative; however, in 2007 uptake and growth were maintained at moderate levels. These results show how changes in forest vegetation phenology can have dramatic effects on stream productivity at multiple trophic levels and on nutrient cycling as a result of tight coupling of forest and stream ecosystems. Thus, climate change‐induced changes in canopy structure and phenology may lead to large effects on stream ecosystems in the future.     

Can limited dispersal or biotic interaction explain the declining abundance of the whelk,Morula marginalba,at the edge of its range?

The southern range limit of the planktotrophic, intertidal whelk, Morula marginalba, occurs immediately to the north of the south‐east Australian biogeographical barrier and we predict that its range may be limited by dispersal and biotic interactions. The barrier includes several hundred kilometers without suitable habitat and is the convergence zone of major ocean currents. Within the barrier region, along‐shore larval transport is expected to be erratic, with water moving offshore to form long‐lived eddies. Through comparison of central and range edge populations, we test for evidence of recruitment limitation and interspecific competition with the whelk, Haustrum vinosum, which occurs sympatrically at the range edge. We found similar levels of recruitment and allozyme genetic variation within centre and edge populations where H. vinosum was absent, implying that populations are strongly interconnected. Nevertheless, recruitment and abundance of M. marginalba were lower at its extreme range limit, where it occurs with H. vinosum. Indeed, we detected significant inverse correlations between the abundance of these species, although their habitat use was similar and they consumed similar prey. These lines of evidence suggest a restricted recruitment across the barrier limits the range of M. marginalba but emphasize that multiple factors may act to set species range limits. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 103 , 849–862.     

Plant traits mediate effects of predators across pepper (Capsicum annuum) varieties

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Characterization of EST derived SSRs from the bay scallop,Argopecten irradians

Interest in bay scallop conservation has resulted in organized stock enhancement efforts and increased attention to fisheries management issues. Genetic markers can facilitate the monitoring of enhancement efforts, characterization of wild populations, and optimize hatchery practices. We have identified eight polymorphic simple sequence repeat markers including one dinucleotide, six trinucleotide and one compound dinucleotide repeats, in expressed sequence tags generated from multiple bay scallop cDNA libraries. The numbers of alleles range from two to five. The expected and observed heterozygosities range from 0.093 to 0.720 and 0.095 to 0.600, respectively.     

Chickpea chlorotic dwarf virus,a new leafhopper-transmitted geminivirus of chickpea in India1

A disease of chickpea in India, characterised by chlorosis, severe stunting and phloem browning, was shown to be caused by a geminivirus. This virus was transmitted by the leafhopper Orosius orientalis from chickpea to chickpea and several other plant species. A method for purification of this virus was devised and a polyclonal antiserum produced. The majority of the purified particles were geminate. The size of the coat protein was shown to be 32 kD and the nucleic acid was shown to be circular ssDNA of 2900 nucleotides. By immunosorbent electron microscopy this virus was shown to be unrelated to the leafhopper-transmitted geminiviruses known to infect dicotyledons such as beet curly top, bean summer death and tobacco yellow dwarf viruses. On the basis of particle morphology, leafhopper transmission, host range and serology this virus was considered to be a new, hitherto undescribed, geminivirus and was named chickpea chlorotic dwarf virus.     

Spiders of the families Theridiidae, Tetragnathidae and Araneidae (Arachnida: Araneae) from Aldabra atoll

A total of 36 spider species of the families Theridiidae, Tetragnathidae and Araneidae are recorded from Aldabra atoll. Of these, 26 are described as new, together with one new subspecies. The taxonomy of the new species is discussed and, for comparative purposes, five other species not from Aldabra are illustrated. One new synonymy is established. Records for each species are given with, in some cases, notes on biology. The possible biological significance of the egg sac strings found in some species is considered. Finally, the biogeographical affinities of the Aldabra species are briefly discussed.     

Dehiscence of Fruit in Oilseed Rape (Brassica nap us L.): II. THE ROLE OF CELL WALL DEGRADING ENZYMES AND ETHYLENE

Pod shatter in oilseed rape is accompanied by the degradationof the cell wall at the site of fruit dehiscence. Cell separationis preceded by an increase in the activity of the hydrolyticenzyme cellulase (ß 1,4-glucanase, E.C. 3.1.2.4 [EC] ),and this rise in enzyme activity is restricted to the dehiscencezone cells. In contrast, the activity of the cell wall degradingenzyme polygalacturonase (E.C. 3.2.1.15 [EC] ) exhibits no correlationeither temporally or spatially with pod dehiscence. An analysisof the ethylene production profile by intact pods during maturationhas revealed the existence of an ethylene climacteric and thisis temporally correlated with the tissue-specific increase incellulase activity. The major site of ethylene production bythe fruit has been identified to be the developing seed. Sincemaintenance of intact pods in ethylene accelerates both thesenescence and dehiscence of the tissue, it is possible thatthis gaseous regulator plays an important role in the processof pod shatter in vivo. Key words: Oilseed rape, Brassica napus, pod shatter, cellulase, polygalacturonase, ethylene